RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CCDC144AA2RUR9 1427 aa18.73■□□□□ 0.59
TRIM28-212ENST00000597995 ADGRF5Q8IZF2 1346 aa18.73■□□□□ 0.59
TRIM28-212ENST00000597995 CDC42BPGQ6DT37 1551 aa18.72■□□□□ 0.59
TRIM28-212ENST00000597995 FOXD1Q16676 465 aa18.72■□□□□ 0.59
TRIM28-212ENST00000597995 ESCO1Q5FWF5 840 aa18.72■□□□□ 0.59
TRIM28-212ENST00000597995 TRPC5Q9UL62 973 aaPredicted RBP18.72■□□□□ 0.59
TRIM28-212ENST00000597995 COL22A1Q8NFW1 1626 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-212ENST00000597995 ANKRD30BQ9BXX2 1392 aa18.71■□□□□ 0.59
TRIM28-212ENST00000597995 TECPR2O15040 1411 aa18.71■□□□□ 0.59
TRIM28-212ENST00000597995 RGL3Q3MIN7 710 aa18.7■□□□□ 0.58
TRIM28-212ENST00000597995 SPATA31E1Q6ZUB1 1445 aa18.7■□□□□ 0.58
TRIM28-212ENST00000597995 LRPPRCP42704 1394 aaKnown RBP18.69■□□□□ 0.58
TRIM28-212ENST00000597995 ABCC11Q96J66 1382 aa18.69■□□□□ 0.58
TRIM28-212ENST00000597995 MPHOSPH9Q99550 1183 aa18.69■□□□□ 0.58
TRIM28-212ENST00000597995 FOXO3O43524 673 aa18.68■□□□□ 0.58
TRIM28-212ENST00000597995 WAPLQ7Z5K2 1190 aa18.68■□□□□ 0.58
TRIM28-212ENST00000597995 STK26Q9P289 416 aa18.68■□□□□ 0.58
TRIM28-212ENST00000597995 MYOM2P54296 1465 aa18.68■□□□□ 0.58
TRIM28-212ENST00000597995 PXDNQ92626 1479 aa18.67■□□□□ 0.58
TRIM28-212ENST00000597995 ATAD2Q6PL18 1390 aa18.67■□□□□ 0.58
TRIM28-212ENST00000597995 ATRNO75882 1429 aa18.66■□□□□ 0.58
TRIM28-212ENST00000597995 ACIN1Q9UKV3 1341 aaKnown RBP18.66■□□□□ 0.58
TRIM28-212ENST00000597995 SIRT1Q96EB6 747 aa18.65■□□□□ 0.58
TRIM28-212ENST00000597995 IFT172Q9UG01 1749 aa18.64■□□□□ 0.57
TRIM28-212ENST00000597995 TMEM132EQ6IEE7 984 aa18.64■□□□□ 0.57
TRIM28-212ENST00000597995 PIK3C2GO75747 1445 aa18.64■□□□□ 0.57
TRIM28-212ENST00000597995 XPCQ01831 940 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-212ENST00000597995 KNDC1Q76NI1 1749 aa18.63■□□□□ 0.57
TRIM28-212ENST00000597995 BCL9LQ86UU0 1499 aa18.62■□□□□ 0.57
TRIM28-212ENST00000597995 YTHDC2Q9H6S0 1430 aaKnown RBP18.61■□□□□ 0.57
TRIM28-212ENST00000597995 PLEKHH1Q9ULM0 1364 aa18.61■□□□□ 0.57
TRIM28-212ENST00000597995 NUTM2FA1L443 756 aa18.61■□□□□ 0.57
TRIM28-212ENST00000597995 SPATA31A3Q5VYP0 1347 aa18.6■□□□□ 0.57
TRIM28-212ENST00000597995 C14orf93Q9H972 538 aaKnown RBP18.6■□□□□ 0.57
TRIM28-212ENST00000597995 MARF1Q9Y4F3 1742 aaKnown RBP18.6■□□□□ 0.57
TRIM28-212ENST00000597995 CCDC125Q86Z20 511 aa18.59■□□□□ 0.57
TRIM28-212ENST00000597995 GJD4Q96KN9 370 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-212ENST00000597995 FMN2Q9NZ56 1722 aa18.58■□□□□ 0.57
TRIM28-212ENST00000597995 KIF1AQ12756 1690 aa18.57■□□□□ 0.56
TRIM28-212ENST00000597995 KRT28Q7Z3Y7 464 aa18.57■□□□□ 0.56
TRIM28-212ENST00000597995 DHX57Q6P158 1386 aaKnown RBP18.56■□□□□ 0.56
TRIM28-212ENST00000597995 UNC5CLQ8IV45 518 aa18.56■□□□□ 0.56
TRIM28-212ENST00000597995 NRXN1Q9ULB1 1477 aa18.55■□□□□ 0.56
TRIM28-212ENST00000597995 PSME1Q06323 249 aa18.55■□□□□ 0.56
TRIM28-212ENST00000597995 SLIT2O94813 1529 aa18.54■□□□□ 0.56
TRIM28-212ENST00000597995 CFAP70Q5T0N1 1121 aa18.54■□□□□ 0.56
TRIM28-212ENST00000597995 PHF8Q9UPP1 1060 aa18.54■□□□□ 0.56
TRIM28-212ENST00000597995 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.54■□□□□ 0.56
TRIM28-212ENST00000597995 EP400Q96L91 3159 aa18.52■□□□□ 0.56
TRIM28-212ENST00000597995 ZRANB1Q9UGI0 708 aa18.51■□□□□ 0.55
TRIM28-212ENST00000597995 TNS3Q68CZ2 1445 aa18.5■□□□□ 0.55
TRIM28-212ENST00000597995 PRAM1Q96QH2 718 aa18.5■□□□□ 0.55
TRIM28-212ENST00000597995 SBNO1A3KN83 1393 aa18.5■□□□□ 0.55
TRIM28-212ENST00000597995 RALGAPBQ86X10 1494 aa18.5■□□□□ 0.55
TRIM28-212ENST00000597995 HAP1P54257 671 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-212ENST00000597995 USP32Q8NFA0 1604 aa18.49■□□□□ 0.55
TRIM28-212ENST00000597995 SRCAPQ6ZRS2 3230 aa18.48■□□□□ 0.55
TRIM28-212ENST00000597995 RGPD8O14715 1765 aaPredicted RBP18.48■□□□□ 0.55
TRIM28-212ENST00000597995 DLC1Q96QB1 1528 aa18.48■□□□□ 0.55
TRIM28-212ENST00000597995 GLI3P10071 1580 aa18.47■□□□□ 0.55
TRIM28-212ENST00000597995 ARHGEF10O15013 1369 aa18.47■□□□□ 0.55
TRIM28-212ENST00000597995 VPS72Q15906 364 aa18.47■□□□□ 0.55
TRIM28-212ENST00000597995 POGKQ9P215 609 aa18.47■□□□□ 0.55
TRIM28-212ENST00000597995 ANKARQ7Z5J8 1434 aa18.47■□□□□ 0.55
TRIM28-212ENST00000597995 SAFB2Q14151 953 aaKnown RBP eCLIP18.46■□□□□ 0.55
TRIM28-212ENST00000597995 CABLES1Q8TDN4 633 aa18.46■□□□□ 0.55
TRIM28-212ENST00000597995 ONECUT3O60422 494 aaPredicted RBP18.45■□□□□ 0.54
TRIM28-212ENST00000597995 BLMP54132 1417 aaPredicted RBP18.45■□□□□ 0.54
TRIM28-212ENST00000597995 LMOD2Q6P5Q4 547 aa18.43■□□□□ 0.54
TRIM28-212ENST00000597995 SEPT12Q8IYM1 358 aa18.43■□□□□ 0.54
TRIM28-212ENST00000597995 PMFBP1Q8TBY8 1022 aa18.43■□□□□ 0.54
TRIM28-212ENST00000597995 STAC3Q96MF2 364 aa18.43■□□□□ 0.54
TRIM28-212ENST00000597995 NWD2Q9ULI1 1742 aa18.43■□□□□ 0.54
TRIM28-212ENST00000597995 RAB3GAP2Q9H2M9 1393 aa18.42■□□□□ 0.54
TRIM28-212ENST00000597995 ADGRB2O60241 1585 aa18.42■□□□□ 0.54
TRIM28-212ENST00000597995 ADGRB1O14514 1584 aa18.42■□□□□ 0.54
TRIM28-212ENST00000597995 EIF3AQ14152 1382 aaKnown RBP18.42■□□□□ 0.54
TRIM28-212ENST00000597995 FAM83GA6ND36 823 aa18.41■□□□□ 0.54
TRIM28-212ENST00000597995 TRAK1Q9UPV9 953 aa18.4■□□□□ 0.54
TRIM28-212ENST00000597995 BRWD3Q6RI45 1802 aa18.39■□□□□ 0.54
TRIM28-212ENST00000597995 PLCH1Q4KWH8 1693 aa18.39■□□□□ 0.53
TRIM28-212ENST00000597995 PLEKHG5O94827 1062 aa18.39■□□□□ 0.53
TRIM28-212ENST00000597995 SF3B2Q13435 895 aaKnown RBP18.39■□□□□ 0.53
TRIM28-212ENST00000597995 CCDC9Q9Y3X0 531 aaKnown RBP18.39■□□□□ 0.53
TRIM28-212ENST00000597995 GPRASP1Q5JY77 1395 aa18.39■□□□□ 0.53
TRIM28-212ENST00000597995 ABCA3Q99758 1704 aa18.38■□□□□ 0.53
TRIM28-212ENST00000597995 KRT27Q7Z3Y8 459 aa18.38■□□□□ 0.53
TRIM28-212ENST00000597995 WASLO00401 505 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-212ENST00000597995 DCAF11Q8TEB1 546 aa18.37■□□□□ 0.53
TRIM28-212ENST00000597995 HIRIP3Q9BW71 556 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-212ENST00000597995 DEFB132Q7Z7B7 95 aa18.36■□□□□ 0.53
TRIM28-212ENST00000597995 MINK1Q8N4C8 1332 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-212ENST00000597995 PRR36Q9H6K5 1346 aa18.36■□□□□ 0.53
TRIM28-212ENST00000597995 TRPM3Q9HCF6 1732 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-212ENST00000597995 KDM2AQ9Y2K7 1162 aa18.36■□□□□ 0.53
TRIM28-212ENST00000597995 HRCP23327 699 aa18.35■□□□□ 0.53
TRIM28-212ENST00000597995 TULP4Q9NRJ4 1543 aa18.34■□□□□ 0.53
TRIM28-212ENST00000597995 BTG4Q9NY30 223 aa18.34■□□□□ 0.53
TRIM28-212ENST00000597995 ALS2Q96Q42 1657 aa18.33■□□□□ 0.52
TRIM28-212ENST00000597995 NGDNQ8NEJ9 315 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms