RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 KIAA0556O60303 1618 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 HTATSF1O43719 755 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 BAG6P46379 1132 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 CEBPAP49715 358 aaPredicted RBP3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 ZC3H6P61129 1189 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 GRM1Q13255 1194 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 CPLX2Q6PUV4 134 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 GNL3LQ9NVN8 582 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 KDM5CP41229 1560 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 APPP05067 770 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 KCNH5Q8NCM2 988 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 ZNF652Q9Y2D9 606 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 RALBP1Q15311 655 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 CCDC27Q2M243 656 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 ITPRIPQ8IWB1 547 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 TMEM87AQ8NBN3 555 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 AK7Q96M32 723 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 KIF3AQ9Y496 699 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 PLEKHH2Q8IVE3 1493 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 TRIM6-TRIM34B2RNG4 842 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 XPCQ01831 940 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 NBR1Q14596 966 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 KIF15Q9NS87 1388 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 SLC4A3P48751 1232 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 HSPA2P54652 639 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 G3BP1Q13283 466 aaKnown RBP eCLIP3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 MYOM3Q5VTT5 1437 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 TCERG1O14776 1098 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 AIMP1Q12904 312 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 GAS2L2Q8NHY3 880 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 TRIM44Q96DX7 344 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 STK32BQ9NY57 414 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 STRCQ7RTU9 1775 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 COL17A1Q9UMD9 1497 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 PLIN1O60240 522 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 STARD3NLO95772 234 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 BICDL1Q6ZP65 573 aa3.63□□□□□ -1.83
SMCHD1-203ENST00000577880 TRDNQ13061 729 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 ZSCAN29Q8IWY8 852 aaPredicted RBP3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 LRRC59Q96AG4 307 aaKnown RBP3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 VPS8Q8N3P4 1428 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 ROCK1Q13464 1354 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 ERICH2A1L162 156 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 ELL2O00472 640 aaPredicted RBP3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 TMEM132EQ6IEE7 984 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 TSPYL4Q9UJ04 414 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 SETD1AO15047 1707 aaKnown RBP3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 FOXO3O43524 673 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 NF2P35240 595 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 RGS3P49796 1198 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 TMEM132AQ24JP5 1023 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 PAF1Q8N7H5 531 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 CDK19Q9BWU1 502 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 KIAA1210Q9ULL0 1709 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 SLC3A2P08195 630 aaKnown RBP3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 FKBP5Q13451 457 aaPredicted RBP3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 GPR162Q16538 588 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 KANK4Q5T7N3 995 aaPredicted RBP3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 ZNF530Q6P9A1 599 aaPredicted RBP3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 MPHOSPH8Q99549 860 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 TMOD3Q9NYL9 352 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 PHF8Q9UPP1 1060 aa3.62□□□□□ -1.83
SMCHD1-203ENST00000577880 ST20-MTHFSA0A0A6YYL1 179 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 HSPA5P11021 654 aaKnown RBP3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 MTHFSP49914 203 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 ZNF710Q8N1W2 664 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 NECTIN2Q92692 538 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 PRAM1Q96QH2 718 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 RWDD1Q9H446 243 aaPredicted RBP3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 TBC1D2BQ9UPU7 963 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 SPDYE4A6NLX3 237 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 PTMAP06454 111 aaKnown RBP3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 PNISRQ8TF01 805 aaKnown RBP3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 NEUROD6Q96NK8 337 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 NWD1Q149M9 1564 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 IGF1RP08069 1367 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 MPHOSPH10O00566 681 aaKnown RBP3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 FYB1O15117 783 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 MYCNP04198 464 aaPredicted RBP3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 IFIT2P09913 472 aaKnown RBP3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 PLCB2Q00722 1185 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 HSP90AB4PQ58FF6 505 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 L3MBTL2Q969R5 705 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 BCL2L13Q9BXK5 485 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 CABP2Q9NPB3 220 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 CNNM1Q9NRU3 951 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 AMOTL2Q9Y2J4 779 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 MAGI3Q5TCQ9 1506 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 RPGRIP1LQ68CZ1 1315 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 KRT28Q7Z3Y7 464 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 RPGRQ92834 1020 aaKnown RBP3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 ZNF622Q969S3 477 aaKnown RBP eCLIP3.61□□□□□ -1.832e-6■■□□□ 13.1
SMCHD1-203ENST00000577880 ZNF219Q9P2Y4 722 aaPredicted RBP3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 NPHP3Q7Z494 1330 aa3.61□□□□□ -1.83
SMCHD1-203ENST00000577880 LMOD1P29536 600 aaPredicted RBP3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 RFC4P35249 363 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 WDR78Q5VTH9 848 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 CCDC47Q96A33 483 aaKnown RBP3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 DENND4BO75064 1496 aaPredicted RBP3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 ARAP3Q8WWN8 1544 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms