RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 CUL7Q14999 1698 aa15.04■□□□□ -0
LIG1-207ENST00000594759 NBPF1Q3BBV0 1214 aa15.04■□□□□ -0
LIG1-207ENST00000594759 SOX12O15370 315 aa15.04■□□□□ -0
LIG1-207ENST00000594759 TEX35Q5T0J7 233 aa15.04■□□□□ -0
LIG1-207ENST00000594759 SYNJ2O15056 1496 aa15.04■□□□□ -0
LIG1-207ENST00000594759 GOLGA6L4A6NEF3 574 aa15.03■□□□□ -0
LIG1-207ENST00000594759 UTP14CQ5TAP6 766 aaKnown RBP15.03■□□□□ -0
LIG1-207ENST00000594759 IPO4Q8TEX9 1081 aaKnown RBP15.03■□□□□ -0
LIG1-207ENST00000594759 PRIMPOLQ96LW4 560 aa15.03■□□□□ -0
LIG1-207ENST00000594759 TRERF1Q96PN7 1200 aa15.03■□□□□ -0
LIG1-207ENST00000594759 NRDCO43847 1150 aa15.03■□□□□ -0
LIG1-207ENST00000594759 GOLGA6L1Q8N7Z2 621 aa15.03■□□□□ -0
LIG1-207ENST00000594759 DNAJC2Q99543 621 aaKnown RBP15.03■□□□□ -0
LIG1-207ENST00000594759 TSPY26PQ9H489 355 aa15.02■□□□□ -0
LIG1-207ENST00000594759 MIA2Q96PC5 1412 aa15.02■□□□□ -0
LIG1-207ENST00000594759 ERBB4Q15303 1308 aa15.02■□□□□ -0
LIG1-207ENST00000594759 K7ELQ4 463 aaPredicted RBP15.02□□□□□ -0.01
LIG1-207ENST00000594759 IPO8O15397 1037 aaKnown RBP15.02□□□□□ -0.01
LIG1-207ENST00000594759 MORC1Q86VD1 984 aa15.02□□□□□ -0.01
LIG1-207ENST00000594759 TIGD1Q96MW7 591 aa15.02□□□□□ -0.01
LIG1-207ENST00000594759 CALCOCO1Q9P1Z2 691 aa15.02□□□□□ -0.01
LIG1-207ENST00000594759 MBD3O95983 291 aa15.01□□□□□ -0.01
LIG1-207ENST00000594759 NOL7Q9UMY1 257 aaKnown RBP15.01□□□□□ -0.01
LIG1-207ENST00000594759 KLHL40Q2TBA0 621 aa15.01□□□□□ -0.01
LIG1-207ENST00000594759 IFT57Q9NWB7 429 aa15.01□□□□□ -0.01
LIG1-207ENST00000594759 DAPK1P53355 1430 aa15.01□□□□□ -0.01
LIG1-207ENST00000594759 ANKRD45Q5TZF3 282 aa15.01□□□□□ -0.01
LIG1-207ENST00000594759 DUSP27Q5VZP5 1158 aa15.01□□□□□ -0.01
LIG1-207ENST00000594759 LNPKQ9C0E8 428 aa15.01□□□□□ -0.01
LIG1-207ENST00000594759 ZKSCAN2Q63HK3 967 aa15□□□□□ -0.01
LIG1-207ENST00000594759 PTPRKQ15262 1439 aa15□□□□□ -0.01
LIG1-207ENST00000594759 SYCE3A1L190 88 aa15□□□□□ -0.01
LIG1-207ENST00000594759 SSFA2P28290 1259 aa15□□□□□ -0.01
LIG1-207ENST00000594759 HECW1Q76N89 1606 aa15□□□□□ -0.01
LIG1-207ENST00000594759 NOL8Q76FK4 1167 aaKnown RBP15□□□□□ -0.01
LIG1-207ENST00000594759 KDM2BQ8NHM5 1336 aa15□□□□□ -0.01
LIG1-207ENST00000594759 TSPYL1Q9H0U9 437 aa14.99□□□□□ -0.01
LIG1-207ENST00000594759 DHX29Q7Z478 1369 aaKnown RBP14.99□□□□□ -0.01
LIG1-207ENST00000594759 ARHGEF11O15085 1522 aa14.99□□□□□ -0.01
LIG1-207ENST00000594759 ARHGAP5Q13017 1502 aa14.99□□□□□ -0.01
LIG1-207ENST00000594759 GPS2Q13227 327 aa14.99□□□□□ -0.01
LIG1-207ENST00000594759 C9orf84Q5VXU9 1444 aa14.99□□□□□ -0.01
LIG1-207ENST00000594759 APBB1O00213 710 aa14.98□□□□□ -0.01
LIG1-207ENST00000594759 MCCP23508 829 aa14.98□□□□□ -0.01
LIG1-207ENST00000594759 SUPT6HQ7KZ85 1726 aaKnown RBP14.98□□□□□ -0.01
LIG1-207ENST00000594759 RIPK4P57078 832 aa14.98□□□□□ -0.01
LIG1-207ENST00000594759 SLFN5Q08AF3 891 aa14.98□□□□□ -0.01
LIG1-207ENST00000594759 ZRSR1Q15695 479 aaKnown RBP14.98□□□□□ -0.01
LIG1-207ENST00000594759 PRDM4Q9UKN5 801 aa14.98□□□□□ -0.01
LIG1-207ENST00000594759 GAS2L3Q86XJ1 694 aa14.97□□□□□ -0.01
LIG1-207ENST00000594759 DZIP1LQ8IYY4 767 aaKnown RBP14.97□□□□□ -0.01
LIG1-207ENST00000594759 PPP2R1AP30153 589 aa14.96□□□□□ -0.01
LIG1-207ENST00000594759 ANKRD30BQ9BXX2 1392 aa14.96□□□□□ -0.01
LIG1-207ENST00000594759 FAM69CQ0P6D2 419 aa14.96□□□□□ -0.02
LIG1-207ENST00000594759 NUTM2FA1L443 756 aa14.95□□□□□ -0.02
LIG1-207ENST00000594759 TPM3P06753 285 aa14.95□□□□□ -0.02
LIG1-207ENST00000594759 U2AF1L5P0DN76 240 aaPredicted RBP14.95□□□□□ -0.02
LIG1-207ENST00000594759 U2AF1Q01081 240 aaKnown RBP eCLIP14.95□□□□□ -0.02
LIG1-207ENST00000594759 FAM177BA6PVY3 158 aa14.95□□□□□ -0.02
LIG1-207ENST00000594759 BAG4O95429 457 aaKnown RBP14.95□□□□□ -0.02
LIG1-207ENST00000594759 ABCC5O15440 1437 aa14.95□□□□□ -0.02
LIG1-207ENST00000594759 PPP1R9BQ96SB3 815 aa14.95□□□□□ -0.02
LIG1-207ENST00000594759 PTPN23Q9H3S7 1636 aa14.95□□□□□ -0.02
LIG1-207ENST00000594759 ZSCAN23Q3MJ62 389 aa14.94□□□□□ -0.02
LIG1-207ENST00000594759 CCDC112Q8NEF3 446 aa14.94□□□□□ -0.02
LIG1-207ENST00000594759 DDX19BQ9UMR2 479 aa14.94□□□□□ -0.02
LIG1-207ENST00000594759 NGEFQ8N5V2 710 aa14.94□□□□□ -0.02
LIG1-207ENST00000594759 NOLC1Q14978 699 aaKnown RBP eCLIP14.93□□□□□ -0.028e-7■■■□□ 15.4
LIG1-207ENST00000594759 SPC24Q8NBT2 197 aa14.93□□□□□ -0.02
LIG1-207ENST00000594759 THOC2Q8NI27 1593 aaKnown RBP14.93□□□□□ -0.02
LIG1-207ENST00000594759 NOM1Q5C9Z4 860 aaKnown RBP14.93□□□□□ -0.02
LIG1-207ENST00000594759 TMEM132EQ6IEE7 984 aa14.93□□□□□ -0.02
LIG1-207ENST00000594759 STAC3Q96MF2 364 aa14.93□□□□□ -0.02
LIG1-207ENST00000594759 RAPGEF3O95398 923 aa14.93□□□□□ -0.02
LIG1-207ENST00000594759 ANTXR1Q9H6X2 564 aa14.93□□□□□ -0.02
LIG1-207ENST00000594759 ZNF500O60304 480 aaPredicted RBP14.92□□□□□ -0.02
LIG1-207ENST00000594759 LMOD2Q6P5Q4 547 aa14.92□□□□□ -0.02
LIG1-207ENST00000594759 MYRIPQ8NFW9 859 aa14.92□□□□□ -0.02
LIG1-207ENST00000594759 NPHP1O15259 732 aa14.92□□□□□ -0.02
LIG1-207ENST00000594759 TSC1Q92574 1164 aa14.92□□□□□ -0.02
LIG1-207ENST00000594759 SCAPERQ9BY12 1400 aa14.92□□□□□ -0.02
LIG1-207ENST00000594759 CWC15Q9P013 229 aaKnown RBP14.92□□□□□ -0.02
LIG1-207ENST00000594759 LRPPRCP42704 1394 aaKnown RBP14.92□□□□□ -0.02
LIG1-207ENST00000594759 MAGI1Q96QZ7 1491 aaPredicted RBP14.91□□□□□ -0.02
LIG1-207ENST00000594759 PRIM1P49642 420 aaKnown RBP14.91□□□□□ -0.02
LIG1-207ENST00000594759 TPD52L1Q16890 204 aaPredicted RBP14.91□□□□□ -0.02
LIG1-207ENST00000594759 CFAP70Q5T0N1 1121 aa14.91□□□□□ -0.02
LIG1-207ENST00000594759 ZNF830Q96NB3 372 aaPredicted RBP14.91□□□□□ -0.02
LIG1-207ENST00000594759 TRIM6-TRIM34B2RNG4 842 aa14.9□□□□□ -0.02
LIG1-207ENST00000594759 TRIM34Q9BYJ4 488 aa14.9□□□□□ -0.02
LIG1-207ENST00000594759 CWC22Q9HCG8 908 aaKnown RBP14.9□□□□□ -0.02
LIG1-207ENST00000594759 KIAA1107Q9UPP5 1409 aa14.9□□□□□ -0.02
LIG1-207ENST00000594759 RAB3GAP1Q15042 981 aa14.9□□□□□ -0.02
LIG1-207ENST00000594759 RABEP1Q15276 862 aa14.9□□□□□ -0.02
LIG1-207ENST00000594759 RBM27Q9P2N5 1060 aaKnown RBP14.9□□□□□ -0.02
LIG1-207ENST00000594759 KIF21AQ7Z4S6 1674 aa14.89□□□□□ -0.03
LIG1-207ENST00000594759 RBM25P49756 843 aaKnown RBP14.89□□□□□ -0.03
LIG1-207ENST00000594759 FAM184AQ8NB25 1140 aa14.89□□□□□ -0.03
LIG1-207ENST00000594759 FEZ1Q99689 392 aa14.89□□□□□ -0.03
LIG1-207ENST00000594759 RPRD2Q5VT52 1461 aaKnown RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms