RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 DLC1Q96QB1 1528 aa12.35□□□□□ -0.43
UBR1-204ENST00000563239 MST1RQ04912 1400 aa12.35□□□□□ -0.43
UBR1-204ENST00000563239 KIAA1210Q9ULL0 1709 aa12.34□□□□□ -0.43
UBR1-204ENST00000563239 ROBO1Q9Y6N7 1651 aa12.34□□□□□ -0.43
UBR1-204ENST00000563239 NBPF8Q3BBV2 869 aa12.33□□□□□ -0.44
UBR1-204ENST00000563239 PRAM1Q96QH2 718 aa12.33□□□□□ -0.44
UBR1-204ENST00000563239 TRAK1Q9UPV9 953 aa12.33□□□□□ -0.44
UBR1-204ENST00000563239 CDC42BPGQ6DT37 1551 aa12.31□□□□□ -0.44
UBR1-204ENST00000563239 BRINP3Q76B58 766 aa12.31□□□□□ -0.44
UBR1-204ENST00000563239 C1orf167Q5SNV9 1468 aa12.31□□□□□ -0.44
UBR1-204ENST00000563239 TONSLQ96HA7 1378 aa12.3□□□□□ -0.44
UBR1-204ENST00000563239 TRPM1Q7Z4N2 1603 aa12.3□□□□□ -0.44
UBR1-204ENST00000563239 CLSPNQ9HAW4 1339 aa12.3□□□□□ -0.44
UBR1-204ENST00000563239 ARHGEF28Q8N1W1 1705 aaKnown RBP12.29□□□□□ -0.44
UBR1-204ENST00000563239 SAFB2Q14151 953 aaKnown RBP eCLIP12.29□□□□□ -0.44
UBR1-204ENST00000563239 ORAI2Q96SN7 254 aa12.28□□□□□ -0.44
UBR1-204ENST00000563239 POGKQ9P215 609 aa12.28□□□□□ -0.44
UBR1-204ENST00000563239 ADGRB2O60241 1585 aa12.27□□□□□ -0.44
UBR1-204ENST00000563239 AHDC1Q5TGY3 1603 aaPredicted RBP12.27□□□□□ -0.44
UBR1-204ENST00000563239 FMN2Q9NZ56 1722 aa12.27□□□□□ -0.45
UBR1-204ENST00000563239 GPRASP1Q5JY77 1395 aa12.27□□□□□ -0.45
UBR1-204ENST00000563239 COL16A1Q07092 1604 aaPredicted RBP12.26□□□□□ -0.45
UBR1-204ENST00000563239 NUTM2FA1L443 756 aa12.25□□□□□ -0.45
UBR1-204ENST00000563239 DDX17Q92841 729 aaKnown RBP12.25□□□□□ -0.45
UBR1-204ENST00000563239 HIRIP3Q9BW71 556 aaPredicted RBP12.25□□□□□ -0.45
UBR1-204ENST00000563239 MINK1Q8N4C8 1332 aaPredicted RBP12.25□□□□□ -0.45
UBR1-204ENST00000563239 NHSL1Q5SYE7 1610 aa12.25□□□□□ -0.45
UBR1-204ENST00000563239 PHLPP1O60346 1717 aa12.25□□□□□ -0.45
UBR1-204ENST00000563239 ROCK2O75116 1388 aaKnown RBP12.24□□□□□ -0.45
UBR1-204ENST00000563239 MED1Q15648 1581 aaPredicted RBP12.24□□□□□ -0.45
UBR1-204ENST00000563239 RALGAPBQ86X10 1494 aa12.24□□□□□ -0.45
UBR1-204ENST00000563239 USP32Q8NFA0 1604 aa12.24□□□□□ -0.45
UBR1-204ENST00000563239 CCER1Q8TC90 406 aaPredicted RBP12.24□□□□□ -0.45
UBR1-204ENST00000563239 WASLO00401 505 aaPredicted RBP12.23□□□□□ -0.45
UBR1-204ENST00000563239 PRR36Q9H6K5 1346 aa12.22□□□□□ -0.45
UBR1-204ENST00000563239 ESCO1Q5FWF5 840 aa12.22□□□□□ -0.45
UBR1-204ENST00000563239 TIMELESSQ9UNS1 1208 aa12.22□□□□□ -0.45
UBR1-204ENST00000563239 RGPD8O14715 1765 aaPredicted RBP12.21□□□□□ -0.45
UBR1-204ENST00000563239 SOS2Q07890 1332 aaPredicted RBP12.21□□□□□ -0.45
UBR1-204ENST00000563239 CENPJQ9HC77 1338 aaPredicted RBP12.21□□□□□ -0.45
UBR1-204ENST00000563239 ANKARQ7Z5J8 1434 aa12.2□□□□□ -0.46
UBR1-204ENST00000563239 TULP4Q9NRJ4 1543 aa12.2□□□□□ -0.46
UBR1-204ENST00000563239 PXDNQ92626 1479 aa12.2□□□□□ -0.46
UBR1-204ENST00000563239 FOXO3O43524 673 aa12.19□□□□□ -0.46
UBR1-204ENST00000563239 CDK19Q9BWU1 502 aa12.19□□□□□ -0.46
UBR1-204ENST00000563239 CARD11Q9BXL7 1154 aa12.19□□□□□ -0.46
UBR1-204ENST00000563239 QRICH2Q9H0J4 1663 aa12.19□□□□□ -0.46
UBR1-204ENST00000563239 JCADQ9P266 1359 aa12.18□□□□□ -0.46
UBR1-204ENST00000563239 PHF8Q9UPP1 1060 aa12.18□□□□□ -0.46
UBR1-204ENST00000563239 ATP7BP35670 1465 aa12.18□□□□□ -0.46
UBR1-204ENST00000563239 NUDT16Q96DE0 195 aaKnown RBP12.17□□□□□ -0.46
UBR1-204ENST00000563239 EIF3AQ14152 1382 aaKnown RBP12.17□□□□□ -0.46
UBR1-204ENST00000563239 KIF1AQ12756 1690 aa12.16□□□□□ -0.46
UBR1-204ENST00000563239 SHPRHQ149N8 1683 aa12.16□□□□□ -0.46
UBR1-204ENST00000563239 NPHP3Q7Z494 1330 aa12.16□□□□□ -0.46
UBR1-204ENST00000563239 XPCQ01831 940 aaPredicted RBP12.16□□□□□ -0.46
UBR1-204ENST00000563239 PMFBP1Q8TBY8 1022 aa12.16□□□□□ -0.46
UBR1-204ENST00000563239 LRRC59Q96AG4 307 aaKnown RBP12.16□□□□□ -0.46
UBR1-204ENST00000563239 PNPLA6Q8IY17 1366 aa12.16□□□□□ -0.46
UBR1-204ENST00000563239 LRP6O75581 1613 aa12.15□□□□□ -0.47
UBR1-204ENST00000563239 TOPAZ1Q8N9V7 1692 aa12.14□□□□□ -0.47
UBR1-204ENST00000563239 KRT28Q7Z3Y7 464 aa12.14□□□□□ -0.47
UBR1-204ENST00000563239 CABP2Q9NPB3 220 aa12.14□□□□□ -0.47
UBR1-204ENST00000563239 SBNO2Q9Y2G9 1366 aa12.14□□□□□ -0.47
UBR1-204ENST00000563239 TESK2Q96S53 571 aa12.13□□□□□ -0.47
UBR1-204ENST00000563239 SPATA31A6Q5VVP1 1343 aa12.12□□□□□ -0.47
UBR1-204ENST00000563239 PLEKHG3A1L390 1219 aa12.12□□□□□ -0.47
UBR1-204ENST00000563239 CCDC61Q9Y6R9 512 aa12.12□□□□□ -0.47
UBR1-204ENST00000563239 SPATA31A3Q5VYP0 1347 aa12.11□□□□□ -0.47
UBR1-204ENST00000563239 EVC2Q86UK5 1308 aa12.11□□□□□ -0.47
UBR1-204ENST00000563239 COL22A1Q8NFW1 1626 aaPredicted RBP12.11□□□□□ -0.47
UBR1-204ENST00000563239 POLR3AO14802 1390 aaPredicted RBP12.11□□□□□ -0.47
UBR1-204ENST00000563239 ST20-MTHFSA0A0A6YYL1 179 aa12.11□□□□□ -0.47
UBR1-204ENST00000563239 SRPK2P78362 688 aaKnown RBP12.11□□□□□ -0.47
UBR1-204ENST00000563239 RGS17Q9UGC6 210 aaPredicted RBP12.11□□□□□ -0.47
UBR1-204ENST00000563239 ITSN1Q15811 1721 aa12.11□□□□□ -0.47
UBR1-204ENST00000563239 TRPM3Q9HCF6 1732 aaPredicted RBP12.11□□□□□ -0.47
UBR1-204ENST00000563239 SBNO1A3KN83 1393 aa12.1□□□□□ -0.47
UBR1-204ENST00000563239 USP47Q96K76 1375 aa12.1□□□□□ -0.47
UBR1-204ENST00000563239 PSME1Q06323 249 aa12.1□□□□□ -0.47
UBR1-204ENST00000563239 PPIP5K1Q6PFW1 1433 aa12.1□□□□□ -0.47
UBR1-204ENST00000563239 ACEP12821 1306 aa12.1□□□□□ -0.47
UBR1-204ENST00000563239 NGDNQ8NEJ9 315 aaKnown RBP12.09□□□□□ -0.47
UBR1-204ENST00000563239 CABP1Q9NZU7 370 aa12.09□□□□□ -0.47
UBR1-204ENST00000563239 TNS3Q68CZ2 1445 aa12.09□□□□□ -0.47
UBR1-204ENST00000563239 NUTM2BA6NNL0 878 aaPredicted RBP12.08□□□□□ -0.48
UBR1-204ENST00000563239 NUTM2EB1AL46 878 aaPredicted RBP12.08□□□□□ -0.48
UBR1-204ENST00000563239 NUTM2AQ8IVF1 878 aaPredicted RBP12.08□□□□□ -0.48
UBR1-204ENST00000563239 ALS2Q96Q42 1657 aa12.07□□□□□ -0.48
UBR1-204ENST00000563239 PIAS4Q8N2W9 510 aaPredicted RBP12.07□□□□□ -0.48
UBR1-204ENST00000563239 SSH2Q76I76 1423 aa12.05□□□□□ -0.48
UBR1-204ENST00000563239 PUS7Q96PZ0 661 aaKnown RBP12.05□□□□□ -0.48
UBR1-204ENST00000563239 ATAD2Q6PL18 1390 aa12.05□□□□□ -0.48
UBR1-204ENST00000563239 CD163L1Q9NR16 1453 aa12.04□□□□□ -0.48
UBR1-204ENST00000563239 CABLES1Q8TDN4 633 aa12.04□□□□□ -0.48
UBR1-204ENST00000563239 ARHGEF10O15013 1369 aa12.04□□□□□ -0.48
UBR1-204ENST00000563239 CPSF1Q10570 1443 aaKnown RBP12.03□□□□□ -0.48
UBR1-204ENST00000563239 ADAMTS2O95450 1211 aa12.03□□□□□ -0.48
UBR1-204ENST00000563239 POTEAQ6S8J7 498 aa12.03□□□□□ -0.48
UBR1-204ENST00000563239 CRYBG1Q9Y4K1 1723 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms