RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 C19orf44Q9H6X5 657 aa14.25□□□□□ -0.13
USP3-216ENST00000559873 PLEKHH1Q9ULM0 1364 aa14.24□□□□□ -0.13
USP3-216ENST00000559873 TOM1O60784 492 aa14.24□□□□□ -0.13
USP3-216ENST00000559873 ATF3P18847 181 aa14.24□□□□□ -0.13
USP3-216ENST00000559873 CADPS2Q86UW7 1296 aa14.24□□□□□ -0.13
USP3-216ENST00000559873 ADGRB2O60241 1585 aa14.24□□□□□ -0.13
USP3-216ENST00000559873 WAPLQ7Z5K2 1190 aa14.23□□□□□ -0.13
USP3-216ENST00000559873 RBM33Q96EV2 1170 aaKnown RBP14.23□□□□□ -0.13
USP3-216ENST00000559873 SAFB2Q14151 953 aaKnown RBP eCLIP14.22□□□□□ -0.13
USP3-216ENST00000559873 USP47Q96K76 1375 aa14.22□□□□□ -0.13
USP3-216ENST00000559873 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.21□□□□□ -0.13
USP3-216ENST00000559873 QRICH2Q9H0J4 1663 aa14.21□□□□□ -0.13
USP3-216ENST00000559873 SBNO2Q9Y2G9 1366 aa14.21□□□□□ -0.14
USP3-216ENST00000559873 UBAP1LF5GYI3 381 aa14.2□□□□□ -0.14
USP3-216ENST00000559873 SLC24A1O60721 1099 aa14.2□□□□□ -0.14
USP3-216ENST00000559873 MINK1Q8N4C8 1332 aaPredicted RBP14.18□□□□□ -0.14
USP3-216ENST00000559873 FMN2Q9NZ56 1722 aa14.17□□□□□ -0.14
USP3-216ENST00000559873 MST1RQ04912 1400 aa14.16□□□□□ -0.14
USP3-216ENST00000559873 ANKARQ7Z5J8 1434 aa14.16□□□□□ -0.14
USP3-216ENST00000559873 EIF4G2P78344 907 aaKnown RBP eCLIP14.16□□□□□ -0.14
USP3-216ENST00000559873 EVC2Q86UK5 1308 aa14.15□□□□□ -0.14
USP3-216ENST00000559873 TULP4Q9NRJ4 1543 aa14.15□□□□□ -0.14
USP3-216ENST00000559873 WASLO00401 505 aaPredicted RBP14.15□□□□□ -0.14
USP3-216ENST00000559873 HIRIP3Q9BW71 556 aaPredicted RBP14.15□□□□□ -0.14
USP3-216ENST00000559873 SLAIN2Q9P270 581 aa14.15□□□□□ -0.14
USP3-216ENST00000559873 SCAF1Q9H7N4 1312 aaKnown RBP14.15□□□□□ -0.15
USP3-216ENST00000559873 FBXO41Q8TF61 875 aa14.14□□□□□ -0.15
USP3-216ENST00000559873 C1orf167Q5SNV9 1468 aa14.13□□□□□ -0.15
USP3-216ENST00000559873 ST20-MTHFSA0A0A6YYL1 179 aa14.13□□□□□ -0.15
USP3-216ENST00000559873 SRPK2P78362 688 aaKnown RBP14.13□□□□□ -0.15
USP3-216ENST00000559873 PIP4K2BP78356 416 aa14.12□□□□□ -0.15
USP3-216ENST00000559873 ITSN1Q15811 1721 aa14.12□□□□□ -0.15
USP3-216ENST00000559873 KIF1AQ12756 1690 aa14.11□□□□□ -0.15
USP3-216ENST00000559873 ROBO1Q9Y6N7 1651 aa14.11□□□□□ -0.15
USP3-216ENST00000559873 TMF1P82094 1093 aa14.11□□□□□ -0.15
USP3-216ENST00000559873 CDCA8Q53HL2 280 aa14.11□□□□□ -0.15
USP3-216ENST00000559873 CDK19Q9BWU1 502 aa14.11□□□□□ -0.15
USP3-216ENST00000559873 ATP7BP35670 1465 aa14.11□□□□□ -0.15
USP3-216ENST00000559873 ATAD2Q6PL18 1390 aa14.1□□□□□ -0.15
USP3-216ENST00000559873 NUTM2FA1L443 756 aa14.09□□□□□ -0.15
USP3-216ENST00000559873 TESK2Q96S53 571 aa14.09□□□□□ -0.15
USP3-216ENST00000559873 USP32Q8NFA0 1604 aa14.08□□□□□ -0.15
USP3-216ENST00000559873 HSPA5P11021 654 aaKnown RBP14.08□□□□□ -0.16
USP3-216ENST00000559873 ESCO1Q5FWF5 840 aa14.08□□□□□ -0.16
USP3-216ENST00000559873 TOPAZ1Q8N9V7 1692 aa14.07□□□□□ -0.16
USP3-216ENST00000559873 BRINP3Q76B58 766 aa14.07□□□□□ -0.16
USP3-216ENST00000559873 NUDT16Q96DE0 195 aaKnown RBP14.07□□□□□ -0.16
USP3-216ENST00000559873 PUS7Q96PZ0 661 aaKnown RBP14.07□□□□□ -0.16
USP3-216ENST00000559873 CABP2Q9NPB3 220 aa14.07□□□□□ -0.16
USP3-216ENST00000559873 CCDC61Q9Y6R9 512 aa14.07□□□□□ -0.16
