RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-208ENST00000563911 PCDHB15Q9Y5E8 787 aa10.8□□□□□ -0.68
HERPUD1-208ENST00000563911 NUTM2BA6NNL0 878 aaPredicted RBP10.79□□□□□ -0.68
HERPUD1-208ENST00000563911 NUTM2EB1AL46 878 aaPredicted RBP10.79□□□□□ -0.68
HERPUD1-208ENST00000563911 CFHP08603 1231 aa10.79□□□□□ -0.68
HERPUD1-208ENST00000563911 NUTM2DQ5VT03 806 aaPredicted RBP10.79□□□□□ -0.68
HERPUD1-208ENST00000563911 FBXO31Q5XUX0 539 aaPredicted RBP10.79□□□□□ -0.68
HERPUD1-208ENST00000563911 PPP2R2DQ66LE6 453 aa10.79□□□□□ -0.68
HERPUD1-208ENST00000563911 NUTM2AQ8IVF1 878 aaPredicted RBP10.79□□□□□ -0.68
HERPUD1-208ENST00000563911 LRCH3Q96II8 777 aa10.79□□□□□ -0.68
HERPUD1-208ENST00000563911 IFT140Q96RY7 1462 aa10.79□□□□□ -0.68
HERPUD1-208ENST00000563911 GOLGA8CPA6NN73 597 aa10.78□□□□□ -0.68
HERPUD1-208ENST00000563911 FDX1P10109 184 aa10.78□□□□□ -0.68
HERPUD1-208ENST00000563911 MCM6Q14566 821 aa10.78□□□□□ -0.68
HERPUD1-208ENST00000563911 QPCTQ16769 361 aa10.78□□□□□ -0.68
HERPUD1-208ENST00000563911 AQRO60306 1485 aaKnown RBP eCLIP10.78□□□□□ -0.681e-6■■■■□ 24.3
HERPUD1-208ENST00000563911 TOP2AP11388 1531 aaKnown RBP10.78□□□□□ -0.68
HERPUD1-208ENST00000563911 HRO43593 1189 aa10.77□□□□□ -0.69
HERPUD1-208ENST00000563911 UBTFP17480 764 aaKnown RBP10.77□□□□□ -0.69
HERPUD1-208ENST00000563911 GRIPAP1Q4V328 841 aa10.77□□□□□ -0.69
HERPUD1-208ENST00000563911 TMEM259Q4ZIN3 620 aa10.77□□□□□ -0.69
HERPUD1-208ENST00000563911 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.77□□□□□ -0.69
HERPUD1-208ENST00000563911 TOPBP1Q92547 1522 aa10.77□□□□□ -0.69
HERPUD1-208ENST00000563911 LILRB3O75022 631 aa10.76□□□□□ -0.69
HERPUD1-208ENST00000563911 FUT2Q10981 343 aa10.76□□□□□ -0.69
HERPUD1-208ENST00000563911 CCDC88BA6NC98 1476 aa10.75□□□□□ -0.69
HERPUD1-208ENST00000563911 GUCA2AQ02747 115 aa10.75□□□□□ -0.69
HERPUD1-208ENST00000563911 KMT5BQ4FZB7 885 aa10.75□□□□□ -0.69
HERPUD1-208ENST00000563911 PRPF38BQ5VTL8 546 aaKnown RBP10.75□□□□□ -0.69
HERPUD1-208ENST00000563911 BANK1Q8NDB2 785 aa10.75□□□□□ -0.69
HERPUD1-208ENST00000563911 CABLES1Q8TDN4 633 aa10.75□□□□□ -0.69
HERPUD1-208ENST00000563911 NECTIN2Q92692 538 aa10.75□□□□□ -0.69
HERPUD1-208ENST00000563911 HLA-CQ95604 372 aa10.75□□□□□ -0.69
HERPUD1-208ENST00000563911 EIF4G3O43432 1585 aaKnown RBP10.74□□□□□ -0.69
HERPUD1-208ENST00000563911 RTL5Q5HYW3 569 aaPredicted RBP10.74□□□□□ -0.69
HERPUD1-208ENST00000563911 ANKK1Q8NFD2 765 aa10.74□□□□□ -0.69
HERPUD1-208ENST00000563911 ZBTB3Q9H5J0 574 aa10.74□□□□□ -0.69
HERPUD1-208ENST00000563911 PCDHGC3Q9UN70 934 aa10.74□□□□□ -0.69
HERPUD1-208ENST00000563911 HRCP23327 699 aa10.73□□□□□ -0.69
HERPUD1-208ENST00000563911 ATP6V1AP38606 617 aa10.73□□□□□ -0.69
HERPUD1-208ENST00000563911 CLUAP1Q96AJ1 413 aa10.73□□□□□ -0.69
HERPUD1-208ENST00000563911 SNRKQ9NRH2 765 aa10.73□□□□□ -0.69
HERPUD1-208ENST00000563911 SPDYE5A6NIY4 337 aa10.72□□□□□ -0.69
HERPUD1-208ENST00000563911 AP1G2O75843 785 aa10.72□□□□□ -0.69
HERPUD1-208ENST00000563911 CHD1O14646 1710 aa10.72□□□□□ -0.69
HERPUD1-208ENST00000563911 TARBP1Q13395 1621 aaKnown RBP10.71□□□□□ -0.69
HERPUD1-208ENST00000563911 RAD21O60216 631 aa10.7□□□□□ -0.7
HERPUD1-208ENST00000563911 PPP4CP60510 307 aa10.7□□□□□ -0.7
HERPUD1-208ENST00000563911 WNT2BQ93097 391 aa10.7□□□□□ -0.7
HERPUD1-208ENST00000563911 SOWAHBA6NEL2 793 aa10.69□□□□□ -0.7
HERPUD1-208ENST00000563911 A6NJR5 290 aa10.69□□□□□ -0.7
HERPUD1-208ENST00000563911 C6orf229H3BNL8 230 aa10.69□□□□□ -0.7
HERPUD1-208ENST00000563911 MTMR2Q13614 643 aa10.69□□□□□ -0.7
HERPUD1-208ENST00000563911 HPS5Q9UPZ3 1129 aa10.69□□□□□ -0.7
HERPUD1-208ENST00000563911 ACTN4O43707 911 aaKnown RBP10.68□□□□□ -0.7
HERPUD1-208ENST00000563911 BCAMP50895 628 aa10.68□□□□□ -0.7
HERPUD1-208ENST00000563911 PRR14Q9BWN1 585 aa10.68□□□□□ -0.7
HERPUD1-208ENST00000563911 RAD54L2Q9Y4B4 1467 aa10.68□□□□□ -0.7
HERPUD1-208ENST00000563911 PRDM2Q13029 1718 aa10.67□□□□□ -0.7
HERPUD1-208ENST00000563911 PUS10Q3MIT2 529 aaKnown RBP10.67□□□□□ -0.7
HERPUD1-208ENST00000563911 POM121Q96HA1 1249 aa10.67□□□□□ -0.7
HERPUD1-208ENST00000563911 TSR3Q9UJK0 312 aaKnown RBP10.67□□□□□ -0.7
HERPUD1-208ENST00000563911 TDRD9Q8NDG6 1382 aaKnown RBP10.66□□□□□ -0.7
HERPUD1-208ENST00000563911 TSC1Q92574 1164 aa10.66□□□□□ -0.7
HERPUD1-208ENST00000563911 DNMBPQ6XZF7 1577 aa10.65□□□□□ -0.7
HERPUD1-208ENST00000563911 MORN1Q5T089 497 aa10.65□□□□□ -0.7
HERPUD1-208ENST00000563911 SYMPKQ92797 1274 aaKnown RBP10.65□□□□□ -0.7
HERPUD1-208ENST00000563911 POLA1P09884 1462 aaPredicted RBP10.65□□□□□ -0.7
HERPUD1-208ENST00000563911 USP17L8P0C7I0 530 aa10.64□□□□□ -0.71
HERPUD1-208ENST00000563911 MTMR14Q8NCE2 650 aa10.64□□□□□ -0.71
HERPUD1-208ENST00000563911 KRTAP3-3Q9BYR6 98 aa10.64□□□□□ -0.71
HERPUD1-208ENST00000563911 KRTAP3-2Q9BYR7 98 aa10.64□□□□□ -0.71
HERPUD1-208ENST00000563911 TRAK2O60296 914 aa10.63□□□□□ -0.71
HERPUD1-208ENST00000563911 APLP1P51693 650 aa10.63□□□□□ -0.71
HERPUD1-208ENST00000563911 CTDSPL2Q05D32 466 aa10.63□□□□□ -0.71
HERPUD1-208ENST00000563911 HELBQ8NG08 1087 aaPredicted RBP10.63□□□□□ -0.71
HERPUD1-208ENST00000563911 SLC27A5Q9Y2P5 690 aa10.63□□□□□ -0.71
HERPUD1-208ENST00000563911 COG6Q9Y2V7 657 aa10.63□□□□□ -0.71
HERPUD1-208ENST00000563911 CLASP1Q7Z460 1538 aa10.63□□□□□ -0.71
HERPUD1-208ENST00000563911 ARID3CA6NKF2 412 aa10.62□□□□□ -0.71
HERPUD1-208ENST00000563911 APBB1O00213 710 aa10.62□□□□□ -0.71
HERPUD1-208ENST00000563911 Q3C1V9 767 aa10.62□□□□□ -0.71
HERPUD1-208ENST00000563911 PROSER2Q86WR7 435 aaPredicted RBP10.62□□□□□ -0.71
HERPUD1-208ENST00000563911 PRM3Q9NNZ6 103 aa10.62□□□□□ -0.71
HERPUD1-208ENST00000563911 CFAP99D6REC4 459 aa10.61□□□□□ -0.71
HERPUD1-208ENST00000563911 ABCC8Q09428 1581 aa10.6□□□□□ -0.71
HERPUD1-208ENST00000563911 PRR7Q8TB68 274 aa10.6□□□□□ -0.71
HERPUD1-208ENST00000563911 GDPD2Q9HCC8 539 aa10.6□□□□□ -0.71
HERPUD1-208ENST00000563911 PCDHB3Q9Y5E6 796 aa10.6□□□□□ -0.71
HERPUD1-208ENST00000563911 WBP1LQ9NX94 342 aa10.59□□□□□ -0.71
HERPUD1-208ENST00000563911 SNAPC4Q5SXM2 1469 aa10.59□□□□□ -0.71
HERPUD1-208ENST00000563911 SOGA1O94964 1423 aa10.58□□□□□ -0.72
HERPUD1-208ENST00000563911 RETREG3Q86VR2 466 aa10.58□□□□□ -0.72
HERPUD1-208ENST00000563911 KCTD12Q96CX2 325 aaKnown RBP10.58□□□□□ -0.72
HERPUD1-208ENST00000563911 SOCS7O14512 581 aa10.57□□□□□ -0.72
HERPUD1-208ENST00000563911 NR1I2O75469 434 aa10.57□□□□□ -0.72
HERPUD1-208ENST00000563911 SCUBE3Q8IX30 993 aa10.57□□□□□ -0.72
HERPUD1-208ENST00000563911 ABL2P42684 1182 aa10.56□□□□□ -0.72
HERPUD1-208ENST00000563911 BLOC1S3Q6QNY0 202 aa10.56□□□□□ -0.72
HERPUD1-208ENST00000563911 THSD4Q6ZMP0 1018 aa10.56□□□□□ -0.72
HERPUD1-208ENST00000563911 RNF19BQ6ZMZ0 732 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 175.7 ms