RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 SIRT1Q96EB6 747 aa30.75■■■□□ 2.51
ATG4D-209ENST00000588857 KCNA6P17658 529 aa30.74■■■□□ 2.51
ATG4D-209ENST00000588857 FAM135BQ49AJ0 1406 aa30.73■■■□□ 2.51
ATG4D-209ENST00000588857 PIK3R4Q99570 1358 aa30.72■■■□□ 2.51
ATG4D-209ENST00000588857 EVC2Q86UK5 1308 aa30.72■■■□□ 2.51
ATG4D-209ENST00000588857 MIER1Q8N108 512 aa30.72■■■□□ 2.51
ATG4D-209ENST00000588857 LRRC7Q96NW7 1537 aa30.71■■■□□ 2.51
ATG4D-209ENST00000588857 WAPLQ7Z5K2 1190 aa30.71■■■□□ 2.51
ATG4D-209ENST00000588857 PTPRUQ92729 1446 aa30.7■■■□□ 2.51
ATG4D-209ENST00000588857 MINK1Q8N4C8 1332 aaPredicted RBP30.69■■■□□ 2.5
ATG4D-209ENST00000588857 STRCP1A6NGW2 1772 aa30.69■■■□□ 2.5
ATG4D-209ENST00000588857 AMOTL2Q9Y2J4 779 aa30.69■■■□□ 2.5
ATG4D-209ENST00000588857 TULP4Q9NRJ4 1543 aa30.68■■■□□ 2.5
ATG4D-209ENST00000588857 PLEKHH1Q9ULM0 1364 aa30.67■■■□□ 2.5
ATG4D-209ENST00000588857 CHD2O14647 1828 aaKnown RBP30.66■■■□□ 2.5
ATG4D-209ENST00000588857 XRN1Q8IZH2 1706 aaKnown RBP30.66■■■□□ 2.5
ATG4D-209ENST00000588857 ANP32CO43423 234 aa30.66■■■□□ 2.5
ATG4D-209ENST00000588857 TOM1O60784 492 aa30.66■■■□□ 2.5
ATG4D-209ENST00000588857 ROBO2Q9HCK4 1378 aa30.66■■■□□ 2.5
ATG4D-209ENST00000588857 MYOM1P52179 1685 aa30.65■■■□□ 2.5
ATG4D-209ENST00000588857 PUS7Q96PZ0 661 aaKnown RBP30.64■■■□□ 2.5
ATG4D-209ENST00000588857 PTCH1Q13635 1447 aa30.62■■■□□ 2.49
ATG4D-209ENST00000588857 PROSER2Q86WR7 435 aaPredicted RBP30.6■■■□□ 2.49
ATG4D-209ENST00000588857 SRPK2P78362 688 aaKnown RBP30.59■■■□□ 2.49
ATG4D-209ENST00000588857 PANK3Q9H999 370 aa30.58■■■□□ 2.49
ATG4D-209ENST00000588857 CABP2Q9NPB3 220 aa30.57■■■□□ 2.48
ATG4D-209ENST00000588857 TMEM94Q12767 1356 aa30.57■■■□□ 2.48
ATG4D-209ENST00000588857 CDK19Q9BWU1 502 aa30.56■■■□□ 2.48
ATG4D-209ENST00000588857 PIP4K2BP78356 416 aa30.55■■■□□ 2.48
ATG4D-209ENST00000588857 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.55■■■□□ 2.48
ATG4D-209ENST00000588857 NWD1Q149M9 1564 aa30.54■■■□□ 2.48
ATG4D-209ENST00000588857 NKTRP30414 1462 aaKnown RBP30.54■■■□□ 2.48
ATG4D-209ENST00000588857 TMC1Q8TDI8 760 aa30.54■■■□□ 2.48
ATG4D-209ENST00000588857 RBM33Q96EV2 1170 aaKnown RBP30.53■■■□□ 2.48
ATG4D-209ENST00000588857 ATAD2Q6PL18 1390 aa30.52■■■□□ 2.48
ATG4D-209ENST00000588857 ADGRB2O60241 1585 aa30.52■■■□□ 2.48
ATG4D-209ENST00000588857 SCAF1Q9H7N4 1312 aaKnown RBP30.51■■■□□ 2.48
ATG4D-209ENST00000588857 WASLO00401 505 aaPredicted RBP30.51■■■□□ 2.47
ATG4D-209ENST00000588857 NINLQ9Y2I6 1382 aa30.48■■■□□ 2.47
ATG4D-209ENST00000588857 PER1O15534 1290 aaPredicted RBP30.47■■■□□ 2.47
ATG4D-209ENST00000588857 SLC12A5Q9H2X9 1139 aa30.47■■■□□ 2.47
ATG4D-209ENST00000588857 PRKRIP1Q9H875 184 aaPredicted RBP30.45■■■□□ 2.46
ATG4D-209ENST00000588857 KNSTRNQ9Y448 316 aa30.45■■■□□ 2.46
ATG4D-209ENST00000588857 XIRP1Q702N8 1843 aaKnown RBP30.42■■■□□ 2.46
ATG4D-209ENST00000588857 CNGB1Q14028 1251 aaPredicted RBP30.41■■■□□ 2.46
ATG4D-209ENST00000588857 NCOA3Q9Y6Q9 1424 aa30.41■■■□□ 2.46
ATG4D-209ENST00000588857 MSH6P52701 1360 aa30.39■■■□□ 2.46
ATG4D-209ENST00000588857 KTN1Q86UP2 1357 aaKnown RBP30.39■■■□□ 2.45
ATG4D-209ENST00000588857 ANKRD36BQ8N2N9 1353 aa30.39■■■□□ 2.45
ATG4D-209ENST00000588857 CCER2I3L3R5 266 aa30.38■■■□□ 2.45
ATG4D-209ENST00000588857 HSPA1LP34931 641 aa30.38■■■□□ 2.45
ATG4D-209ENST00000588857 NUDT16Q96DE0 195 aaKnown RBP30.38■■■□□ 2.45
ATG4D-209ENST00000588857 NALCNQ8IZF0 1738 aa30.37■■■□□ 2.45
ATG4D-209ENST00000588857 TERF2IPQ9NYB0 399 aa30.37■■■□□ 2.45
ATG4D-209ENST00000588857 CARD14Q9BXL6 1004 aa30.36■■■□□ 2.45
ATG4D-209ENST00000588857 CABP1Q9NZU7 370 aa30.36■■■□□ 2.45
ATG4D-209ENST00000588857 C14orf37Q86TY3 774 aa30.35■■■□□ 2.45
ATG4D-209ENST00000588857 CCDC61Q9Y6R9 512 aa30.34■■■□□ 2.45
ATG4D-209ENST00000588857 ATP7BP35670 1465 aa30.33■■■□□ 2.45
ATG4D-209ENST00000588857 PPIP5K1Q6PFW1 1433 aa30.33■■■□□ 2.45
ATG4D-209ENST00000588857 RALBP1Q15311 655 aa30.33■■■□□ 2.45
ATG4D-209ENST00000588857 C19orf44Q9H6X5 657 aa30.33■■■□□ 2.45
ATG4D-209ENST00000588857 CC2D1BQ5T0F9 858 aaKnown RBP30.32■■■□□ 2.45
ATG4D-209ENST00000588857 NSD3Q9BZ95 1437 aa30.32■■■□□ 2.44
ATG4D-209ENST00000588857 HDGFL2Q7Z4V5 671 aaPredicted RBP30.32■■■□□ 2.44
ATG4D-209ENST00000588857 ADGRL3Q9HAR2 1447 aa30.31■■■□□ 2.44
ATG4D-209ENST00000588857 CDC42BPGQ6DT37 1551 aa30.31■■■□□ 2.44
ATG4D-209ENST00000588857 AMER1Q5JTC6 1135 aaPredicted RBP30.31■■■□□ 2.44
ATG4D-209ENST00000588857 ITSN1Q15811 1721 aa30.31■■■□□ 2.44
ATG4D-209ENST00000588857 FMN2Q9NZ56 1722 aa30.31■■■□□ 2.44
ATG4D-209ENST00000588857 A0A1W2PP64 1363 aa30.3■■■□□ 2.44
ATG4D-209ENST00000588857 TOPAZ1Q8N9V7 1692 aa30.3■■■□□ 2.44
ATG4D-209ENST00000588857 NPC1L1Q9UHC9 1359 aa30.3■■■□□ 2.44
ATG4D-209ENST00000588857 PRR36Q9H6K5 1346 aa30.29■■■□□ 2.44
ATG4D-209ENST00000588857 SLAIN2Q9P270 581 aa30.29■■■□□ 2.44
ATG4D-209ENST00000588857 USP32Q8NFA0 1604 aa30.29■■■□□ 2.44
ATG4D-209ENST00000588857 CD163L1Q9NR16 1453 aa30.29■■■□□ 2.44
ATG4D-209ENST00000588857 PARD3Q8TEW0 1356 aa30.28■■■□□ 2.44
ATG4D-209ENST00000588857 RGPD8O14715 1765 aaPredicted RBP30.28■■■□□ 2.44
ATG4D-209ENST00000588857 NUTM2FA1L443 756 aa30.28■■■□□ 2.44
ATG4D-209ENST00000588857 CADPS2Q86UW7 1296 aa30.26■■■□□ 2.43
ATG4D-209ENST00000588857 ANKARQ7Z5J8 1434 aa30.25■■■□□ 2.43
ATG4D-209ENST00000588857 ATF3P18847 181 aa30.25■■■□□ 2.43
ATG4D-209ENST00000588857 CGNL1Q0VF96 1302 aa30.24■■■□□ 2.43
ATG4D-209ENST00000588857 AKAP12Q02952 1782 aa30.24■■■□□ 2.43
ATG4D-209ENST00000588857 MYBBP1AQ9BQG0 1328 aaKnown RBP30.22■■■□□ 2.43
ATG4D-209ENST00000588857 CPSF1Q10570 1443 aaKnown RBP30.2■■■□□ 2.43
ATG4D-209ENST00000588857 PLEKHG3A1L390 1219 aa30.2■■■□□ 2.42
ATG4D-209ENST00000588857 MON2Q7Z3U7 1717 aa30.19■■■□□ 2.42
ATG4D-209ENST00000588857 ZNF692Q9BU19 519 aaPredicted RBP30.18■■■□□ 2.42
ATG4D-209ENST00000588857 DCCP43146 1447 aa30.17■■■□□ 2.42
ATG4D-209ENST00000588857 NSD2O96028 1365 aa30.17■■■□□ 2.42
ATG4D-209ENST00000588857 MRS2Q9HD23 443 aa30.16■■■□□ 2.42
ATG4D-209ENST00000588857 KIF20BQ96Q89 1820 aa30.16■■■□□ 2.42
ATG4D-209ENST00000588857 ACEP12821 1306 aa30.15■■■□□ 2.42
ATG4D-209ENST00000588857 EDC4Q6P2E9 1401 aaKnown RBP30.14■■■□□ 2.42
ATG4D-209ENST00000588857 NLRP13Q86W25 1043 aa30.13■■■□□ 2.41
ATG4D-209ENST00000588857 CCDC184Q52MB2 194 aa30.12■■■□□ 2.41
ATG4D-209ENST00000588857 ANKRD26Q9UPS8 1709 aa30.12■■■□□ 2.41
ATG4D-209ENST00000588857 MORC1Q86VD1 984 aa30.11■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms