RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 NBPF1Q3BBV0 1214 aa14.23□□□□□ -0.13
UPF1-213ENST00000601981 CARD11Q9BXL7 1154 aa14.23□□□□□ -0.13
UPF1-213ENST00000601981 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.23□□□□□ -0.13
UPF1-213ENST00000601981 ADGRL3Q9HAR2 1447 aa14.23□□□□□ -0.13
UPF1-213ENST00000601981 DCCP43146 1447 aa14.22□□□□□ -0.13
UPF1-213ENST00000601981 TOM1O60784 492 aa14.21□□□□□ -0.13
UPF1-213ENST00000601981 PRAM1Q96QH2 718 aa14.21□□□□□ -0.13
UPF1-213ENST00000601981 C19orf44Q9H6X5 657 aa14.21□□□□□ -0.13
UPF1-213ENST00000601981 QRICH2Q9H0J4 1663 aa14.2□□□□□ -0.14
UPF1-213ENST00000601981 ATF3P18847 181 aa14.2□□□□□ -0.14
UPF1-213ENST00000601981 RBM33Q96EV2 1170 aaKnown RBP14.2□□□□□ -0.14
UPF1-213ENST00000601981 CDC42BPGQ6DT37 1551 aa14.2□□□□□ -0.14
UPF1-213ENST00000601981 WAPLQ7Z5K2 1190 aa14.19□□□□□ -0.14
UPF1-213ENST00000601981 CADPS2Q86UW7 1296 aa14.19□□□□□ -0.14
UPF1-213ENST00000601981 CENPJQ9HC77 1338 aaPredicted RBP14.18□□□□□ -0.14
UPF1-213ENST00000601981 ADGRB2O60241 1585 aa14.17□□□□□ -0.14
UPF1-213ENST00000601981 SAFB2Q14151 953 aaKnown RBP eCLIP14.17□□□□□ -0.14
UPF1-213ENST00000601981 PLEKHH1Q9ULM0 1364 aa14.17□□□□□ -0.14
UPF1-213ENST00000601981 FMN2Q9NZ56 1722 aa14.15□□□□□ -0.14
UPF1-213ENST00000601981 SLC24A1O60721 1099 aa14.15□□□□□ -0.14
UPF1-213ENST00000601981 MINK1Q8N4C8 1332 aaPredicted RBP14.14□□□□□ -0.15
UPF1-213ENST00000601981 SCAF1Q9H7N4 1312 aaKnown RBP14.14□□□□□ -0.15
UPF1-213ENST00000601981 ITSN1Q15811 1721 aa14.13□□□□□ -0.15
UPF1-213ENST00000601981 USP47Q96K76 1375 aa14.13□□□□□ -0.15
UPF1-213ENST00000601981 DIEXFQ68CQ4 756 aaKnown RBP14.13□□□□□ -0.15
UPF1-213ENST00000601981 HSPA1LP34931 641 aa14.12□□□□□ -0.15
UPF1-213ENST00000601981 PIP4K2BP78356 416 aa14.12□□□□□ -0.15
UPF1-213ENST00000601981 SLAIN2Q9P270 581 aa14.12□□□□□ -0.15
UPF1-213ENST00000601981 SBNO2Q9Y2G9 1366 aa14.11□□□□□ -0.15
UPF1-213ENST00000601981 ROBO1Q9Y6N7 1651 aa14.1□□□□□ -0.15
UPF1-213ENST00000601981 MST1RQ04912 1400 aa14.1□□□□□ -0.15
UPF1-213ENST00000601981 RGPD8O14715 1765 aaPredicted RBP14.1□□□□□ -0.15
UPF1-213ENST00000601981 HIRIP3Q9BW71 556 aaPredicted RBP14.1□□□□□ -0.15
UPF1-213ENST00000601981 EVC2Q86UK5 1308 aa14.1□□□□□ -0.15
UPF1-213ENST00000601981 TULP4Q9NRJ4 1543 aa14.1□□□□□ -0.15
UPF1-213ENST00000601981 ANKARQ7Z5J8 1434 aa14.09□□□□□ -0.15
UPF1-213ENST00000601981 WASLO00401 505 aaPredicted RBP14.09□□□□□ -0.15
UPF1-213ENST00000601981 EIF4G2P78344 907 aaKnown RBP eCLIP14.09□□□□□ -0.156e-13■■■■□ 20.9
UPF1-213ENST00000601981 KIF1AQ12756 1690 aa14.09□□□□□ -0.15
UPF1-213ENST00000601981 C1orf167Q5SNV9 1468 aa14.08□□□□□ -0.16
UPF1-213ENST00000601981 ST20-MTHFSA0A0A6YYL1 179 aa14.07□□□□□ -0.16
UPF1-213ENST00000601981 SRPK2P78362 688 aaKnown RBP14.07□□□□□ -0.16
UPF1-213ENST00000601981 CDK19Q9BWU1 502 aa14.06□□□□□ -0.16
UPF1-213ENST00000601981 USP32Q8NFA0 1604 aa14.05□□□□□ -0.16
UPF1-213ENST00000601981 NUTM2FA1L443 756 aa14.05□□□□□ -0.16
UPF1-213ENST00000601981 ESCO1Q5FWF5 840 aa14.05□□□□□ -0.16
UPF1-213ENST00000601981 TOPAZ1Q8N9V7 1692 aa14.04□□□□□ -0.16
UPF1-213ENST00000601981 PHLPP1O60346 1717 aa14.04□□□□□ -0.16
UPF1-213ENST00000601981 TMF1P82094 1093 aa14.04□□□□□ -0.16
UPF1-213ENST00000601981 CDCA8Q53HL2 280 aa14.04□□□□□ -0.16
UPF1-213ENST00000601981 NHSL1Q5SYE7 1610 aa14.04□□□□□ -0.16
UPF1-213ENST00000601981 BRINP3Q76B58 766 aa14.03□□□□□ -0.16
UPF1-213ENST00000601981 ATAD2Q6PL18 1390 aa14.03□□□□□ -0.16
UPF1-213ENST00000601981 ATP7BP35670 1465 aa14.03□□□□□ -0.16
UPF1-213ENST00000601981 AHDC1Q5TGY3 1603 aaPredicted RBP14.02□□□□□ -0.16
UPF1-213ENST00000601981 NUDT16Q96DE0 195 aaKnown RBP14.02□□□□□ -0.17
UPF1-213ENST00000601981 MED1Q15648 1581 aaPredicted RBP14.01□□□□□ -0.17
UPF1-213ENST00000601981 NPHP3Q7Z494 1330 aa14.01□□□□□ -0.17
UPF1-213ENST00000601981 HSPA5P11021 654 aaKnown RBP14.01□□□□□ -0.17
UPF1-213ENST00000601981 PUS7Q96PZ0 661 aaKnown RBP14.01□□□□□ -0.17
UPF1-213ENST00000601981 TESK2Q96S53 571 aa14.01□□□□□ -0.17
UPF1-213ENST00000601981 PHF8Q9UPP1 1060 aa14.01□□□□□ -0.17
UPF1-213ENST00000601981 CCDC61Q9Y6R9 512 aa14.01□□□□□ -0.17
UPF1-213ENST00000601981 ORAI2Q96SN7 254 aa14□□□□□ -0.17
UPF1-213ENST00000601981 CABP2Q9NPB3 220 aa14□□□□□ -0.17
UPF1-213ENST00000601981 PPIP5K1Q6PFW1 1433 aa13.98□□□□□ -0.17
UPF1-213ENST00000601981 NINLQ9Y2I6 1382 aa13.98□□□□□ -0.17
UPF1-213ENST00000601981 PRR36Q9H6K5 1346 aa13.98□□□□□ -0.17
UPF1-213ENST00000601981 NGDNQ8NEJ9 315 aaKnown RBP13.97□□□□□ -0.17
UPF1-213ENST00000601981 COL16A1Q07092 1604 aaPredicted RBP13.97□□□□□ -0.17
UPF1-213ENST00000601981 FOXO3O43524 673 aa13.96□□□□□ -0.17
UPF1-213ENST00000601981 PSME1Q06323 249 aa13.96□□□□□ -0.17
UPF1-213ENST00000601981 PMFBP1Q8TBY8 1022 aa13.96□□□□□ -0.17
UPF1-213ENST00000601981 AKAP12Q02952 1782 aa13.96□□□□□ -0.18
UPF1-213ENST00000601981 PLEKHG3A1L390 1219 aa13.95□□□□□ -0.18
UPF1-213ENST00000601981 TMC1Q8TDI8 760 aa13.95□□□□□ -0.18
UPF1-213ENST00000601981 PHF23Q9BUL5 403 aaPredicted RBP13.95□□□□□ -0.18
UPF1-213ENST00000601981 LRRC59Q96AG4 307 aaKnown RBP13.94□□□□□ -0.18
UPF1-213ENST00000601981 CABP1Q9NZU7 370 aa13.94□□□□□ -0.18
UPF1-213ENST00000601981 POLR3AO14802 1390 aaPredicted RBP13.94□□□□□ -0.18
UPF1-213ENST00000601981 SHPRHQ149N8 1683 aa13.93□□□□□ -0.18
UPF1-213ENST00000601981 BRD4O60885 1362 aaPredicted RBP13.93□□□□□ -0.18
UPF1-213ENST00000601981 PXDNQ92626 1479 aa13.93□□□□□ -0.18
UPF1-213ENST00000601981 MON2Q7Z3U7 1717 aa13.93□□□□□ -0.18
UPF1-213ENST00000601981 ACEP12821 1306 aa13.92□□□□□ -0.18
UPF1-213ENST00000601981 SOS2Q07890 1332 aaPredicted RBP13.92□□□□□ -0.18
UPF1-213ENST00000601981 KRT28Q7Z3Y7 464 aa13.92□□□□□ -0.18
UPF1-213ENST00000601981 HDGFL2Q7Z4V5 671 aaPredicted RBP13.92□□□□□ -0.18
UPF1-213ENST00000601981 POLR3GLQ9BT43 218 aa13.92□□□□□ -0.18
UPF1-213ENST00000601981 ZNF692Q9BU19 519 aaPredicted RBP13.92□□□□□ -0.18
UPF1-213ENST00000601981 TERF2IPQ9NYB0 399 aa13.92□□□□□ -0.18
UPF1-213ENST00000601981 TRPM3Q9HCF6 1732 aaPredicted RBP13.92□□□□□ -0.18
UPF1-213ENST00000601981 MYOM1P52179 1685 aa13.91□□□□□ -0.18
UPF1-213ENST00000601981 DDX17Q92841 729 aaKnown RBP13.91□□□□□ -0.18
UPF1-213ENST00000601981 SBNO1A3KN83 1393 aa13.91□□□□□ -0.18
UPF1-213ENST00000601981 JCADQ9P266 1359 aa13.91□□□□□ -0.18
UPF1-213ENST00000601981 XPCQ01831 940 aaPredicted RBP13.9□□□□□ -0.18
UPF1-213ENST00000601981 TNS3Q68CZ2 1445 aa13.9□□□□□ -0.19
UPF1-213ENST00000601981 ARHGEF10O15013 1369 aa13.89□□□□□ -0.19
UPF1-213ENST00000601981 KTN1Q86UP2 1357 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms