RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 FMN2Q9NZ56 1722 aa16.5■□□□□ 0.23
SNX1-204ENST00000559061 SIRT1Q96EB6 747 aa16.49■□□□□ 0.23
SNX1-204ENST00000559061 TRAK1Q9UPV9 953 aa16.48■□□□□ 0.23
SNX1-204ENST00000559061 USP32Q8NFA0 1604 aa16.48■□□□□ 0.23
SNX1-204ENST00000559061 PRAM1Q96QH2 718 aa16.47■□□□□ 0.23
SNX1-204ENST00000559061 C19orf44Q9H6X5 657 aa16.47■□□□□ 0.23
SNX1-204ENST00000559061 QRICH2Q9H0J4 1663 aa16.46■□□□□ 0.23
SNX1-204ENST00000559061 RGPD8O14715 1765 aaPredicted RBP16.46■□□□□ 0.22
SNX1-204ENST00000559061 ROCK2O75116 1388 aaKnown RBP16.44■□□□□ 0.22
SNX1-204ENST00000559061 TOM1O60784 492 aa16.44■□□□□ 0.22
SNX1-204ENST00000559061 C1orf167Q5SNV9 1468 aa16.43■□□□□ 0.22
SNX1-204ENST00000559061 NHSL1Q5SYE7 1610 aa16.42■□□□□ 0.22
SNX1-204ENST00000559061 PIP4K2BP78356 416 aa16.42■□□□□ 0.22
SNX1-204ENST00000559061 SAFB2Q14151 953 aaKnown RBP eCLIP16.42■□□□□ 0.22
SNX1-204ENST00000559061 C14orf37Q86TY3 774 aa16.42■□□□□ 0.22
SNX1-204ENST00000559061 TULP4Q9NRJ4 1543 aa16.41■□□□□ 0.22
SNX1-204ENST00000559061 SLAIN2Q9P270 581 aa16.41■□□□□ 0.22
SNX1-204ENST00000559061 TIMELESSQ9UNS1 1208 aa16.41■□□□□ 0.22
SNX1-204ENST00000559061 CADPS2Q86UW7 1296 aa16.4■□□□□ 0.22
SNX1-204ENST00000559061 COL16A1Q07092 1604 aaPredicted RBP16.4■□□□□ 0.22
SNX1-204ENST00000559061 AHDC1Q5TGY3 1603 aaPredicted RBP16.4■□□□□ 0.22
SNX1-204ENST00000559061 TOPAZ1Q8N9V7 1692 aa16.39■□□□□ 0.21
SNX1-204ENST00000559061 ATF3P18847 181 aa16.38■□□□□ 0.21
SNX1-204ENST00000559061 BRINP3Q76B58 766 aa16.38■□□□□ 0.21
SNX1-204ENST00000559061 MINK1Q8N4C8 1332 aaPredicted RBP16.38■□□□□ 0.21
SNX1-204ENST00000559061 PHLPP1O60346 1717 aa16.37■□□□□ 0.21
SNX1-204ENST00000559061 HSPA1LP34931 641 aa16.37■□□□□ 0.21
SNX1-204ENST00000559061 HIRIP3Q9BW71 556 aaPredicted RBP16.37■□□□□ 0.21
SNX1-204ENST00000559061 PRR36Q9H6K5 1346 aa16.37■□□□□ 0.21
SNX1-204ENST00000559061 ATP7BP35670 1465 aa16.36■□□□□ 0.21
SNX1-204ENST00000559061 POGKQ9P215 609 aa16.36■□□□□ 0.21
SNX1-204ENST00000559061 ORAI2Q96SN7 254 aa16.35■□□□□ 0.21
SNX1-204ENST00000559061 SCAF1Q9H7N4 1312 aaKnown RBP16.35■□□□□ 0.21
SNX1-204ENST00000559061 CENPJQ9HC77 1338 aaPredicted RBP16.35■□□□□ 0.21
SNX1-204ENST00000559061 CARD11Q9BXL7 1154 aa16.34■□□□□ 0.21
SNX1-204ENST00000559061 KIF1AQ12756 1690 aa16.34■□□□□ 0.21
SNX1-204ENST00000559061 NUTM2FA1L443 756 aa16.33■□□□□ 0.2
SNX1-204ENST00000559061 DDX17Q92841 729 aaKnown RBP16.33■□□□□ 0.2
SNX1-204ENST00000559061 ANKARQ7Z5J8 1434 aa16.33■□□□□ 0.2
SNX1-204ENST00000559061 WASLO00401 505 aaPredicted RBP16.32■□□□□ 0.2
SNX1-204ENST00000559061 ITSN1Q15811 1721 aa16.31■□□□□ 0.2
SNX1-204ENST00000559061 PXDNQ92626 1479 aa16.31■□□□□ 0.2
SNX1-204ENST00000559061 SBNO2Q9Y2G9 1366 aa16.31■□□□□ 0.2
SNX1-204ENST00000559061 EIF3AQ14152 1382 aaKnown RBP16.29■□□□□ 0.2
SNX1-204ENST00000559061 USP47Q96K76 1375 aa16.29■□□□□ 0.2
SNX1-204ENST00000559061 TRPM3Q9HCF6 1732 aaPredicted RBP16.29■□□□□ 0.2
SNX1-204ENST00000559061 TESK2Q96S53 571 aa16.29■□□□□ 0.2
SNX1-204ENST00000559061 SHPRHQ149N8 1683 aa16.27■□□□□ 0.2
SNX1-204ENST00000559061 CDK19Q9BWU1 502 aa16.27■□□□□ 0.2
SNX1-204ENST00000559061 SOS2Q07890 1332 aaPredicted RBP16.25■□□□□ 0.19
SNX1-204ENST00000559061 ST20-MTHFSA0A0A6YYL1 179 aa16.25■□□□□ 0.19
SNX1-204ENST00000559061 ESCO1Q5FWF5 840 aa16.25■□□□□ 0.19
SNX1-204ENST00000559061 NUDT16Q96DE0 195 aaKnown RBP16.24■□□□□ 0.19
SNX1-204ENST00000559061 CABP2Q9NPB3 220 aa16.24■□□□□ 0.19
SNX1-204ENST00000559061 ALS2Q96Q42 1657 aa16.23■□□□□ 0.19
SNX1-204ENST00000559061 DISP3Q9P2K9 1392 aa16.23■□□□□ 0.19
SNX1-204ENST00000559061 AKAP12Q02952 1782 aa16.23■□□□□ 0.19
SNX1-204ENST00000559061 COL22A1Q8NFW1 1626 aaPredicted RBP16.23■□□□□ 0.19
SNX1-204ENST00000559061 PHF8Q9UPP1 1060 aa16.22■□□□□ 0.19
SNX1-204ENST00000559061 MYOM1P52179 1685 aa16.21■□□□□ 0.19
SNX1-204ENST00000559061 LRP6O75581 1613 aa16.21■□□□□ 0.19
SNX1-204ENST00000559061 FOXO3O43524 673 aa16.21■□□□□ 0.19
SNX1-204ENST00000559061 XPCQ01831 940 aaPredicted RBP16.21■□□□□ 0.19
SNX1-204ENST00000559061 PMFBP1Q8TBY8 1022 aa16.21■□□□□ 0.19
SNX1-204ENST00000559061 POLR3AO14802 1390 aaPredicted RBP16.21■□□□□ 0.19
SNX1-204ENST00000559061 CD163L1Q9NR16 1453 aa16.21■□□□□ 0.19
SNX1-204ENST00000559061 MED1Q15648 1581 aaPredicted RBP16.21■□□□□ 0.18
SNX1-204ENST00000559061 NRKQ7Z2Y5 1582 aa16.21■□□□□ 0.18
SNX1-204ENST00000559061 PPIP5K1Q6PFW1 1433 aa16.2■□□□□ 0.18
SNX1-204ENST00000559061 ABCA3Q99758 1704 aa16.2■□□□□ 0.18
SNX1-204ENST00000559061 CRYBG1Q9Y4K1 1723 aa16.2■□□□□ 0.18
SNX1-204ENST00000559061 PNPLA6Q8IY17 1366 aa16.2■□□□□ 0.18
SNX1-204ENST00000559061 EVC2Q86UK5 1308 aa16.19■□□□□ 0.18
SNX1-204ENST00000559061 NPHP3Q7Z494 1330 aa16.19■□□□□ 0.18
SNX1-204ENST00000559061 PLEKHG3A1L390 1219 aa16.18■□□□□ 0.18
SNX1-204ENST00000559061 SRPK2P78362 688 aaKnown RBP16.18■□□□□ 0.18
SNX1-204ENST00000559061 MON2Q7Z3U7 1717 aa16.18■□□□□ 0.18
SNX1-204ENST00000559061 MARF1Q9Y4F3 1742 aaKnown RBP16.17■□□□□ 0.18
SNX1-204ENST00000559061 JCADQ9P266 1359 aa16.17■□□□□ 0.18
SNX1-204ENST00000559061 CCDC61Q9Y6R9 512 aa16.17■□□□□ 0.18
SNX1-204ENST00000559061 HSPA5P11021 654 aaKnown RBP16.16■□□□□ 0.18
SNX1-204ENST00000559061 SSH2Q76I76 1423 aa16.16■□□□□ 0.18
SNX1-204ENST00000559061 CPSF1Q10570 1443 aaKnown RBP16.15■□□□□ 0.18
SNX1-204ENST00000559061 TNS3Q68CZ2 1445 aa16.15■□□□□ 0.18
SNX1-204ENST00000559061 ACEP12821 1306 aa16.15■□□□□ 0.18
SNX1-204ENST00000559061 SPATA31A3Q5VYP0 1347 aa16.15■□□□□ 0.18
SNX1-204ENST00000559061 SBNO1A3KN83 1393 aa16.14■□□□□ 0.17
SNX1-204ENST00000559061 ATAD2Q6PL18 1390 aa16.14■□□□□ 0.17
SNX1-204ENST00000559061 KRT28Q7Z3Y7 464 aa16.14■□□□□ 0.17
SNX1-204ENST00000559061 CABP1Q9NZU7 370 aa16.14■□□□□ 0.17
SNX1-204ENST00000559061 PIK3C2AO00443 1686 aa16.14■□□□□ 0.17
SNX1-204ENST00000559061 USP6P35125 1406 aa16.12■□□□□ 0.17
SNX1-204ENST00000559061 C11orf95C9JLR9 678 aaPredicted RBP16.11■□□□□ 0.17
SNX1-204ENST00000559061 EIF4G2P78344 907 aaKnown RBP eCLIP16.11■□□□□ 0.17
SNX1-204ENST00000559061 LRRC59Q96AG4 307 aaKnown RBP16.11■□□□□ 0.17
SNX1-204ENST00000559061 PUS7Q96PZ0 661 aaKnown RBP16.11■□□□□ 0.17
SNX1-204ENST00000559061 PHRF1Q9P1Y6 1649 aaKnown RBP16.11■□□□□ 0.17
SNX1-204ENST00000559061 USP54Q70EL1 1684 aa16.09■□□□□ 0.17
SNX1-204ENST00000559061 NGDNQ8NEJ9 315 aaKnown RBP16.09■□□□□ 0.17
SNX1-204ENST00000559061 SLC12A5Q9H2X9 1139 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms