RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-215ENST00000561436 USP46P62068 366 aa7.77□□□□□ -1.17
HERC1-215ENST00000561436 GRIPAP1Q4V328 841 aa7.77□□□□□ -1.17
HERC1-215ENST00000561436 POLR3EQ9NVU0 708 aa7.77□□□□□ -1.17
HERC1-215ENST00000561436 C6orf229H3BNL8 230 aa7.76□□□□□ -1.17
HERC1-215ENST00000561436 PLA2G2CQ5R387 149 aa7.76□□□□□ -1.17
HERC1-215ENST00000561436 MYSM1Q5VVJ2 828 aa7.76□□□□□ -1.17
HERC1-215ENST00000561436 CABLES1Q8TDN4 633 aa7.76□□□□□ -1.17
HERC1-215ENST00000561436 EMID1Q96A84 441 aaPredicted RBP7.76□□□□□ -1.17
HERC1-215ENST00000561436 RSBN1LQ6PCB5 846 aaPredicted RBP7.75□□□□□ -1.17
HERC1-215ENST00000561436 RIC3Q7Z5B4 369 aa7.74□□□□□ -1.17
HERC1-215ENST00000561436 IL27Q8NEV9 243 aa7.74□□□□□ -1.17
HERC1-215ENST00000561436 PRKD2Q9BZL6 878 aa7.74□□□□□ -1.17
HERC1-215ENST00000561436 FCF1Q9Y324 198 aaKnown RBP7.74□□□□□ -1.17
HERC1-215ENST00000561436 QPCTQ16769 361 aa7.73□□□□□ -1.17
HERC1-215ENST00000561436 Q3C1V9 767 aa7.73□□□□□ -1.17
HERC1-215ENST00000561436 FBXO31Q5XUX0 539 aaPredicted RBP7.73□□□□□ -1.17
HERC1-215ENST00000561436 USB1Q9BQ65 265 aaKnown RBP7.73□□□□□ -1.17
HERC1-215ENST00000561436 SPTLC1O15269 473 aa7.71□□□□□ -1.18
HERC1-215ENST00000561436 GGCXP38435 758 aa7.71□□□□□ -1.18
HERC1-215ENST00000561436 LIAT1Q6ZQX7 453 aa7.71□□□□□ -1.18
HERC1-215ENST00000561436 PROCA1Q8NCQ7 364 aaPredicted RBP7.71□□□□□ -1.18
HERC1-215ENST00000561436 HRCP23327 699 aa7.7□□□□□ -1.18
HERC1-215ENST00000561436 MSS51Q4VC12 460 aa7.7□□□□□ -1.18
HERC1-215ENST00000561436 ATP1B4Q9UN42 357 aaPredicted RBP7.7□□□□□ -1.18
HERC1-215ENST00000561436 SALL2Q9Y467 1007 aaPredicted RBP7.7□□□□□ -1.18
HERC1-215ENST00000561436 CFAP99D6REC4 459 aa7.69□□□□□ -1.18
HERC1-215ENST00000561436 CLK2P49760 499 aaKnown RBP7.69□□□□□ -1.18
HERC1-215ENST00000561436 MTMR2Q13614 643 aa7.69□□□□□ -1.18
HERC1-215ENST00000561436 RETREG3Q86VR2 466 aa7.69□□□□□ -1.18
HERC1-215ENST00000561436 CCDC24Q8N4L8 307 aa7.69□□□□□ -1.18
HERC1-215ENST00000561436 PRR7Q8TB68 274 aa7.69□□□□□ -1.18
HERC1-215ENST00000561436 TSC1Q92574 1164 aa7.69□□□□□ -1.18
HERC1-215ENST00000561436 DXOO77932 396 aaKnown RBP7.68□□□□□ -1.18
HERC1-215ENST00000561436 RTL5Q5HYW3 569 aaPredicted RBP7.68□□□□□ -1.18
HERC1-215ENST00000561436 ANKLE1Q8NAG6 615 aa7.68□□□□□ -1.18
HERC1-215ENST00000561436 JUNDP17535 347 aa7.67□□□□□ -1.18
HERC1-215ENST00000561436 SLC19A1P41440 591 aa7.67□□□□□ -1.18
HERC1-215ENST00000561436 TMEM132AQ24JP5 1023 aa7.67□□□□□ -1.18
HERC1-215ENST00000561436 DDRGK1Q96HY6 314 aa7.67□□□□□ -1.18
HERC1-215ENST00000561436 NUTM2BA6NNL0 878 aaPredicted RBP7.66□□□□□ -1.18
HERC1-215ENST00000561436 NUTM2EB1AL46 878 aaPredicted RBP7.66□□□□□ -1.18
HERC1-215ENST00000561436 MMP16P51512 607 aa7.66□□□□□ -1.18
HERC1-215ENST00000561436 NUTM2DQ5VT03 806 aaPredicted RBP7.66□□□□□ -1.18
HERC1-215ENST00000561436 NUTM2AQ8IVF1 878 aaPredicted RBP7.66□□□□□ -1.18
HERC1-215ENST00000561436 DIXDC1Q155Q3 683 aa7.65□□□□□ -1.18
HERC1-215ENST00000561436 ZBTB3Q9H5J0 574 aa7.65□□□□□ -1.18
HERC1-215ENST00000561436 PER1O15534 1290 aaPredicted RBP7.64□□□□□ -1.19
HERC1-215ENST00000561436 LILRB3O75022 631 aa7.64□□□□□ -1.19
HERC1-215ENST00000561436 SH3D19Q5HYK7 790 aa7.64□□□□□ -1.19
HERC1-215ENST00000561436 PTCRAQ6ISU1 281 aaPredicted RBP7.64□□□□□ -1.19
HERC1-215ENST00000561436 RSPH6AQ9H0K4 717 aa7.64□□□□□ -1.19
HERC1-215ENST00000561436 SKIV2LQ15477 1246 aaKnown RBP7.63□□□□□ -1.19
HERC1-215ENST00000561436 NUDT12Q9BQG2 462 aa7.63□□□□□ -1.19
HERC1-215ENST00000561436 TNFRSF10AO00220 468 aa7.62□□□□□ -1.19
HERC1-215ENST00000561436 SPRYD7Q5W111 196 aa7.62□□□□□ -1.19
HERC1-215ENST00000561436 RGS20O76081 388 aa7.61□□□□□ -1.19
HERC1-215ENST00000561436 GJA5P36382 358 aa7.61□□□□□ -1.19
HERC1-215ENST00000561436 FOXC1Q12948 553 aa7.61□□□□□ -1.19
HERC1-215ENST00000561436 ZNF697Q5TEC3 545 aa7.61□□□□□ -1.19
HERC1-215ENST00000561436 TRIM67Q6ZTA4 783 aa7.61□□□□□ -1.19
HERC1-215ENST00000561436 MAP10Q9P2G4 905 aa7.61□□□□□ -1.19
HERC1-215ENST00000561436 V9GY48 417 aaPredicted RBP7.61□□□□□ -1.19
HERC1-215ENST00000561436 PRPF38BQ5VTL8 546 aaKnown RBP7.6□□□□□ -1.19
HERC1-215ENST00000561436 ERICH6Q7L0X2 663 aa7.6□□□□□ -1.19
HERC1-215ENST00000561436 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.6□□□□□ -1.19
HERC1-215ENST00000561436 CCNYL3P0C7X3 344 aa7.59□□□□□ -1.19
HERC1-215ENST00000561436 CTDSPL2Q05D32 466 aa7.59□□□□□ -1.19
HERC1-215ENST00000561436 TRIM32Q13049 653 aa7.59□□□□□ -1.19
HERC1-215ENST00000561436 LINC01559Q495D7 138 aa7.59□□□□□ -1.19
HERC1-215ENST00000561436 IRX2Q9BZI1 471 aaPredicted RBP7.59□□□□□ -1.19
HERC1-215ENST00000561436 SPDYE5A6NIY4 337 aa7.58□□□□□ -1.2
HERC1-215ENST00000561436 CTHP32929 405 aa7.58□□□□□ -1.2
HERC1-215ENST00000561436 LRRN4Q8WUT4 740 aa7.58□□□□□ -1.2
HERC1-215ENST00000561436 ZBTB24O43167 697 aaPredicted RBP7.57□□□□□ -1.2
HERC1-215ENST00000561436 GFRA3O60609 400 aa7.57□□□□□ -1.2
HERC1-215ENST00000561436 AP1G2O75843 785 aa7.57□□□□□ -1.2
HERC1-215ENST00000561436 SKOR1P84550 965 aa7.57□□□□□ -1.2
HERC1-215ENST00000561436 PTPRNQ16849 979 aa7.57□□□□□ -1.2
HERC1-215ENST00000561436 TUSC1Q2TAM9 212 aa7.57□□□□□ -1.2
HERC1-215ENST00000561436 LYPD8Q6UX82 237 aa7.57□□□□□ -1.2
HERC1-215ENST00000561436 ZNF598Q86UK7 904 aaKnown RBP7.57□□□□□ -1.2
HERC1-215ENST00000561436 PCMTD1Q96MG8 357 aaPredicted RBP7.56□□□□□ -1.2
HERC1-215ENST00000561436 UNC93B1Q9H1C4 597 aa7.56□□□□□ -1.2
HERC1-215ENST00000561436 PKD2L1Q9P0L9 805 aa7.56□□□□□ -1.2
HERC1-215ENST00000561436 PDZRN3Q9UPQ7 1066 aa7.56□□□□□ -1.2
HERC1-215ENST00000561436 RPIAP49247 311 aa7.55□□□□□ -1.2
HERC1-215ENST00000561436 EVA1BQ9NVM1 165 aa7.55□□□□□ -1.2
HERC1-215ENST00000561436 GTF3C3Q9Y5Q9 886 aa7.55□□□□□ -1.2
HERC1-215ENST00000561436 GDF9O60383 454 aa7.54□□□□□ -1.2
HERC1-215ENST00000561436 F12P00748 615 aaPredicted RBP7.54□□□□□ -1.2
HERC1-215ENST00000561436 RFC5P40937 340 aa7.54□□□□□ -1.2
HERC1-215ENST00000561436 KCNH2Q12809 1159 aa7.54□□□□□ -1.2
HERC1-215ENST00000561436 DESI1Q6ICB0 168 aa7.54□□□□□ -1.2
HERC1-215ENST00000561436 HELBQ8NG08 1087 aaPredicted RBP7.54□□□□□ -1.2
HERC1-215ENST00000561436 EPS8L1Q8TE68 723 aa7.54□□□□□ -1.2
HERC1-215ENST00000561436 BAP1Q92560 729 aa7.54□□□□□ -1.2
HERC1-215ENST00000561436 HMX1Q9NP08 348 aaPredicted RBP7.54□□□□□ -1.2
HERC1-215ENST00000561436 CD2BP2O95400 341 aaKnown RBP7.53□□□□□ -1.2
HERC1-215ENST00000561436 SH3BP2P78314 561 aa7.52□□□□□ -1.21
HERC1-215ENST00000561436 PPP2R2DQ66LE6 453 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms