RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 ADGRL1O94910 1474 aa21.9■■□□□ 1.1
VPS53-215ENST00000573028 ABCA6Q8N139 1617 aa21.9■■□□□ 1.1
VPS53-215ENST00000573028 CFAP53Q96M91 514 aa21.9■■□□□ 1.1
VPS53-215ENST00000573028 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.89■■□□□ 1.09
VPS53-215ENST00000573028 SPRYD3Q8NCJ5 442 aa21.88■■□□□ 1.09
VPS53-215ENST00000573028 CFAP65Q6ZU64 1925 aaKnown RBP21.88■■□□□ 1.09
VPS53-215ENST00000573028 MAP3K4Q9Y6R4 1608 aa21.88■■□□□ 1.09
VPS53-215ENST00000573028 PDZRN3Q9UPQ7 1066 aa21.87■■□□□ 1.09
VPS53-215ENST00000573028 BECN1Q14457 450 aa21.87■■□□□ 1.09
VPS53-215ENST00000573028 PMFBP1Q8TBY8 1022 aa21.87■■□□□ 1.09
VPS53-215ENST00000573028 U2SURPO15042 1029 aaKnown RBP21.86■■□□□ 1.09
VPS53-215ENST00000573028 UPF2Q9HAU5 1272 aaKnown RBP21.86■■□□□ 1.09
VPS53-215ENST00000573028 TSR2Q969E8 191 aaKnown RBP21.85■■□□□ 1.09
VPS53-215ENST00000573028 FTSJ3Q8IY81 847 aaKnown RBP21.85■■□□□ 1.09
VPS53-215ENST00000573028 ARXQ96QS3 562 aa21.85■■□□□ 1.09
VPS53-215ENST00000573028 CABP2Q9NPB3 220 aa21.84■■□□□ 1.09
VPS53-215ENST00000573028 UHRF1BP1LA0JNW5 1464 aa21.84■■□□□ 1.09
VPS53-215ENST00000573028 STK26Q9P289 416 aa21.84■■□□□ 1.09
VPS53-215ENST00000573028 MYOM2P54296 1465 aa21.83■■□□□ 1.09
VPS53-215ENST00000573028 DEPDC5O75140 1603 aa21.83■■□□□ 1.08
VPS53-215ENST00000573028 C14orf93Q9H972 538 aaKnown RBP21.82■■□□□ 1.08
VPS53-215ENST00000573028 NINLQ9Y2I6 1382 aa21.82■■□□□ 1.08
VPS53-215ENST00000573028 WDR63Q8IWG1 891 aa21.81■■□□□ 1.08
VPS53-215ENST00000573028 RWDD1Q9H446 243 aaPredicted RBP21.81■■□□□ 1.08
VPS53-215ENST00000573028 POGKQ9P215 609 aa21.81■■□□□ 1.08
VPS53-215ENST00000573028 MYH16Q9H6N6 1097 aa21.81■■□□□ 1.08
VPS53-215ENST00000573028 KIF1BO60333 1816 aa21.79■■□□□ 1.08
VPS53-215ENST00000573028 SMC4Q9NTJ3 1288 aa21.79■■□□□ 1.08
VPS53-215ENST00000573028 KIAA1210Q9ULL0 1709 aa21.79■■□□□ 1.08
VPS53-215ENST00000573028 GGNBP2Q9H3C7 697 aa21.78■■□□□ 1.08
VPS53-215ENST00000573028 VWDEQ8N2E2 1590 aa21.78■■□□□ 1.08
VPS53-215ENST00000573028 SBNO2Q9Y2G9 1366 aa21.77■■□□□ 1.08
VPS53-215ENST00000573028 INO80Q9ULG1 1556 aaPredicted RBP21.77■■□□□ 1.08
VPS53-215ENST00000573028 SRPK2P78362 688 aaKnown RBP21.77■■□□□ 1.08
VPS53-215ENST00000573028 ZKSCAN2Q63HK3 967 aa21.77■■□□□ 1.08
VPS53-215ENST00000573028 MROH2AA6NES4 1674 aa21.76■■□□□ 1.07
VPS53-215ENST00000573028 EXOSC9Q06265 439 aaKnown RBP21.76■■□□□ 1.07
VPS53-215ENST00000573028 DZIP1LQ8IYY4 767 aaKnown RBP21.76■■□□□ 1.07
VPS53-215ENST00000573028 EVC2Q86UK5 1308 aa21.76■■□□□ 1.07
VPS53-215ENST00000573028 ITPRIPQ8IWB1 547 aa21.76■■□□□ 1.07
VPS53-215ENST00000573028 EFCAB6Q5THR3 1501 aa21.75■■□□□ 1.07
VPS53-215ENST00000573028 MVPQ14764 893 aaKnown RBP21.75■■□□□ 1.07
VPS53-215ENST00000573028 MFAP1P55081 439 aaKnown RBP21.75■■□□□ 1.07
VPS53-215ENST00000573028 MROH1Q8NDA8 1641 aa21.75■■□□□ 1.07
VPS53-215ENST00000573028 PHF23Q9BUL5 403 aaPredicted RBP21.74■■□□□ 1.07
VPS53-215ENST00000573028 TBC1D2Q9BYX2 928 aa21.73■■□□□ 1.07
VPS53-215ENST00000573028 ARAP3Q8WWN8 1544 aa21.73■■□□□ 1.07
VPS53-215ENST00000573028 PPRC1Q5VV67 1664 aaKnown RBP21.73■■□□□ 1.07
VPS53-215ENST00000573028 TBC1D32Q96NH3 1257 aa21.72■■□□□ 1.07
VPS53-215ENST00000573028 NPATQ14207 1427 aa21.72■■□□□ 1.07
VPS53-215ENST00000573028 ASXL2Q76L83 1435 aa21.71■■□□□ 1.07
VPS53-215ENST00000573028 ZNF518AQ6AHZ1 1483 aa21.71■■□□□ 1.07
VPS53-215ENST00000573028 NPM1P06748 294 aaKnown RBP eCLIP21.7■■□□□ 1.07
VPS53-215ENST00000573028 SHPRHQ149N8 1683 aa21.7■■□□□ 1.06
VPS53-215ENST00000573028 CCDC27Q2M243 656 aa21.7■■□□□ 1.06
VPS53-215ENST00000573028 SSH1Q8WYL5 1049 aa21.7■■□□□ 1.06
VPS53-215ENST00000573028 TRIM27P14373 513 aa21.69■■□□□ 1.06
VPS53-215ENST00000573028 ABCA9Q8IUA7 1624 aa21.69■■□□□ 1.06
VPS53-215ENST00000573028 GZF1Q9H116 711 aaPredicted RBP21.68■■□□□ 1.06
VPS53-215ENST00000573028 MINK1Q8N4C8 1332 aaPredicted RBP21.68■■□□□ 1.06
VPS53-215ENST00000573028 IQSEC2Q5JU85 1478 aa21.68■■□□□ 1.06
VPS53-215ENST00000573028 NRXN1Q9ULB1 1477 aa21.68■■□□□ 1.06
VPS53-215ENST00000573028 AAMPQ13685 434 aa21.68■■□□□ 1.06
VPS53-215ENST00000573028 VGFO15240 615 aaPredicted RBP21.67■■□□□ 1.06
VPS53-215ENST00000573028 TMPOP42166 694 aaKnown RBP21.67■■□□□ 1.06
VPS53-215ENST00000573028 QRICH2Q9H0J4 1663 aa21.67■■□□□ 1.06
VPS53-215ENST00000573028 EIF5BO60841 1220 aaKnown RBP21.67■■□□□ 1.06
VPS53-215ENST00000573028 NOB1Q9ULX3 412 aaKnown RBP21.67■■□□□ 1.06
VPS53-215ENST00000573028 NLRP1Q9C000 1473 aa21.66■■□□□ 1.06
VPS53-215ENST00000573028 RAPGEF3O95398 923 aa21.66■■□□□ 1.06
VPS53-215ENST00000573028 ADGRB3O60242 1522 aa21.66■■□□□ 1.06
VPS53-215ENST00000573028 ANKRD36BQ8N2N9 1353 aa21.65■■□□□ 1.06
VPS53-215ENST00000573028 RIPK4P57078 832 aa21.65■■□□□ 1.06
VPS53-215ENST00000573028 C22orf23Q9BZE7 217 aa21.65■■□□□ 1.06
VPS53-215ENST00000573028 ANTXR1Q9H6X2 564 aa21.65■■□□□ 1.06
VPS53-215ENST00000573028 KIDINS220Q9ULH0 1771 aa21.64■■□□□ 1.05
VPS53-215ENST00000573028 IFT172Q9UG01 1749 aa21.63■■□□□ 1.05
VPS53-215ENST00000573028 TMEM57Q8N5G2 664 aa21.63■■□□□ 1.05
VPS53-215ENST00000573028 TRIM35Q9UPQ4 493 aa21.63■■□□□ 1.05
VPS53-215ENST00000573028 NEURL4Q96JN8 1562 aa21.63■■□□□ 1.05
VPS53-215ENST00000573028 FBLN1P23142 703 aa21.63■■□□□ 1.05
VPS53-215ENST00000573028 ATF7IPQ6VMQ6 1270 aa21.63■■□□□ 1.05
VPS53-215ENST00000573028 MYO3AQ8NEV4 1616 aa21.62■■□□□ 1.05
VPS53-215ENST00000573028 ADGRB1O14514 1584 aa21.62■■□□□ 1.05
VPS53-215ENST00000573028 DDX19BQ9UMR2 479 aa21.62■■□□□ 1.05
VPS53-215ENST00000573028 RPGRIP1LQ68CZ1 1315 aa21.62■■□□□ 1.05
VPS53-215ENST00000573028 A0A1W2PP64 1363 aa21.61■■□□□ 1.05
VPS53-215ENST00000573028 IDI1Q13907 227 aa21.61■■□□□ 1.05
VPS53-215ENST00000573028 SETBP1Q9Y6X0 1596 aa21.61■■□□□ 1.05
VPS53-215ENST00000573028 LNPKQ9C0E8 428 aa21.6■■□□□ 1.05
VPS53-215ENST00000573028 VIRMAQ69YN4 1812 aaKnown RBP21.6■■□□□ 1.05
VPS53-215ENST00000573028 PRAM1Q96QH2 718 aa21.59■■□□□ 1.05
VPS53-215ENST00000573028 PLEKHF1Q96S99 279 aa21.59■■□□□ 1.05
VPS53-215ENST00000573028 FYB1O15117 783 aa21.58■■□□□ 1.05
VPS53-215ENST00000573028 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.58■■□□□ 1.054e-6■■■■□ 21.2
VPS53-215ENST00000573028 CD109Q6YHK3 1445 aa21.57■■□□□ 1.04
VPS53-215ENST00000573028 TULP4Q9NRJ4 1543 aa21.57■■□□□ 1.04
VPS53-215ENST00000573028 DIAPH1O60610 1272 aaKnown RBP21.57■■□□□ 1.04
VPS53-215ENST00000573028 TERF2IPQ9NYB0 399 aa21.57■■□□□ 1.04
VPS53-215ENST00000573028 ELL2O00472 640 aaPredicted RBP21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 120.9 ms