USP3-216ENST00000559873 AHDC1Q5TGY3 1603 aaPredicted RBP14.07□□□□□ -0.16
USP3-216ENST00000559873 PHF8Q9UPP1 1060 aa14.06□□□□□ -0.16
USP3-216ENST00000559873 NPHP3Q7Z494 1330 aa14.06□□□□□ -0.16
USP3-216ENST00000559873 PRR36Q9H6K5 1346 aa14.06□□□□□ -0.16
USP3-216ENST00000559873 NINLQ9Y2I6 1382 aa14.06□□□□□ -0.16
USP3-216ENST00000559873 NHSL1Q5SYE7 1610 aa14.05□□□□□ -0.16
USP3-216ENST00000559873 ORAI2Q96SN7 254 aa14.05□□□□□ -0.16
USP3-216ENST00000559873 PPIP5K1Q6PFW1 1433 aa14.05□□□□□ -0.16
USP3-216ENST00000559873 DISP3Q9P2K9 1392 aa14.04□□□□□ -0.16
USP3-216ENST00000559873 NGDNQ8NEJ9 315 aaKnown RBP14.03□□□□□ -0.16
USP3-216ENST00000559873 RGPD8O14715 1765 aaPredicted RBP14.02□□□□□ -0.16
USP3-216ENST00000559873 PHLPP1O60346 1717 aa14.02□□□□□ -0.16
USP3-216ENST00000559873 PLEKHG3A1L390 1219 aa14.01□□□□□ -0.17
USP3-216ENST00000559873 PMFBP1Q8TBY8 1022 aa14.01□□□□□ -0.17
USP3-216ENST00000559873 POLR3AO14802 1390 aaPredicted RBP14□□□□□ -0.17
USP3-216ENST00000559873 PSME1Q06323 249 aa14□□□□□ -0.17
USP3-216ENST00000559873 TMC1Q8TDI8 760 aa14□□□□□ -0.17
USP3-216ENST00000559873 COL16A1Q07092 1604 aaPredicted RBP14□□□□□ -0.17
USP3-216ENST00000559873 BRD4O60885 1362 aaPredicted RBP13.99□□□□□ -0.17
USP3-216ENST00000559873 FOXO3O43524 673 aa13.99□□□□□ -0.17
USP3-216ENST00000559873 CABP1Q9NZU7 370 aa13.99□□□□□ -0.17
USP3-216ENST00000559873 PXDNQ92626 1479 aa13.99□□□□□ -0.17
USP3-216ENST00000559873 ACEP12821 1306 aa13.98□□□□□ -0.17
USP3-216ENST00000559873 SOS2Q07890 1332 aaPredicted RBP13.98□□□□□ -0.17
USP3-216ENST00000559873 HSPA1LP34931 641 aa13.98□□□□□ -0.17
USP3-216ENST00000559873 HDGFL2Q7Z4V5 671 aaPredicted RBP13.98□□□□□ -0.17
USP3-216ENST00000559873 TERF2IPQ9NYB0 399 aa13.98□□□□□ -0.17
USP3-216ENST00000559873 LRRC59Q96AG4 307 aaKnown RBP13.97□□□□□ -0.17
USP3-216ENST00000559873 POLR3GLQ9BT43 218 aa13.97□□□□□ -0.17
USP3-216ENST00000559873 ZNF692Q9BU19 519 aaPredicted RBP13.97□□□□□ -0.17
USP3-216ENST00000559873 SBNO1A3KN83 1393 aa13.96□□□□□ -0.17
USP3-216ENST00000559873 KRT28Q7Z3Y7 464 aa13.96□□□□□ -0.17
USP3-216ENST00000559873 USP6P35125 1406 aa13.96□□□□□ -0.18
USP3-216ENST00000559873 TNS3Q68CZ2 1445 aa13.96□□□□□ -0.18
USP3-216ENST00000559873 ARHGEF10O15013 1369 aa13.96□□□□□ -0.18
USP3-216ENST00000559873 ANKRD36BQ8N2N9 1353 aa13.96□□□□□ -0.18
USP3-216ENST00000559873 JCADQ9P266 1359 aa13.96□□□□□ -0.18
USP3-216ENST00000559873 KTN1Q86UP2 1357 aaKnown RBP13.95□□□□□ -0.18
USP3-216ENST00000559873 MYOM1P52179 1685 aa13.95□□□□□ -0.18
USP3-216ENST00000559873 AKAP12Q02952 1782 aa13.94□□□□□ -0.18
USP3-216ENST00000559873 XPCQ01831 940 aaPredicted RBP13.94□□□□□ -0.18
USP3-216ENST00000559873 CPSF1Q10570 1443 aaKnown RBP13.94□□□□□ -0.18
USP3-216ENST00000559873 ILDR1Q86SU0 546 aaPredicted RBP13.94□□□□□ -0.18
USP3-216ENST00000559873 DDX17Q92841 729 aaKnown RBP13.94□□□□□ -0.18
USP3-216ENST00000559873 A0A1W2PP64 1363 aa13.94□□□□□ -0.18
USP3-216ENST00000559873 KIF7Q2M1P5 1343 aa13.93□□□□□ -0.18
USP3-216ENST00000559873 MON2Q7Z3U7 1717 aa13.93□□□□□ -0.18
USP3-216ENST00000559873 SHPRHQ149N8 1683 aa13.93□□□□□ -0.18
USP3-216ENST00000559873 CCDC7Q96M83 1385 aa13.93□□□□□ -0.18
USP3-216ENST00000559873 TRPM3Q9HCF6 1732 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms