RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PTPRUQ92729 1446 aa29.82■■■□□ 2.36
VPS53-210ENST00000571456 RGL3Q3MIN7 710 aa29.81■■■□□ 2.36
VPS53-210ENST00000571456 MYOM2P54296 1465 aa29.79■■■□□ 2.36
VPS53-210ENST00000571456 ADAMTS2O95450 1211 aa29.78■■■□□ 2.36
VPS53-210ENST00000571456 DDX17Q92841 729 aaKnown RBP29.77■■■□□ 2.36
VPS53-210ENST00000571456 XRN1Q8IZH2 1706 aaKnown RBP29.75■■■□□ 2.35
VPS53-210ENST00000571456 USP21Q9UK80 565 aa29.73■■■□□ 2.35
VPS53-210ENST00000571456 TRPC5Q9UL62 973 aaPredicted RBP29.73■■■□□ 2.35
VPS53-210ENST00000571456 CCDC125Q86Z20 511 aa29.72■■■□□ 2.35
VPS53-210ENST00000571456 NRXN1Q9ULB1 1477 aa29.7■■■□□ 2.35
VPS53-210ENST00000571456 SIN3AQ96ST3 1273 aa29.7■■■□□ 2.35
VPS53-210ENST00000571456 NRXN3Q9Y4C0 1643 aa29.69■■■□□ 2.34
VPS53-210ENST00000571456 CCER1Q8TC90 406 aaPredicted RBP29.68■■■□□ 2.34
VPS53-210ENST00000571456 DCAF11Q8TEB1 546 aa29.67■■■□□ 2.34
VPS53-210ENST00000571456 LAMC1P11047 1609 aa29.67■■■□□ 2.34
VPS53-210ENST00000571456 PIK3C2GO75747 1445 aa29.66■■■□□ 2.34
VPS53-210ENST00000571456 NEUROD1Q13562 356 aa29.66■■■□□ 2.34
VPS53-210ENST00000571456 ATRNO75882 1429 aa29.65■■■□□ 2.34
VPS53-210ENST00000571456 ADGRL3Q9HAR2 1447 aa29.65■■■□□ 2.34
VPS53-210ENST00000571456 FNBP4Q8N3X1 1017 aaPredicted RBP29.65■■■□□ 2.34
VPS53-210ENST00000571456 TIMELESSQ9UNS1 1208 aa29.64■■■□□ 2.34
VPS53-210ENST00000571456 ADGRF5Q8IZF2 1346 aa29.64■■■□□ 2.34
VPS53-210ENST00000571456 TONSLQ96HA7 1378 aa29.63■■■□□ 2.33
VPS53-210ENST00000571456 PTCH1Q13635 1447 aa29.62■■■□□ 2.33
VPS53-210ENST00000571456 NALCNQ8IZF0 1738 aa29.62■■■□□ 2.33
VPS53-210ENST00000571456 C1orf167Q5SNV9 1468 aa29.58■■■□□ 2.33
VPS53-210ENST00000571456 L3MBTL2Q969R5 705 aa29.58■■■□□ 2.33
VPS53-210ENST00000571456 METP08581 1390 aa29.57■■■□□ 2.32
VPS53-210ENST00000571456 SOS2Q07890 1332 aaPredicted RBP29.57■■■□□ 2.32
VPS53-210ENST00000571456 KDM2AQ9Y2K7 1162 aa29.56■■■□□ 2.32
VPS53-210ENST00000571456 KIAA1210Q9ULL0 1709 aa29.56■■■□□ 2.32
VPS53-210ENST00000571456 C14orf93Q9H972 538 aaKnown RBP29.55■■■□□ 2.32
VPS53-210ENST00000571456 COL22A1Q8NFW1 1626 aaPredicted RBP29.53■■■□□ 2.32
VPS53-210ENST00000571456 PRAG1Q86YV5 1406 aa29.52■■■□□ 2.32
VPS53-210ENST00000571456 BCL9LQ86UU0 1499 aa29.5■■■□□ 2.31
VPS53-210ENST00000571456 LRP5O75197 1615 aa29.5■■■□□ 2.31
VPS53-210ENST00000571456 MARF1Q9Y4F3 1742 aaKnown RBP29.48■■■□□ 2.31
VPS53-210ENST00000571456 BLMP54132 1417 aaPredicted RBP29.48■■■□□ 2.31
VPS53-210ENST00000571456 ORAI2Q96SN7 254 aa29.48■■■□□ 2.31
VPS53-210ENST00000571456 GJD4Q96KN9 370 aaPredicted RBP29.47■■■□□ 2.31
VPS53-210ENST00000571456 CFAP70Q5T0N1 1121 aa29.44■■■□□ 2.3
VPS53-210ENST00000571456 KNDC1Q76NI1 1749 aa29.43■■■□□ 2.3
VPS53-210ENST00000571456 LRPPRCP42704 1394 aaKnown RBP29.42■■■□□ 2.3
VPS53-210ENST00000571456 TECPR2O15040 1411 aa29.42■■■□□ 2.3
VPS53-210ENST00000571456 DEFB132Q7Z7B7 95 aa29.41■■■□□ 2.3
VPS53-210ENST00000571456 ABCC11Q96J66 1382 aa29.4■■■□□ 2.3
VPS53-210ENST00000571456 ADGRB1O14514 1584 aa29.4■■■□□ 2.3
VPS53-210ENST00000571456 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.4■■■□□ 2.3
VPS53-210ENST00000571456 YTHDC2Q9H6S0 1430 aaKnown RBP29.39■■■□□ 2.3
VPS53-210ENST00000571456 BRWD3Q6RI45 1802 aa29.38■■■□□ 2.29
VPS53-210ENST00000571456 TRPM1Q7Z4N2 1603 aa29.38■■■□□ 2.29
VPS53-210ENST00000571456 SIRT1Q96EB6 747 aa29.38■■■□□ 2.29
VPS53-210ENST00000571456 SF3B2Q13435 895 aaKnown RBP29.36■■■□□ 2.29
VPS53-210ENST00000571456 DLC1Q96QB1 1528 aa29.35■■■□□ 2.29
VPS53-210ENST00000571456 GLI3P10071 1580 aa29.35■■■□□ 2.29
VPS53-210ENST00000571456 TMEM132EQ6IEE7 984 aa29.33■■■□□ 2.29
VPS53-210ENST00000571456 NPHP3Q7Z494 1330 aa29.33■■■□□ 2.29
VPS53-210ENST00000571456 RALGAPBQ86X10 1494 aa29.33■■■□□ 2.29
VPS53-210ENST00000571456 ROBO2Q9HCK4 1378 aa29.32■■■□□ 2.28
VPS53-210ENST00000571456 UNC5CLQ8IV45 518 aa29.31■■■□□ 2.28
VPS53-210ENST00000571456 PXDNQ92626 1479 aa29.3■■■□□ 2.28
VPS53-210ENST00000571456 ROCK2O75116 1388 aaKnown RBP29.28■■■□□ 2.28
VPS53-210ENST00000571456 GPRASP1Q5JY77 1395 aa29.28■■■□□ 2.28
VPS53-210ENST00000571456 NBPF8Q3BBV2 869 aa29.27■■■□□ 2.28
VPS53-210ENST00000571456 SLIT2O94813 1529 aa29.26■■■□□ 2.27
VPS53-210ENST00000571456 ESCO1Q5FWF5 840 aa29.26■■■□□ 2.27
VPS53-210ENST00000571456 STK26Q9P289 416 aa29.26■■■□□ 2.27
VPS53-210ENST00000571456 PSDA5PKW4 1024 aaPredicted RBP29.24■■■□□ 2.27
VPS53-210ENST00000571456 XPCQ01831 940 aaPredicted RBP29.23■■■□□ 2.27
VPS53-210ENST00000571456 NBPF1Q3BBV0 1214 aa29.23■■■□□ 2.27
VPS53-210ENST00000571456 SEPT12Q8IYM1 358 aa29.23■■■□□ 2.27
VPS53-210ENST00000571456 FOXO3O43524 673 aa29.22■■■□□ 2.27
VPS53-210ENST00000571456 ARHGEF28Q8N1W1 1705 aaKnown RBP29.22■■■□□ 2.27
VPS53-210ENST00000571456 EIF3AQ14152 1382 aaKnown RBP29.2■■■□□ 2.26
VPS53-210ENST00000571456 CDC42BPGQ6DT37 1551 aa29.19■■■□□ 2.26
VPS53-210ENST00000571456 TRAK1Q9UPV9 953 aa29.19■■■□□ 2.26
VPS53-210ENST00000571456 POGKQ9P215 609 aa29.18■■■□□ 2.26
VPS53-210ENST00000571456 CARD11Q9BXL7 1154 aa29.16■■■□□ 2.26
VPS53-210ENST00000571456 BAG6P46379 1132 aa29.15■■■□□ 2.26
VPS53-210ENST00000571456 KRT27Q7Z3Y8 459 aa29.15■■■□□ 2.26
VPS53-210ENST00000571456 PRAM1Q96QH2 718 aa29.15■■■□□ 2.26
VPS53-210ENST00000571456 USP32Q8NFA0 1604 aa29.15■■■□□ 2.26
VPS53-210ENST00000571456 ONECUT3O60422 494 aaPredicted RBP29.13■■■□□ 2.25
VPS53-210ENST00000571456 VPS72Q15906 364 aa29.13■■■□□ 2.25
VPS53-210ENST00000571456 WAPLQ7Z5K2 1190 aa29.12■■■□□ 2.25
VPS53-210ENST00000571456 ADGRB2O60241 1585 aa29.11■■■□□ 2.25
VPS53-210ENST00000571456 SPATA31A3Q5VYP0 1347 aa29.1■■■□□ 2.25
VPS53-210ENST00000571456 PLEKHH1Q9ULM0 1364 aa29.1■■■□□ 2.25
VPS53-210ENST00000571456 NWD2Q9ULI1 1742 aa29.09■■■□□ 2.25
VPS53-210ENST00000571456 CENPJQ9HC77 1338 aaPredicted RBP29.09■■■□□ 2.25
VPS53-210ENST00000571456 CCDC9Q9Y3X0 531 aaKnown RBP29.08■■■□□ 2.25
VPS53-210ENST00000571456 SLC24A1O60721 1099 aa29.07■■■□□ 2.24
VPS53-210ENST00000571456 PLCH1Q4KWH8 1693 aa29.07■■■□□ 2.24
VPS53-210ENST00000571456 SBNO2Q9Y2G9 1366 aa29.04■■■□□ 2.24
VPS53-210ENST00000571456 NUTM2FA1L443 756 aa29.04■■■□□ 2.24
VPS53-210ENST00000571456 HAP1P54257 671 aaPredicted RBP29.04■■■□□ 2.24
VPS53-210ENST00000571456 QRICH2Q9H0J4 1663 aa29.04■■■□□ 2.24
VPS53-210ENST00000571456 R3HDM1Q15032 1099 aaKnown RBP29.02■■■□□ 2.24
VPS53-210ENST00000571456 RGPD1P0DJD0 1748 aa29.02■■■□□ 2.24
VPS53-210ENST00000571456 KIF1AQ12756 1690 aa29.02■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 210.8 ms