RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 PLEKHH1Q9ULM0 1364 aa28.01■■■□□ 2.07
LSM4-203ENST00000593829 SLAIN2Q9P270 581 aa28.01■■■□□ 2.07
LSM4-203ENST00000593829 NBPF8Q3BBV2 869 aa28■■■□□ 2.07
LSM4-203ENST00000593829 PRAM1Q96QH2 718 aa28■■■□□ 2.07
LSM4-203ENST00000593829 TIMELESSQ9UNS1 1208 aa27.99■■■□□ 2.07
LSM4-203ENST00000593829 POGKQ9P215 609 aa27.98■■■□□ 2.07
LSM4-203ENST00000593829 TRPM1Q7Z4N2 1603 aa27.98■■■□□ 2.07
LSM4-203ENST00000593829 ROCK2O75116 1388 aaKnown RBP27.94■■■□□ 2.06
LSM4-203ENST00000593829 SAFB2Q14151 953 aaKnown RBP eCLIP27.94■■■□□ 2.06
LSM4-203ENST00000593829 MST1RQ04912 1400 aa27.91■■■□□ 2.06
LSM4-203ENST00000593829 CDC42BPGQ6DT37 1551 aa27.9■■■□□ 2.06
LSM4-203ENST00000593829 ARHGEF28Q8N1W1 1705 aaKnown RBP27.9■■■□□ 2.06
LSM4-203ENST00000593829 ROBO1Q9Y6N7 1651 aa27.88■■■□□ 2.05
LSM4-203ENST00000593829 GPRASP1Q5JY77 1395 aa27.87■■■□□ 2.05
LSM4-203ENST00000593829 RALGAPBQ86X10 1494 aa27.87■■■□□ 2.05
LSM4-203ENST00000593829 HSPA1LP34931 641 aa27.85■■■□□ 2.05
LSM4-203ENST00000593829 C1orf167Q5SNV9 1468 aa27.84■■■□□ 2.05
LSM4-203ENST00000593829 MINK1Q8N4C8 1332 aaPredicted RBP27.84■■■□□ 2.05
LSM4-203ENST00000593829 CARD11Q9BXL7 1154 aa27.83■■■□□ 2.05
LSM4-203ENST00000593829 BRINP3Q76B58 766 aa27.82■■■□□ 2.04
LSM4-203ENST00000593829 HIRIP3Q9BW71 556 aaPredicted RBP27.82■■■□□ 2.04
LSM4-203ENST00000593829 CENPJQ9HC77 1338 aaPredicted RBP27.81■■■□□ 2.04
LSM4-203ENST00000593829 ADGRB2O60241 1585 aa27.81■■■□□ 2.04
LSM4-203ENST00000593829 EIF3AQ14152 1382 aaKnown RBP27.79■■■□□ 2.04
LSM4-203ENST00000593829 NUTM2FA1L443 756 aa27.79■■■□□ 2.04
LSM4-203ENST00000593829 FMN2Q9NZ56 1722 aa27.78■■■□□ 2.04
LSM4-203ENST00000593829 WASLO00401 505 aaPredicted RBP27.77■■■□□ 2.04
LSM4-203ENST00000593829 ORAI2Q96SN7 254 aa27.77■■■□□ 2.04
LSM4-203ENST00000593829 ESCO1Q5FWF5 840 aa27.75■■■□□ 2.03
LSM4-203ENST00000593829 AHDC1Q5TGY3 1603 aaPredicted RBP27.71■■■□□ 2.03
LSM4-203ENST00000593829 QRICH2Q9H0J4 1663 aa27.71■■■□□ 2.03
LSM4-203ENST00000593829 ANKARQ7Z5J8 1434 aa27.7■■■□□ 2.03
LSM4-203ENST00000593829 PHLPP1O60346 1717 aa27.7■■■□□ 2.03
LSM4-203ENST00000593829 CDK19Q9BWU1 502 aa27.69■■■□□ 2.02
LSM4-203ENST00000593829 TULP4Q9NRJ4 1543 aa27.68■■■□□ 2.02
LSM4-203ENST00000593829 NHSL1Q5SYE7 1610 aa27.67■■■□□ 2.02
LSM4-203ENST00000593829 DDX17Q92841 729 aaKnown RBP27.66■■■□□ 2.02
LSM4-203ENST00000593829 USP32Q8NFA0 1604 aa27.65■■■□□ 2.02
LSM4-203ENST00000593829 PRR36Q9H6K5 1346 aa27.65■■■□□ 2.02
LSM4-203ENST00000593829 COL16A1Q07092 1604 aaPredicted RBP27.65■■■□□ 2.02
LSM4-203ENST00000593829 PHF8Q9UPP1 1060 aa27.65■■■□□ 2.02
LSM4-203ENST00000593829 RGPD8O14715 1765 aaPredicted RBP27.64■■■□□ 2.02
LSM4-203ENST00000593829 NUDT16Q96DE0 195 aaKnown RBP27.63■■■□□ 2.01
LSM4-203ENST00000593829 NPHP3Q7Z494 1330 aa27.63■■■□□ 2.01
LSM4-203ENST00000593829 FOXO3O43524 673 aa27.63■■■□□ 2.01
LSM4-203ENST00000593829 SBNO2Q9Y2G9 1366 aa27.63■■■□□ 2.01
LSM4-203ENST00000593829 KIF1AQ12756 1690 aa27.62■■■□□ 2.01
LSM4-203ENST00000593829 EVC2Q86UK5 1308 aa27.62■■■□□ 2.01
LSM4-203ENST00000593829 SRPK2P78362 688 aaKnown RBP27.62■■■□□ 2.01
LSM4-203ENST00000593829 ATP7BP35670 1465 aa27.61■■■□□ 2.01
LSM4-203ENST00000593829 USP47Q96K76 1375 aa27.6■■■□□ 2.01
LSM4-203ENST00000593829 SOS2Q07890 1332 aaPredicted RBP27.6■■■□□ 2.01
LSM4-203ENST00000593829 ST20-MTHFSA0A0A6YYL1 179 aa27.59■■■□□ 2.01
LSM4-203ENST00000593829 LRRC59Q96AG4 307 aaKnown RBP27.59■■■□□ 2.01
LSM4-203ENST00000593829 CABP2Q9NPB3 220 aa27.59■■■□□ 2.01
LSM4-203ENST00000593829 PMFBP1Q8TBY8 1022 aa27.58■■■□□ 2.01
LSM4-203ENST00000593829 JCADQ9P266 1359 aa27.58■■■□□ 2.01
LSM4-203ENST00000593829 CCDC61Q9Y6R9 512 aa27.57■■■□□ 2
LSM4-203ENST00000593829 ITSN1Q15811 1721 aa27.55■■■□□ 2
LSM4-203ENST00000593829 PXDNQ92626 1479 aa27.54■■■□□ 2
LSM4-203ENST00000593829 XPCQ01831 940 aaPredicted RBP27.54■■■□□ 2
LSM4-203ENST00000593829 SLC24A1O60721 1099 aa27.53■■■□□ 2
LSM4-203ENST00000593829 PSME1Q06323 249 aa27.53■■■□□ 2
LSM4-203ENST00000593829 KRT28Q7Z3Y7 464 aa27.53■■■□□ 2
LSM4-203ENST00000593829 TESK2Q96S53 571 aa27.53■■■□□ 2
LSM4-203ENST00000593829 NGDNQ8NEJ9 315 aaKnown RBP27.52■■■□□ 2
LSM4-203ENST00000593829 TOPAZ1Q8N9V7 1692 aa27.51■■□□□ 1.99
LSM4-203ENST00000593829 PLEKHG3A1L390 1219 aa27.5■■□□□ 1.99
LSM4-203ENST00000593829 PPIP5K1Q6PFW1 1433 aa27.49■■□□□ 1.99
LSM4-203ENST00000593829 SHPRHQ149N8 1683 aa27.48■■□□□ 1.99
LSM4-203ENST00000593829 ATAD2Q6PL18 1390 aa27.47■■□□□ 1.99
LSM4-203ENST00000593829 PNPLA6Q8IY17 1366 aa27.46■■□□□ 1.99
LSM4-203ENST00000593829 ACEP12821 1306 aa27.46■■□□□ 1.99
LSM4-203ENST00000593829 SPATA31A6Q5VVP1 1343 aa27.46■■□□□ 1.99
LSM4-203ENST00000593829 EIF4G2P78344 907 aaKnown RBP eCLIP27.45■■□□□ 1.99
LSM4-203ENST00000593829 CABP1Q9NZU7 370 aa27.45■■□□□ 1.99
LSM4-203ENST00000593829 POLR3AO14802 1390 aaPredicted RBP27.45■■□□□ 1.99
LSM4-203ENST00000593829 PUS7Q96PZ0 661 aaKnown RBP27.44■■□□□ 1.98
LSM4-203ENST00000593829 SPATA31A3Q5VYP0 1347 aa27.44■■□□□ 1.98
LSM4-203ENST00000593829 SBNO1A3KN83 1393 aa27.43■■□□□ 1.98
LSM4-203ENST00000593829 TMF1P82094 1093 aa27.43■■□□□ 1.98
LSM4-203ENST00000593829 MED1Q15648 1581 aaPredicted RBP27.41■■□□□ 1.98
LSM4-203ENST00000593829 TNS3Q68CZ2 1445 aa27.41■■□□□ 1.98
LSM4-203ENST00000593829 HSPA5P11021 654 aaKnown RBP27.39■■□□□ 1.98
LSM4-203ENST00000593829 DISP3Q9P2K9 1392 aa27.39■■□□□ 1.97
LSM4-203ENST00000593829 NUTM2BA6NNL0 878 aaPredicted RBP27.37■■□□□ 1.97
LSM4-203ENST00000593829 NUTM2EB1AL46 878 aaPredicted RBP27.37■■□□□ 1.97
LSM4-203ENST00000593829 NUTM2AQ8IVF1 878 aaPredicted RBP27.37■■□□□ 1.97
LSM4-203ENST00000593829 TRPM3Q9HCF6 1732 aaPredicted RBP27.37■■□□□ 1.97
LSM4-203ENST00000593829 LMOD2Q6P5Q4 547 aa27.37■■□□□ 1.97
LSM4-203ENST00000593829 ARHGEF10O15013 1369 aa27.36■■□□□ 1.97
LSM4-203ENST00000593829 PAK3O75914 559 aaPredicted RBP27.36■■□□□ 1.97
LSM4-203ENST00000593829 CDCA8Q53HL2 280 aa27.36■■□□□ 1.97
LSM4-203ENST00000593829 DIEXFQ68CQ4 756 aaKnown RBP27.36■■□□□ 1.97
LSM4-203ENST00000593829 COL22A1Q8NFW1 1626 aaPredicted RBP27.36■■□□□ 1.97
LSM4-203ENST00000593829 TMC1Q8TDI8 760 aa27.35■■□□□ 1.97
LSM4-203ENST00000593829 LRP6O75581 1613 aa27.34■■□□□ 1.97
LSM4-203ENST00000593829 ZNF692Q9BU19 519 aaPredicted RBP27.33■■□□□ 1.97
LSM4-203ENST00000593829 BRD4O60885 1362 aaPredicted RBP27.32■■□□□ 1.96
LSM4-203ENST00000593829 CENPBP07199 599 aaPredicted RBP27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms