RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-204ENST00000594828 LRP6O75581 1613 aa34.46■■■■□ 3.11
LSM4-204ENST00000594828 CFAP70Q5T0N1 1121 aa34.46■■■■□ 3.11
LSM4-204ENST00000594828 YTHDC2Q9H6S0 1430 aaKnown RBP34.46■■■■□ 3.11
LSM4-204ENST00000594828 NUTM2BA6NNL0 878 aaPredicted RBP34.43■■■■□ 3.1
LSM4-204ENST00000594828 NUTM2EB1AL46 878 aaPredicted RBP34.43■■■■□ 3.1
LSM4-204ENST00000594828 NUTM2AQ8IVF1 878 aaPredicted RBP34.43■■■■□ 3.1
LSM4-204ENST00000594828 DHX57Q6P158 1386 aaKnown RBP34.41■■■■□ 3.1
LSM4-204ENST00000594828 PLEKHH1Q9ULM0 1364 aa34.41■■■■□ 3.1
LSM4-204ENST00000594828 SIRT1Q96EB6 747 aa34.41■■■■□ 3.1
LSM4-204ENST00000594828 KNDC1Q76NI1 1749 aa34.4■■■■□ 3.1
LSM4-204ENST00000594828 CDC42BPGQ6DT37 1551 aa34.4■■■■□ 3.1
LSM4-204ENST00000594828 ESCO1Q5FWF5 840 aa34.38■■■■□ 3.09
LSM4-204ENST00000594828 KDM2AQ9Y2K7 1162 aa34.37■■■■□ 3.09
LSM4-204ENST00000594828 SOS2Q07890 1332 aaPredicted RBP34.36■■■■□ 3.09
LSM4-204ENST00000594828 DCAF11Q8TEB1 546 aa34.36■■■■□ 3.09
LSM4-204ENST00000594828 LAMC1P11047 1609 aa34.36■■■■□ 3.09
LSM4-204ENST00000594828 PNPLA6Q8IY17 1366 aa34.36■■■■□ 3.09
LSM4-204ENST00000594828 NUTM2FA1L443 756 aa34.34■■■■□ 3.09
LSM4-204ENST00000594828 ZNF772Q68DY9 489 aaPredicted RBP34.34■■■■□ 3.09
LSM4-204ENST00000594828 STAC3Q96MF2 364 aa34.32■■■■□ 3.08
LSM4-204ENST00000594828 NPHP3Q7Z494 1330 aa34.29■■■■□ 3.08
LSM4-204ENST00000594828 PRAM1Q96QH2 718 aa34.27■■■■□ 3.08
LSM4-204ENST00000594828 FOXO3O43524 673 aa34.26■■■■□ 3.08
LSM4-204ENST00000594828 SAFB2Q14151 953 aaKnown RBP eCLIP34.25■■■■□ 3.07
LSM4-204ENST00000594828 POGKQ9P215 609 aa34.25■■■■□ 3.07
LSM4-204ENST00000594828 C8orf37Q96NL8 207 aa34.22■■■■□ 3.07
LSM4-204ENST00000594828 AFF2P51816 1311 aa34.22■■■■□ 3.07
LSM4-204ENST00000594828 FMN2Q9NZ56 1722 aa34.21■■■■□ 3.07
LSM4-204ENST00000594828 ADGRB1O14514 1584 aa34.21■■■■□ 3.07
LSM4-204ENST00000594828 TRAK1Q9UPV9 953 aa34.21■■■■□ 3.07
LSM4-204ENST00000594828 DLC1Q96QB1 1528 aa34.2■■■■□ 3.07
LSM4-204ENST00000594828 XPCQ01831 940 aaPredicted RBP34.2■■■■□ 3.07
LSM4-204ENST00000594828 ADAMTS2O95450 1211 aa34.19■■■■□ 3.06
LSM4-204ENST00000594828 PXDNQ92626 1479 aa34.17■■■■□ 3.06
LSM4-204ENST00000594828 RXRBP28702 533 aa34.15■■■■□ 3.06
LSM4-204ENST00000594828 NGLY1Q96IV0 654 aa34.14■■■■□ 3.06
LSM4-204ENST00000594828 PHF8Q9UPP1 1060 aa34.12■■■■□ 3.05
LSM4-204ENST00000594828 KIF1AQ12756 1690 aa34.09■■■■□ 3.05
LSM4-204ENST00000594828 COL22A1Q8NFW1 1626 aaPredicted RBP34.09■■■■□ 3.05
LSM4-204ENST00000594828 KRT28Q7Z3Y7 464 aa34.09■■■■□ 3.05
LSM4-204ENST00000594828 HIRIP3Q9BW71 556 aaPredicted RBP34.08■■■■□ 3.05
LSM4-204ENST00000594828 QTRT2Q9H974 415 aaKnown RBP34.08■■■■□ 3.05
LSM4-204ENST00000594828 MINK1Q8N4C8 1332 aaPredicted RBP34.06■■■■□ 3.04
LSM4-204ENST00000594828 RGPD8O14715 1765 aaPredicted RBP34.06■■■■□ 3.04
LSM4-204ENST00000594828 SPATA31A3Q5VYP0 1347 aa34.04■■■■□ 3.04
LSM4-204ENST00000594828 PSME1Q06323 249 aa34.04■■■■□ 3.04
LSM4-204ENST00000594828 ADGRB2O60241 1585 aa34.03■■■■□ 3.04
LSM4-204ENST00000594828 ANKARQ7Z5J8 1434 aa34.03■■■■□ 3.04
LSM4-204ENST00000594828 USP21Q9UK80 565 aa34.01■■■■□ 3.03
LSM4-204ENST00000594828 RBM6P78332 1123 aaKnown RBP34■■■■□ 3.03
LSM4-204ENST00000594828 FNBP4Q8N3X1 1017 aaPredicted RBP34■■■■□ 3.03
LSM4-204ENST00000594828 PMFBP1Q8TBY8 1022 aa34■■■■□ 3.03
LSM4-204ENST00000594828 WASLO00401 505 aaPredicted RBP33.99■■■■□ 3.03
LSM4-204ENST00000594828 CDK12Q9NYV4 1490 aaPredicted RBP33.98■■■■□ 3.03
LSM4-204ENST00000594828 EIF3AQ14152 1382 aaKnown RBP33.98■■■■□ 3.03
LSM4-204ENST00000594828 USP32Q8NFA0 1604 aa33.97■■■■□ 3.03
LSM4-204ENST00000594828 TRPC5Q9UL62 973 aaPredicted RBP33.94■■■■□ 3.02
LSM4-204ENST00000594828 PRR36Q9H6K5 1346 aa33.93■■■■□ 3.02
LSM4-204ENST00000594828 SBNO1A3KN83 1393 aa33.93■■■■□ 3.02
LSM4-204ENST00000594828 TNS3Q68CZ2 1445 aa33.93■■■■□ 3.02
LSM4-204ENST00000594828 ARHGEF28Q8N1W1 1705 aaKnown RBP33.93■■■■□ 3.02
LSM4-204ENST00000594828 KIAA1210Q9ULL0 1709 aa33.93■■■■□ 3.02
LSM4-204ENST00000594828 NBPF1Q3BBV0 1214 aa33.92■■■■□ 3.02
LSM4-204ENST00000594828 TULP4Q9NRJ4 1543 aa33.91■■■■□ 3.02
LSM4-204ENST00000594828 LMOD2Q6P5Q4 547 aa33.91■■■■□ 3.02
LSM4-204ENST00000594828 SIN3AQ96ST3 1273 aa33.91■■■■□ 3.02
LSM4-204ENST00000594828 L3MBTL2Q969R5 705 aa33.89■■■■□ 3.02
LSM4-204ENST00000594828 HAP1P54257 671 aaPredicted RBP33.88■■■■□ 3.01
LSM4-204ENST00000594828 MARF1Q9Y4F3 1742 aaKnown RBP33.87■■■■□ 3.01
LSM4-204ENST00000594828 GPRASP1Q5JY77 1395 aa33.86■■■■□ 3.01
LSM4-204ENST00000594828 ARHGEF10O15013 1369 aa33.85■■■■□ 3.01
LSM4-204ENST00000594828 BCL9LQ86UU0 1499 aa33.85■■■■□ 3.01
LSM4-204ENST00000594828 PLEKHG5O94827 1062 aa33.85■■■■□ 3.01
LSM4-204ENST00000594828 NEUROD1Q13562 356 aa33.85■■■■□ 3.01
LSM4-204ENST00000594828 CABLES1Q8TDN4 633 aa33.85■■■■□ 3.01
LSM4-204ENST00000594828 UPF1Q92900 1129 aaKnown RBP eCLIP33.85■■■■□ 3.01
LSM4-204ENST00000594828 RGS12O14924 1447 aa33.85■■■■□ 3.01
LSM4-204ENST00000594828 NGDNQ8NEJ9 315 aaKnown RBP33.84■■■■□ 3.01
LSM4-204ENST00000594828 NUDT16Q96DE0 195 aaKnown RBP33.84■■■■□ 3.01
LSM4-204ENST00000594828 CDK19Q9BWU1 502 aa33.84■■■■□ 3.01
LSM4-204ENST00000594828 ATRNO75882 1429 aa33.84■■■■□ 3.01
LSM4-204ENST00000594828 UNC5CLQ8IV45 518 aa33.78■■■■□ 3
LSM4-204ENST00000594828 ATP7BP35670 1465 aa33.77■■■■□ 3
LSM4-204ENST00000594828 SLIT2O94813 1529 aa33.75■■■□□ 2.99
LSM4-204ENST00000594828 GJD4Q96KN9 370 aaPredicted RBP33.75■■■□□ 2.99
LSM4-204ENST00000594828 TRPM3Q9HCF6 1732 aaPredicted RBP33.75■■■□□ 2.99
LSM4-204ENST00000594828 CENPJQ9HC77 1338 aaPredicted RBP33.75■■■□□ 2.99
LSM4-204ENST00000594828 PAK3O75914 559 aaPredicted RBP33.74■■■□□ 2.99
LSM4-204ENST00000594828 CCDC61Q9Y6R9 512 aa33.73■■■□□ 2.99
LSM4-204ENST00000594828 ITSN1Q15811 1721 aa33.73■■■□□ 2.99
LSM4-204ENST00000594828 TNKS1BP1Q9C0C2 1729 aaKnown RBP33.69■■■□□ 2.98
LSM4-204ENST00000594828 ALS2Q96Q42 1657 aa33.68■■■□□ 2.98
LSM4-204ENST00000594828 ABCA3Q99758 1704 aa33.67■■■□□ 2.98
LSM4-204ENST00000594828 FAM83GA6ND36 823 aa33.67■■■□□ 2.98
LSM4-204ENST00000594828 SRPK2P78362 688 aaKnown RBP33.67■■■□□ 2.98
LSM4-204ENST00000594828 PLEKHG3A1L390 1219 aa33.66■■■□□ 2.98
LSM4-204ENST00000594828 ACEP12821 1306 aa33.66■■■□□ 2.98
LSM4-204ENST00000594828 TRIM26Q12899 539 aaPredicted RBP33.66■■■□□ 2.98
LSM4-204ENST00000594828 NBPF8Q3BBV2 869 aa33.65■■■□□ 2.98
LSM4-204ENST00000594828 POLR3AO14802 1390 aaPredicted RBP33.64■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms