RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 DMRT2Q9Y5R5 561 aa14.02□□□□□ -0.16
CUX1-217ENST00000558836 PREX1Q8TCU6 1659 aa14.02□□□□□ -0.16
CUX1-217ENST00000558836 RRP7AQ9Y3A4 280 aaKnown RBP14.02□□□□□ -0.17
CUX1-217ENST00000558836 ZMYM4Q5VZL5 1548 aa14.02□□□□□ -0.17
CUX1-217ENST00000558836 MTHFSP49914 203 aa14.01□□□□□ -0.17
CUX1-217ENST00000558836 GOLGA2Q08379 1002 aa14.01□□□□□ -0.17
CUX1-217ENST00000558836 DUSP27Q5VZP5 1158 aa14.01□□□□□ -0.17
CUX1-217ENST00000558836 PLPPR3Q6T4P5 718 aa14.01□□□□□ -0.17
CUX1-217ENST00000558836 WAPLQ7Z5K2 1190 aa14.01□□□□□ -0.17
CUX1-217ENST00000558836 GGNBP2Q9H3C7 697 aa14□□□□□ -0.17
CUX1-217ENST00000558836 TULP4Q9NRJ4 1543 aa14□□□□□ -0.17
CUX1-217ENST00000558836 TMEM131LA2VDJ0 1609 aa14□□□□□ -0.17
CUX1-217ENST00000558836 CRBNQ96SW2 442 aa13.99□□□□□ -0.17
CUX1-217ENST00000558836 CGNL1Q0VF96 1302 aa13.99□□□□□ -0.17
CUX1-217ENST00000558836 ZC3H13Q5T200 1668 aaKnown RBP13.99□□□□□ -0.17
CUX1-217ENST00000558836 ZNF521Q96K83 1311 aa13.99□□□□□ -0.17
CUX1-217ENST00000558836 BCL11AQ9H165 835 aa13.99□□□□□ -0.17
CUX1-217ENST00000558836 ESF1Q9H501 851 aaKnown RBP13.98□□□□□ -0.17
CUX1-217ENST00000558836 ARHGEF28Q8N1W1 1705 aaKnown RBP13.98□□□□□ -0.17
CUX1-217ENST00000558836 INSRP06213 1382 aa13.98□□□□□ -0.17
CUX1-217ENST00000558836 SKAP1Q86WV1 359 aa13.98□□□□□ -0.17
CUX1-217ENST00000558836 CLTCQ00610 1675 aaKnown RBP13.97□□□□□ -0.17
CUX1-217ENST00000558836 SLFN5Q08AF3 891 aa13.97□□□□□ -0.17
CUX1-217ENST00000558836 YTHDC2Q9H6S0 1430 aaKnown RBP13.96□□□□□ -0.17
CUX1-217ENST00000558836 MSH5O43196 834 aa13.96□□□□□ -0.17
CUX1-217ENST00000558836 CDK19Q9BWU1 502 aa13.96□□□□□ -0.17
CUX1-217ENST00000558836 A0A1W2PP64 1363 aa13.96□□□□□ -0.18
CUX1-217ENST00000558836 FBLN1P23142 703 aa13.95□□□□□ -0.18
CUX1-217ENST00000558836 CABP1Q9NZU7 370 aa13.95□□□□□ -0.18
CUX1-217ENST00000558836 ZFYVE9O95405 1425 aa13.95□□□□□ -0.18
CUX1-217ENST00000558836 ANKRD36BQ8N2N9 1353 aa13.94□□□□□ -0.18
CUX1-217ENST00000558836 BCAR3O75815 825 aa13.94□□□□□ -0.18
CUX1-217ENST00000558836 POLR3AO14802 1390 aaPredicted RBP13.94□□□□□ -0.18
CUX1-217ENST00000558836 PTPRMP28827 1452 aa13.93□□□□□ -0.18
CUX1-217ENST00000558836 U2AF1L5P0DN76 240 aaPredicted RBP13.93□□□□□ -0.18
CUX1-217ENST00000558836 U2AF1Q01081 240 aaKnown RBP eCLIP13.93□□□□□ -0.185e-6■□□□□ 11.2
CUX1-217ENST00000558836 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.93□□□□□ -0.18
CUX1-217ENST00000558836 TCP11L2Q8N4U5 519 aa13.93□□□□□ -0.18
CUX1-217ENST00000558836 WWC1Q8IX03 1113 aa13.92□□□□□ -0.18
CUX1-217ENST00000558836 ZMYM3Q14202 1370 aa13.92□□□□□ -0.18
CUX1-217ENST00000558836 TXNDC2Q86VQ3 553 aa13.92□□□□□ -0.18
CUX1-217ENST00000558836 ALKQ9UM73 1620 aa13.92□□□□□ -0.18
CUX1-217ENST00000558836 CEBPAP49715 358 aaPredicted RBP13.92□□□□□ -0.18
CUX1-217ENST00000558836 DAXXQ9UER7 740 aaPredicted RBP13.92□□□□□ -0.18
CUX1-217ENST00000558836 A2ML1A8K2U0 1454 aa13.91□□□□□ -0.18
CUX1-217ENST00000558836 RIMS2Q9UQ26 1411 aa13.91□□□□□ -0.18
CUX1-217ENST00000558836 U2SURPO15042 1029 aaKnown RBP13.91□□□□□ -0.18
CUX1-217ENST00000558836 FYB1O15117 783 aa13.91□□□□□ -0.18
CUX1-217ENST00000558836 NCKAP5LQ9HCH0 1330 aa13.91□□□□□ -0.18
CUX1-217ENST00000558836 CFAP53Q96M91 514 aa13.9□□□□□ -0.18
CUX1-217ENST00000558836 KIF13AQ9H1H9 1805 aa13.9□□□□□ -0.18
CUX1-217ENST00000558836 PPM1GO15355 546 aaPredicted RBP13.9□□□□□ -0.18
CUX1-217ENST00000558836 TRMT2AQ8IZ69 625 aaKnown RBP13.9□□□□□ -0.18
CUX1-217ENST00000558836 PPP6R1Q9UPN7 881 aa13.9□□□□□ -0.18
CUX1-217ENST00000558836 RUNDC1Q96C34 613 aa13.89□□□□□ -0.19
CUX1-217ENST00000558836 TERF2IPQ9NYB0 399 aa13.89□□□□□ -0.19
CUX1-217ENST00000558836 PUS7Q96PZ0 661 aaKnown RBP13.89□□□□□ -0.19
CUX1-217ENST00000558836 E9PSI1 815 aa13.89□□□□□ -0.19
CUX1-217ENST00000558836 AGLP35573 1532 aa13.88□□□□□ -0.19
CUX1-217ENST00000558836 METP08581 1390 aa13.88□□□□□ -0.19
CUX1-217ENST00000558836 NUTM2FA1L443 756 aa13.87□□□□□ -0.19
CUX1-217ENST00000558836 HDGFL2Q7Z4V5 671 aaPredicted RBP13.87□□□□□ -0.19
CUX1-217ENST00000558836 ATAD2Q6PL18 1390 aa13.87□□□□□ -0.19
CUX1-217ENST00000558836 ABCC11Q96J66 1382 aa13.87□□□□□ -0.19
CUX1-217ENST00000558836 BCL2L13Q9BXK5 485 aa13.86□□□□□ -0.19
CUX1-217ENST00000558836 SHPRHQ149N8 1683 aa13.86□□□□□ -0.19
CUX1-217ENST00000558836 FANCIQ9NVI1 1328 aa13.86□□□□□ -0.19
CUX1-217ENST00000558836 NKTRP30414 1462 aaKnown RBP13.86□□□□□ -0.19
CUX1-217ENST00000558836 CD163L1Q9NR16 1453 aa13.86□□□□□ -0.19
CUX1-217ENST00000558836 FRAT1Q92837 279 aaPredicted RBP13.85□□□□□ -0.19
CUX1-217ENST00000558836 SPATA31D1Q6ZQQ2 1576 aa13.85□□□□□ -0.19
CUX1-217ENST00000558836 ANP32EQ9BTT0 268 aa13.85□□□□□ -0.19
CUX1-217ENST00000558836 ZRANB1Q9UGI0 708 aa13.85□□□□□ -0.19
CUX1-217ENST00000558836 REREQ9P2R6 1566 aa13.84□□□□□ -0.19
CUX1-217ENST00000558836 ARHGEF40Q8TER5 1519 aa13.83□□□□□ -0.19
CUX1-217ENST00000558836 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.83□□□□□ -0.2
CUX1-217ENST00000558836 CANXP27824 592 aaKnown RBP13.83□□□□□ -0.2
CUX1-217ENST00000558836 NPM2Q86SE8 214 aaKnown RBP13.83□□□□□ -0.2
CUX1-217ENST00000558836 NSD2O96028 1365 aa13.82□□□□□ -0.2
CUX1-217ENST00000558836 PANK1Q8TE04 598 aa13.82□□□□□ -0.2
CUX1-217ENST00000558836 SLC26A8Q96RN1 970 aa13.82□□□□□ -0.2
CUX1-217ENST00000558836 TNRQ92752 1358 aa13.81□□□□□ -0.2
CUX1-217ENST00000558836 WASLO00401 505 aaPredicted RBP13.81□□□□□ -0.2
CUX1-217ENST00000558836 TSR2Q969E8 191 aaKnown RBP13.81□□□□□ -0.2
CUX1-217ENST00000558836 TNNQ9UQP3 1299 aa13.81□□□□□ -0.2
CUX1-217ENST00000558836 LTKP29376 864 aa13.81□□□□□ -0.2
CUX1-217ENST00000558836 NME9Q86XW9 330 aa13.81□□□□□ -0.2
CUX1-217ENST00000558836 USP32Q8NFA0 1604 aa13.81□□□□□ -0.2
CUX1-217ENST00000558836 NINLQ9Y2I6 1382 aa13.81□□□□□ -0.2
CUX1-217ENST00000558836 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.8□□□□□ -0.2
CUX1-217ENST00000558836 COG6Q9Y2V7 657 aa13.8□□□□□ -0.2
CUX1-217ENST00000558836 TRHP20396 242 aaPredicted RBP13.8□□□□□ -0.2
CUX1-217ENST00000558836 NUDT16Q96DE0 195 aaKnown RBP13.8□□□□□ -0.2
CUX1-217ENST00000558836 CLUAP1Q96AJ1 413 aa13.79□□□□□ -0.2
CUX1-217ENST00000558836 DIAPH1O60610 1272 aaKnown RBP13.79□□□□□ -0.2
CUX1-217ENST00000558836 NLRP1Q9C000 1473 aa13.78□□□□□ -0.2
CUX1-217ENST00000558836 PLEKHF1Q96S99 279 aa13.78□□□□□ -0.2
CUX1-217ENST00000558836 PHF23Q9BUL5 403 aaPredicted RBP13.78□□□□□ -0.2
CUX1-217ENST00000558836 EMILIN1Q9Y6C2 1016 aa13.78□□□□□ -0.2
CUX1-217ENST00000558836 HMOX1P09601 288 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms