RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 ZNF518AQ6AHZ1 1483 aa21.33■■□□□ 1
LIG1-206ENST00000594067 PANK1Q8TE04 598 aa21.32■■□□□ 1
LIG1-206ENST00000594067 DAXXQ9UER7 740 aaPredicted RBP21.32■■□□□ 1
LIG1-206ENST00000594067 COG6Q9Y2V7 657 aa21.32■■□□□ 1
LIG1-206ENST00000594067 NPATQ14207 1427 aa21.31■■□□□ 1
LIG1-206ENST00000594067 PDE3AQ14432 1141 aa21.31■■□□□ 1
LIG1-206ENST00000594067 SETBP1Q9Y6X0 1596 aa21.3■■□□□ 1
LIG1-206ENST00000594067 RUNDC1Q96C34 613 aa21.3■■□□□ 1
LIG1-206ENST00000594067 NUTM2DQ5VT03 806 aaPredicted RBP21.3■■□□□ 1
LIG1-206ENST00000594067 FRAT1Q92837 279 aaPredicted RBP21.3■■□□□ 1
LIG1-206ENST00000594067 CGNL1Q0VF96 1302 aa21.3■■□□□ 1
LIG1-206ENST00000594067 TCP11L2Q8N4U5 519 aa21.29■■□□□ 1
LIG1-206ENST00000594067 CFAP65Q6ZU64 1925 aaKnown RBP21.29■■□□□ 1
LIG1-206ENST00000594067 MTHFSP49914 203 aa21.28■■□□□ 1
LIG1-206ENST00000594067 CLUAP1Q96AJ1 413 aa21.28■■□□□ 1
LIG1-206ENST00000594067 ADGRB1O14514 1584 aa21.27■■□□□ 1
LIG1-206ENST00000594067 SHPRHQ149N8 1683 aa21.26■□□□□ 0.99
LIG1-206ENST00000594067 QRICH2Q9H0J4 1663 aa21.26■□□□□ 0.99
LIG1-206ENST00000594067 BRPF3Q9ULD4 1205 aa21.25■□□□□ 0.99
LIG1-206ENST00000594067 NPM1P06748 294 aaKnown RBP eCLIP21.24■□□□□ 0.99
LIG1-206ENST00000594067 RARSP54136 660 aaKnown RBP21.24■□□□□ 0.99
LIG1-206ENST00000594067 PPLO60437 1756 aa21.24■□□□□ 0.99
LIG1-206ENST00000594067 FRMPD1Q5SYB0 1578 aa21.24■□□□□ 0.99
LIG1-206ENST00000594067 NINLQ9Y2I6 1382 aa21.24■□□□□ 0.99
LIG1-206ENST00000594067 TNNQ9UQP3 1299 aa21.23■□□□□ 0.99
LIG1-206ENST00000594067 ZC3H13Q5T200 1668 aaKnown RBP21.23■□□□□ 0.99
LIG1-206ENST00000594067 RPGRIP1LQ68CZ1 1315 aa21.23■□□□□ 0.99
LIG1-206ENST00000594067 POGZQ7Z3K3 1410 aa21.23■□□□□ 0.99
LIG1-206ENST00000594067 BCL2L13Q9BXK5 485 aa21.22■□□□□ 0.99
LIG1-206ENST00000594067 CD109Q6YHK3 1445 aa21.22■□□□□ 0.99
LIG1-206ENST00000594067 CFAP53Q96M91 514 aa21.22■□□□□ 0.99
LIG1-206ENST00000594067 PHF23Q9BUL5 403 aaPredicted RBP21.22■□□□□ 0.99
LIG1-206ENST00000594067 IQSEC2Q5JU85 1478 aa21.21■□□□□ 0.99
LIG1-206ENST00000594067 WDR63Q8IWG1 891 aa21.21■□□□□ 0.99
LIG1-206ENST00000594067 SENP3Q9H4L4 574 aaPredicted RBP21.21■□□□□ 0.99
LIG1-206ENST00000594067 SAFB2Q14151 953 aaKnown RBP eCLIP21.2■□□□□ 0.98
LIG1-206ENST00000594067 CABP2Q9NPB3 220 aa21.2■□□□□ 0.98
LIG1-206ENST00000594067 EVC2Q86UK5 1308 aa21.19■□□□□ 0.98
LIG1-206ENST00000594067 RLBP1P12271 317 aa21.19■□□□□ 0.98
LIG1-206ENST00000594067 MLH3Q9UHC1 1453 aa21.19■□□□□ 0.98
LIG1-206ENST00000594067 FRAT2O75474 233 aaPredicted RBP21.18■□□□□ 0.98
LIG1-206ENST00000594067 U2AF1L5P0DN76 240 aaPredicted RBP21.18■□□□□ 0.98
LIG1-206ENST00000594067 U2AF1Q01081 240 aaKnown RBP eCLIP21.18■□□□□ 0.98
LIG1-206ENST00000594067 ABCC3O15438 1527 aa21.18■□□□□ 0.98
LIG1-206ENST00000594067 MAPK8IP3Q9UPT6 1336 aa21.17■□□□□ 0.98
LIG1-206ENST00000594067 SEC24BO95487 1268 aa21.16■□□□□ 0.98
LIG1-206ENST00000594067 PCDHB15Q9Y5E8 787 aa21.16■□□□□ 0.98
LIG1-206ENST00000594067 HECW2Q9P2P5 1572 aa21.16■□□□□ 0.98
LIG1-206ENST00000594067 VGFO15240 615 aaPredicted RBP21.16■□□□□ 0.98
LIG1-206ENST00000594067 USP19O94966 1318 aa21.16■□□□□ 0.98
LIG1-206ENST00000594067 ANKRD36BQ8N2N9 1353 aa21.16■□□□□ 0.98
LIG1-206ENST00000594067 GLI2P10070 1586 aa21.16■□□□□ 0.98
LIG1-206ENST00000594067 TULP4Q9NRJ4 1543 aa21.15■□□□□ 0.98
LIG1-206ENST00000594067 RAPGEF3O95398 923 aa21.15■□□□□ 0.98
LIG1-206ENST00000594067 PRKCSHP14314 528 aaPredicted RBP21.15■□□□□ 0.98
LIG1-206ENST00000594067 CCDC27Q2M243 656 aa21.15■□□□□ 0.98
LIG1-206ENST00000594067 USP32Q8NFA0 1604 aa21.14■□□□□ 0.98
LIG1-206ENST00000594067 PMFBP1Q8TBY8 1022 aa21.14■□□□□ 0.97
LIG1-206ENST00000594067 STK26Q9P289 416 aa21.13■□□□□ 0.97
LIG1-206ENST00000594067 PUS7Q96PZ0 661 aaKnown RBP21.12■□□□□ 0.97
LIG1-206ENST00000594067 MYH16Q9H6N6 1097 aa21.12■□□□□ 0.97
LIG1-206ENST00000594067 SIGLEC1Q9BZZ2 1709 aa21.11■□□□□ 0.97
LIG1-206ENST00000594067 NSD2O96028 1365 aa21.1■□□□□ 0.97
LIG1-206ENST00000594067 CFAP74Q9C0B2 1584 aa21.1■□□□□ 0.97
LIG1-206ENST00000594067 CAMSAP1Q5T5Y3 1602 aa21.1■□□□□ 0.97
LIG1-206ENST00000594067 IDI1Q13907 227 aa21.1■□□□□ 0.97
LIG1-206ENST00000594067 NEXMIFQ5QGS0 1516 aa21.09■□□□□ 0.97
LIG1-206ENST00000594067 ARHGEF28Q8N1W1 1705 aaKnown RBP21.09■□□□□ 0.97
LIG1-206ENST00000594067 SRPK2P78362 688 aaKnown RBP21.09■□□□□ 0.97
LIG1-206ENST00000594067 GGNBP2Q9H3C7 697 aa21.09■□□□□ 0.97
LIG1-206ENST00000594067 PDZRN3Q9UPQ7 1066 aa21.09■□□□□ 0.97
LIG1-206ENST00000594067 U2SURPO15042 1029 aaKnown RBP21.09■□□□□ 0.97
LIG1-206ENST00000594067 TSR2Q969E8 191 aaKnown RBP21.09■□□□□ 0.97
LIG1-206ENST00000594067 VIRMAQ69YN4 1812 aaKnown RBP21.08■□□□□ 0.97
LIG1-206ENST00000594067 AAMPQ13685 434 aa21.08■□□□□ 0.97
LIG1-206ENST00000594067 A0A1W2PP64 1363 aa21.07■□□□□ 0.96
LIG1-206ENST00000594067 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.07■□□□□ 0.96
LIG1-206ENST00000594067 RWDD1Q9H446 243 aaPredicted RBP21.05■□□□□ 0.96
LIG1-206ENST00000594067 MVPQ14764 893 aaKnown RBP21.05■□□□□ 0.96
LIG1-206ENST00000594067 ZKSCAN2Q63HK3 967 aa21.05■□□□□ 0.96
LIG1-206ENST00000594067 PIK3C2BO00750 1634 aa21.05■□□□□ 0.96
LIG1-206ENST00000594067 NCBP3Q53F19 620 aaKnown RBP21.04■□□□□ 0.96
LIG1-206ENST00000594067 EXOSC9Q06265 439 aaKnown RBP21.04■□□□□ 0.96
LIG1-206ENST00000594067 FTSJ3Q8IY81 847 aaKnown RBP21.04■□□□□ 0.96
LIG1-206ENST00000594067 MINK1Q8N4C8 1332 aaPredicted RBP21.03■□□□□ 0.96
LIG1-206ENST00000594067 ABCC11Q96J66 1382 aa21.03■□□□□ 0.96
LIG1-206ENST00000594067 DZIP1LQ8IYY4 767 aaKnown RBP21.03■□□□□ 0.96
LIG1-206ENST00000594067 PLEKHF1Q96S99 279 aa21.03■□□□□ 0.96
LIG1-206ENST00000594067 ADGRB2O60241 1585 aa21.02■□□□□ 0.96
LIG1-206ENST00000594067 TMPOP42166 694 aaKnown RBP21.02■□□□□ 0.96
LIG1-206ENST00000594067 SMC4Q9NTJ3 1288 aa21.02■□□□□ 0.96
LIG1-206ENST00000594067 NLRP1Q9C000 1473 aa21.02■□□□□ 0.95
LIG1-206ENST00000594067 OSCARQ8IYS5 282 aa21.01■□□□□ 0.95
LIG1-206ENST00000594067 TRIM35Q9UPQ4 493 aa21.01■□□□□ 0.95
LIG1-206ENST00000594067 FYB1O15117 783 aa21■□□□□ 0.95
LIG1-206ENST00000594067 BECN1Q14457 450 aa21■□□□□ 0.95
LIG1-206ENST00000594067 PRAM1Q96QH2 718 aa21■□□□□ 0.95
LIG1-206ENST00000594067 DIP2CQ9Y2E4 1556 aa20.99■□□□□ 0.95
LIG1-206ENST00000594067 SLC52A1Q9NWF4 448 aa20.99■□□□□ 0.95
LIG1-206ENST00000594067 POGKQ9P215 609 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms