RNA–Protein interactions for RNA: ENST00000568454.5

TSC2-222, Transcript of TSC complex subunit 2, human

APPRIS ALT2 TSL 2 BASIC

Gene TSC2, Length 5,434 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-222	ENST00000568454	NUTM2D	Q5VT03	806 aa	Predicted RBP	19.99	■□□□□ 0.79
TSC2-222	ENST00000568454	RRP9	O43818	475 aa	Known RBP	19.99	■□□□□ 0.79
TSC2-222	ENST00000568454	VGF	O15240	615 aa	Predicted RBP	19.98	■□□□□ 0.79
TSC2-222	ENST00000568454	EID1	Q9Y6B2	187 aa		19.98	■□□□□ 0.79
TSC2-222	ENST00000568454	FBXW7	Q969H0	707 aa		19.98	■□□□□ 0.79
TSC2-222	ENST00000568454	SDF4	Q9BRK5	362 aa		19.98	■□□□□ 0.79
TSC2-222	ENST00000568454	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	19.97	■□□□□ 0.79
TSC2-222	ENST00000568454	FKBP5	Q13451	457 aa	Predicted RBP	19.97	■□□□□ 0.79
TSC2-222	ENST00000568454	BACH2	Q9BYV9	841 aa		19.97	■□□□□ 0.79
TSC2-222	ENST00000568454	DHX8	Q14562	1220 aa	Known RBP	19.97	■□□□□ 0.79
TSC2-222	ENST00000568454	RDX	P35241	583 aa	Known RBP	19.97	■□□□□ 0.79
TSC2-222	ENST00000568454	CCDC191	Q8NCU4	936 aa		19.97	■□□□□ 0.79
TSC2-222	ENST00000568454	MIA2	Q96PC5	1412 aa		19.97	■□□□□ 0.79
TSC2-222	ENST00000568454	PSMA5	P28066	241 aa		19.97	■□□□□ 0.79
TSC2-222	ENST00000568454	DDX58	O95786	925 aa	Known RBP	19.96	■□□□□ 0.79
TSC2-222	ENST00000568454	RBM10	P98175	930 aa	Known RBP	19.96	■□□□□ 0.79
TSC2-222	ENST00000568454	PRPF40A	O75400	957 aa	Known RBP	19.96	■□□□□ 0.79
TSC2-222	ENST00000568454	LEKR1	Q6ZMV7	388 aa		19.96	■□□□□ 0.79
TSC2-222	ENST00000568454	NINL	Q9Y2I6	1382 aa		19.96	■□□□□ 0.79
TSC2-222	ENST00000568454	GTF2E1	P29083	439 aa	Predicted RBP	19.96	■□□□□ 0.79
TSC2-222	ENST00000568454		G3V3G9	751 aa		19.95	■□□□□ 0.78
TSC2-222	ENST00000568454	DCAF8	Q5TAQ9	597 aa		19.95	■□□□□ 0.78
TSC2-222	ENST00000568454	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	19.95	■□□□□ 0.78
TSC2-222	ENST00000568454	GRPEL1	Q9HAV7	217 aa		19.95	■□□□□ 0.78
TSC2-222	ENST00000568454	AMOTL1	Q8IY63	956 aa		19.95	■□□□□ 0.78
TSC2-222	ENST00000568454	APP	P05067	770 aa		19.95	■□□□□ 0.78
TSC2-222	ENST00000568454	PDC	P20941	246 aa		19.94	■□□□□ 0.78
TSC2-222	ENST00000568454	NFXL1	Q6ZNB6	911 aa		19.94	■□□□□ 0.78
TSC2-222	ENST00000568454	NAP1L1	P55209	391 aa	Known RBP	19.94	■□□□□ 0.78
TSC2-222	ENST00000568454	EIF2S2	P20042	333 aa	Known RBP	19.94	■□□□□ 0.78
TSC2-222	ENST00000568454	PDILT	Q8N807	584 aa		19.94	■□□□□ 0.78
TSC2-222	ENST00000568454	CWC22	Q9HCG8	908 aa	Known RBP	19.94	■□□□□ 0.78
TSC2-222	ENST00000568454	PDE3A	Q14432	1141 aa		19.93	■□□□□ 0.78
TSC2-222	ENST00000568454	CAGE1	Q8TC20	777 aa		19.93	■□□□□ 0.78
TSC2-222	ENST00000568454	PDZRN3	Q9UPQ7	1066 aa		19.93	■□□□□ 0.78
TSC2-222	ENST00000568454	ERICH2	A1L162	156 aa		19.93	■□□□□ 0.78
TSC2-222	ENST00000568454	KIN	O60870	393 aa	Known RBP	19.93	■□□□□ 0.78
TSC2-222	ENST00000568454	STAC3	Q96MF2	364 aa		19.93	■□□□□ 0.78
TSC2-222	ENST00000568454	RALYL	Q86SE5	291 aa	Known RBP	19.91	■□□□□ 0.78
TSC2-222	ENST00000568454	WASHC2A	Q641Q2	1341 aa		19.9	■□□□□ 0.78
TSC2-222	ENST00000568454	NEK4	P51957	841 aa		19.9	■□□□□ 0.78
TSC2-222	ENST00000568454	ESPN	B1AK53	854 aa		19.9	■□□□□ 0.78
TSC2-222	ENST00000568454	CNTROB	Q8N137	903 aa		19.9	■□□□□ 0.78
TSC2-222	ENST00000568454	TTC5	Q8N0Z6	440 aa		19.89	■□□□□ 0.78
TSC2-222	ENST00000568454	NOL10	Q9BSC4	688 aa	Known RBP	19.89	■□□□□ 0.77
TSC2-222	ENST00000568454	SMC2	O95347	1197 aa		19.89	■□□□□ 0.77
TSC2-222	ENST00000568454	CCDC112	Q8NEF3	446 aa		19.89	■□□□□ 0.77
TSC2-222	ENST00000568454	FOSB	P53539	338 aa		19.89	■□□□□ 0.77
TSC2-222	ENST00000568454	GCC1	Q96CN9	775 aa		19.89	■□□□□ 0.77
TSC2-222	ENST00000568454	FANCD2	Q9BXW9	1451 aa		19.88	■□□□□ 0.77
TSC2-222	ENST00000568454	BCL11B	Q9C0K0	894 aa	Predicted RBP	19.88	■□□□□ 0.77
TSC2-222	ENST00000568454	CIZ1	Q9ULV3	898 aa	Predicted RBP	19.88	■□□□□ 0.77
TSC2-222	ENST00000568454	UQCRHL	A0A096LP55	91 aa		19.88	■□□□□ 0.77
TSC2-222	ENST00000568454	UQCRH	P07919	91 aa		19.88	■□□□□ 0.77
TSC2-222	ENST00000568454	SMARCE1	Q969G3	411 aa		19.88	■□□□□ 0.77
TSC2-222	ENST00000568454	ADAMTS8	Q9UP79	889 aa		19.88	■□□□□ 0.77
TSC2-222	ENST00000568454	MYO6	Q9UM54	1294 aa		19.88	■□□□□ 0.77
TSC2-222	ENST00000568454	CCDC192	P0DO97	292 aa		19.87	■□□□□ 0.77
TSC2-222	ENST00000568454	NUTM2F	A1L443	756 aa		19.87	■□□□□ 0.77
TSC2-222	ENST00000568454	CCDC27	Q2M243	656 aa		19.87	■□□□□ 0.77
TSC2-222	ENST00000568454	MINK1	Q8N4C8	1332 aa	Predicted RBP	19.86	■□□□□ 0.77
TSC2-222	ENST00000568454	TSPYL4	Q9UJ04	414 aa		19.86	■□□□□ 0.77
TSC2-222	ENST00000568454	FILIP1L	Q4L180	1135 aa		19.86	■□□□□ 0.77
TSC2-222	ENST00000568454	CDCA7L	Q96GN5	454 aa		19.86	■□□□□ 0.77
TSC2-222	ENST00000568454	TSPYL1	Q9H0U9	437 aa		19.85	■□□□□ 0.77
TSC2-222	ENST00000568454	BRMS1	Q9HCU9	246 aa		19.85	■□□□□ 0.77
TSC2-222	ENST00000568454	MYOM3	Q5VTT5	1437 aa		19.85	■□□□□ 0.77
TSC2-222	ENST00000568454	UBTFL1	P0CB47	393 aa	Predicted RBP	19.85	■□□□□ 0.77
TSC2-222	ENST00000568454		K7ELQ4	463 aa	Predicted RBP	19.85	■□□□□ 0.77
TSC2-222	ENST00000568454	OFD1	O75665	1012 aa		19.85	■□□□□ 0.77
TSC2-222	ENST00000568454	NECTIN2	Q92692	538 aa		19.85	■□□□□ 0.77
TSC2-222	ENST00000568454	FIBP	O43427	364 aa		19.85	■□□□□ 0.77
TSC2-222	ENST00000568454	JPH4	Q96JJ6	628 aa		19.85	■□□□□ 0.77
TSC2-222	ENST00000568454	ZNF396	Q96N95	335 aa	Predicted RBP	19.85	■□□□□ 0.77
TSC2-222	ENST00000568454	GNAI3	P08754	354 aa		19.84	■□□□□ 0.77
TSC2-222	ENST00000568454	TCEAL9	Q9UHQ7	104 aa		19.84	■□□□□ 0.77
TSC2-222	ENST00000568454	XBP1	P17861	261 aa		19.84	■□□□□ 0.77
TSC2-222	ENST00000568454	MCM4	P33991	863 aa		19.84	■□□□□ 0.77
TSC2-222	ENST00000568454	FGD6	Q6ZV73	1430 aa		19.83	■□□□□ 0.77
TSC2-222	ENST00000568454	WDR33	Q9C0J8	1336 aa	Known RBP	19.83	■□□□□ 0.77
TSC2-222	ENST00000568454	AXDND1	Q5T1B0	1012 aa	Predicted RBP	19.83	■□□□□ 0.77
TSC2-222	ENST00000568454	SPC24	Q8NBT2	197 aa		19.83	■□□□□ 0.77
TSC2-222	ENST00000568454	SMG6	Q86US8	1419 aa	Known RBP	19.83	■□□□□ 0.76
TSC2-222	ENST00000568454	HIP1	O00291	1037 aa		19.83	■□□□□ 0.76
TSC2-222	ENST00000568454	PIP4K2A	P48426	406 aa	Predicted RBP	19.82	■□□□□ 0.76
TSC2-222	ENST00000568454	CT47A1	Q5JQC4	288 aa	Predicted RBP	19.82	■□□□□ 0.76
TSC2-222	ENST00000568454	TAF3	Q5VWG9	929 aa		19.82	■□□□□ 0.76
TSC2-222	ENST00000568454	AEBP1	Q8IUX7	1158 aa		19.82	■□□□□ 0.76
TSC2-222	ENST00000568454	IGF1R	P08069	1367 aa		19.82	■□□□□ 0.76
TSC2-222	ENST00000568454	DHX16	O60231	1041 aa	Known RBP	19.82	■□□□□ 0.76
TSC2-222	ENST00000568454	ERLIN1	O75477	346 aa		19.81	■□□□□ 0.76
TSC2-222	ENST00000568454	CLASRP	Q8N2M8	674 aa	Known RBP	19.81	■□□□□ 0.76
TSC2-222	ENST00000568454	AKNA	Q7Z591	1439 aa		19.81	■□□□□ 0.76
TSC2-222	ENST00000568454	TCP11L2	Q8N4U5	519 aa		19.81	■□□□□ 0.76
TSC2-222	ENST00000568454	WWC1	Q8IX03	1113 aa		19.81	■□□□□ 0.76
TSC2-222	ENST00000568454	EIF3J	O75822	258 aa	Known RBP	19.8	■□□□□ 0.76
TSC2-222	ENST00000568454	TTLL5	Q6EMB2	1281 aa		19.8	■□□□□ 0.76
TSC2-222	ENST00000568454	CUX1	P39880	1505 aa		19.8	■□□□□ 0.76
TSC2-222	ENST00000568454	ZSCAN30	Q86W11	494 aa		19.8	■□□□□ 0.76
TSC2-222	ENST00000568454	FSD1	Q9BTV5	496 aa		19.8	■□□□□ 0.76

Retrieved 100 of 20,778 RNA–protein pairs in 144.2 ms