RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 RXRBP28702 533 aa19.69■□□□□ 0.74
TPM1-220ENST00000559556 SOS2Q07890 1332 aaPredicted RBP19.69■□□□□ 0.74
TPM1-220ENST00000559556 PXDNQ92626 1479 aa19.67■□□□□ 0.74
TPM1-220ENST00000559556 RGS12O14924 1447 aa19.67■□□□□ 0.74
TPM1-220ENST00000559556 ABCA3Q99758 1704 aa19.66■□□□□ 0.74
TPM1-220ENST00000559556 UPF1Q92900 1129 aaKnown RBP eCLIP19.66■□□□□ 0.74
TPM1-220ENST00000559556 PIK3C2GO75747 1445 aa19.66■□□□□ 0.74
TPM1-220ENST00000559556 FOXD1Q16676 465 aa19.65■□□□□ 0.74
TPM1-220ENST00000559556 ORAI2Q96SN7 254 aa19.65■□□□□ 0.74
TPM1-220ENST00000559556 ANKRD30BQ9BXX2 1392 aa19.65■□□□□ 0.74
TPM1-220ENST00000559556 C8orf37Q96NL8 207 aa19.64■□□□□ 0.73
TPM1-220ENST00000559556 MYOM2P54296 1465 aa19.63■□□□□ 0.73
TPM1-220ENST00000559556 ADGRF5Q8IZF2 1346 aa19.63■□□□□ 0.73
TPM1-220ENST00000559556 BRWD3Q6RI45 1802 aa19.62■□□□□ 0.73
TPM1-220ENST00000559556 SRCAPQ6ZRS2 3230 aa19.62■□□□□ 0.73
TPM1-220ENST00000559556 LRPPRCP42704 1394 aaKnown RBP19.61■□□□□ 0.73
TPM1-220ENST00000559556 RBM6P78332 1123 aaKnown RBP19.6■□□□□ 0.73
TPM1-220ENST00000559556 NRXN1Q9ULB1 1477 aa19.6■□□□□ 0.73
TPM1-220ENST00000559556 ABCC11Q96J66 1382 aa19.59■□□□□ 0.73
TPM1-220ENST00000559556 NPHP3Q7Z494 1330 aa19.59■□□□□ 0.73
TPM1-220ENST00000559556 MPHOSPH9Q99550 1183 aa19.59■□□□□ 0.73
TPM1-220ENST00000559556 QTRT2Q9H974 415 aaKnown RBP19.59■□□□□ 0.73
TPM1-220ENST00000559556 PLCH1Q4KWH8 1693 aa19.59■□□□□ 0.73
TPM1-220ENST00000559556 USP32Q8NFA0 1604 aa19.58■□□□□ 0.73
TPM1-220ENST00000559556 ADAMTS2O95450 1211 aa19.58■□□□□ 0.72
TPM1-220ENST00000559556 NWD2Q9ULI1 1742 aa19.58■□□□□ 0.72
TPM1-220ENST00000559556 YTHDC2Q9H6S0 1430 aaKnown RBP19.58■□□□□ 0.72
TPM1-220ENST00000559556 NGLY1Q96IV0 654 aa19.57■□□□□ 0.72
TPM1-220ENST00000559556 RGL3Q3MIN7 710 aa19.56■□□□□ 0.72
TPM1-220ENST00000559556 ATRNO75882 1429 aa19.56■□□□□ 0.72
TPM1-220ENST00000559556 ADGRB2O60241 1585 aa19.55■□□□□ 0.72
TPM1-220ENST00000559556 PLEKHH1Q9ULM0 1364 aa19.55■□□□□ 0.72
TPM1-220ENST00000559556 ACIN1Q9UKV3 1341 aaKnown RBP19.54■□□□□ 0.72
TPM1-220ENST00000559556 ESCO1Q5FWF5 840 aa19.54■□□□□ 0.72
TPM1-220ENST00000559556 WAPLQ7Z5K2 1190 aa19.53■□□□□ 0.72
TPM1-220ENST00000559556 FNBP4Q8N3X1 1017 aaPredicted RBP19.53■□□□□ 0.72
TPM1-220ENST00000559556 TRPM3Q9HCF6 1732 aaPredicted RBP19.53■□□□□ 0.72
TPM1-220ENST00000559556 DLC1Q96QB1 1528 aa19.52■□□□□ 0.72
TPM1-220ENST00000559556 STK26Q9P289 416 aa19.52■□□□□ 0.72
TPM1-220ENST00000559556 USP21Q9UK80 565 aa19.52■□□□□ 0.72
TPM1-220ENST00000559556 BCL9LQ86UU0 1499 aa19.52■□□□□ 0.72
TPM1-220ENST00000559556 ITSN1Q15811 1721 aa19.51■□□□□ 0.71
TPM1-220ENST00000559556 TMEM132EQ6IEE7 984 aa19.51■□□□□ 0.71
TPM1-220ENST00000559556 GLI3P10071 1580 aa19.5■□□□□ 0.71
TPM1-220ENST00000559556 TRPC5Q9UL62 973 aaPredicted RBP19.5■□□□□ 0.71
TPM1-220ENST00000559556 ARHGEF28Q8N1W1 1705 aaKnown RBP19.5■□□□□ 0.71
TPM1-220ENST00000559556 CRYBG1Q9Y4K1 1723 aa19.5■□□□□ 0.71
TPM1-220ENST00000559556 ALS2Q96Q42 1657 aa19.49■□□□□ 0.71
TPM1-220ENST00000559556 ATAD2Q6PL18 1390 aa19.49■□□□□ 0.71
TPM1-220ENST00000559556 FOXO3O43524 673 aa19.49■□□□□ 0.71
TPM1-220ENST00000559556 ADGRB1O14514 1584 aa19.48■□□□□ 0.71
TPM1-220ENST00000559556 NRAPQ86VF7 1730 aa19.48■□□□□ 0.71
TPM1-220ENST00000559556 NUTM2FA1L443 756 aa19.47■□□□□ 0.71
TPM1-220ENST00000559556 XPCQ01831 940 aaPredicted RBP19.47■□□□□ 0.71
TPM1-220ENST00000559556 SIRT1Q96EB6 747 aa19.47■□□□□ 0.71
TPM1-220ENST00000559556 SLIT2O94813 1529 aa19.46■□□□□ 0.71
TPM1-220ENST00000559556 C14orf93Q9H972 538 aaKnown RBP19.46■□□□□ 0.71
TPM1-220ENST00000559556 TNS3Q68CZ2 1445 aa19.45■□□□□ 0.7
TPM1-220ENST00000559556 SPATA31A3Q5VYP0 1347 aa19.45■□□□□ 0.7
TPM1-220ENST00000559556 DHX57Q6P158 1386 aaKnown RBP19.44■□□□□ 0.7
TPM1-220ENST00000559556 RAB3GAP2Q9H2M9 1393 aa19.44■□□□□ 0.7
TPM1-220ENST00000559556 ANKARQ7Z5J8 1434 aa19.42■□□□□ 0.7
TPM1-220ENST00000559556 CFAP70Q5T0N1 1121 aa19.41■□□□□ 0.7
TPM1-220ENST00000559556 KIAA1210Q9ULL0 1709 aa19.41■□□□□ 0.7
TPM1-220ENST00000559556 RALGAPBQ86X10 1494 aa19.41■□□□□ 0.7
TPM1-220ENST00000559556 COL14A1Q05707 1796 aaKnown RBP19.4■□□□□ 0.7
TPM1-220ENST00000559556 SBNO1A3KN83 1393 aa19.38■□□□□ 0.69
TPM1-220ENST00000559556 KRT28Q7Z3Y7 464 aa19.38■□□□□ 0.69
TPM1-220ENST00000559556 TOPAZ1Q8N9V7 1692 aa19.38■□□□□ 0.69
TPM1-220ENST00000559556 TULP4Q9NRJ4 1543 aa19.38■□□□□ 0.69
TPM1-220ENST00000559556 PHF8Q9UPP1 1060 aa19.38■□□□□ 0.69
TPM1-220ENST00000559556 GJD4Q96KN9 370 aaPredicted RBP19.37■□□□□ 0.69
TPM1-220ENST00000559556 PRAM1Q96QH2 718 aa19.36■□□□□ 0.69
TPM1-220ENST00000559556 PHRF1Q9P1Y6 1649 aaKnown RBP19.36■□□□□ 0.69
TPM1-220ENST00000559556 ARHGEF10O15013 1369 aa19.35■□□□□ 0.69
TPM1-220ENST00000559556 UNC5CLQ8IV45 518 aa19.35■□□□□ 0.69
TPM1-220ENST00000559556 PSME1Q06323 249 aa19.33■□□□□ 0.68
TPM1-220ENST00000559556 SAFB2Q14151 953 aaKnown RBP eCLIP19.33■□□□□ 0.68
TPM1-220ENST00000559556 RGPD1P0DJD0 1748 aa19.33■□□□□ 0.68
TPM1-220ENST00000559556 EIF3AQ14152 1382 aaKnown RBP19.32■□□□□ 0.68
TPM1-220ENST00000559556 CCDC125Q86Z20 511 aa19.3■□□□□ 0.68
TPM1-220ENST00000559556 POGKQ9P215 609 aa19.3■□□□□ 0.68
TPM1-220ENST00000559556 TNS1Q9HBL0 1735 aaKnown RBP19.28■□□□□ 0.68
TPM1-220ENST00000559556 BLMP54132 1417 aaPredicted RBP19.28■□□□□ 0.68
TPM1-220ENST00000559556 THSD7AQ9UPZ6 1657 aa19.28■□□□□ 0.68
TPM1-220ENST00000559556 HAP1P54257 671 aaPredicted RBP19.28■□□□□ 0.68
TPM1-220ENST00000559556 CABLES1Q8TDN4 633 aa19.28■□□□□ 0.68
TPM1-220ENST00000559556 ATP7BP35670 1465 aa19.28■□□□□ 0.68
TPM1-220ENST00000559556 VPS72Q15906 364 aa19.27■□□□□ 0.68
TPM1-220ENST00000559556 PMFBP1Q8TBY8 1022 aa19.26■□□□□ 0.67
TPM1-220ENST00000559556 STAC3Q96MF2 364 aa19.26■□□□□ 0.67
TPM1-220ENST00000559556 TRAK1Q9UPV9 953 aa19.26■□□□□ 0.67
TPM1-220ENST00000559556 PRR36Q9H6K5 1346 aa19.25■□□□□ 0.67
TPM1-220ENST00000559556 DCAF11Q8TEB1 546 aa19.25■□□□□ 0.67
TPM1-220ENST00000559556 MINK1Q8N4C8 1332 aaPredicted RBP19.25■□□□□ 0.67
TPM1-220ENST00000559556 QRICH2Q9H0J4 1663 aa19.24■□□□□ 0.67
TPM1-220ENST00000559556 GPRASP1Q5JY77 1395 aa19.24■□□□□ 0.67
TPM1-220ENST00000559556 LMOD2Q6P5Q4 547 aa19.24■□□□□ 0.67
TPM1-220ENST00000559556 HIRIP3Q9BW71 556 aaPredicted RBP19.24■□□□□ 0.67
TPM1-220ENST00000559556 LRP5O75197 1615 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms