RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 NCOA1Q15788 1441 aa7.49□□□□□ -1.21
LDLR-209ENST00000558528 NCOA2Q15596 1464 aa7.49□□□□□ -1.21
LDLR-209ENST00000558528 ABCA9Q8IUA7 1624 aa7.49□□□□□ -1.21
LDLR-209ENST00000558528 FECHP22830 423 aa7.48□□□□□ -1.21
LDLR-209ENST00000558528 ZEB1P37275 1124 aaPredicted RBP7.48□□□□□ -1.21
LDLR-209ENST00000558528 MYOM3Q5VTT5 1437 aa7.48□□□□□ -1.21
LDLR-209ENST00000558528 AKNAQ7Z591 1439 aa7.48□□□□□ -1.21
LDLR-209ENST00000558528 ZNF330Q9Y3S2 320 aaPredicted RBP7.48□□□□□ -1.21
LDLR-209ENST00000558528 TBC1D12O60347 775 aa7.47□□□□□ -1.21
LDLR-209ENST00000558528 DIXDC1Q155Q3 683 aa7.47□□□□□ -1.21
LDLR-209ENST00000558528 POM121Q96HA1 1249 aa7.47□□□□□ -1.21
LDLR-209ENST00000558528 GZF1Q9H116 711 aaPredicted RBP7.47□□□□□ -1.21
LDLR-209ENST00000558528 PRM3Q9NNZ6 103 aa7.47□□□□□ -1.21
LDLR-209ENST00000558528 COG6Q9Y2V7 657 aa7.47□□□□□ -1.21
LDLR-209ENST00000558528 ZMYM4Q5VZL5 1548 aa7.47□□□□□ -1.21
LDLR-209ENST00000558528 RICTORQ6R327 1708 aa7.47□□□□□ -1.21
LDLR-209ENST00000558528 FGD6Q6ZV73 1430 aa7.46□□□□□ -1.21
LDLR-209ENST00000558528 CEBPAP49715 358 aaPredicted RBP7.46□□□□□ -1.22
LDLR-209ENST00000558528 MICALL2Q8IY33 904 aa7.46□□□□□ -1.22
LDLR-209ENST00000558528 FBXW7Q969H0 707 aa7.46□□□□□ -1.22
LDLR-209ENST00000558528 MTMR7Q9Y216 660 aa7.46□□□□□ -1.22
LDLR-209ENST00000558528 CDK13Q14004 1512 aaKnown RBP7.46□□□□□ -1.22
LDLR-209ENST00000558528 ZNF335Q9H4Z2 1342 aaPredicted RBP7.46□□□□□ -1.22
LDLR-209ENST00000558528 SUPT6HQ7KZ85 1726 aaKnown RBP7.45□□□□□ -1.22
LDLR-209ENST00000558528 TSPY4P0CV99 314 aa7.45□□□□□ -1.22
LDLR-209ENST00000558528 TSPY10P0CW01 314 aa7.45□□□□□ -1.22
LDLR-209ENST00000558528 SSTR3P32745 418 aaPredicted RBP7.45□□□□□ -1.22
LDLR-209ENST00000558528 KCNA1Q09470 495 aa7.45□□□□□ -1.22
LDLR-209ENST00000558528 TMEM259Q4ZIN3 620 aa7.45□□□□□ -1.22
LDLR-209ENST00000558528 EFCAB2Q5VUJ9 269 aa7.45□□□□□ -1.22
LDLR-209ENST00000558528 TIE1P35590 1138 aa7.44□□□□□ -1.22
LDLR-209ENST00000558528 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.44□□□□□ -1.22
LDLR-209ENST00000558528 REPIN1Q9BWE0 567 aaKnown RBP7.44□□□□□ -1.22
LDLR-209ENST00000558528 ZRANB1Q9UGI0 708 aa7.44□□□□□ -1.22
LDLR-209ENST00000558528 DENND4BO75064 1496 aaPredicted RBP7.43□□□□□ -1.22
LDLR-209ENST00000558528 ZFYVE16Q7Z3T8 1539 aa7.43□□□□□ -1.22
LDLR-209ENST00000558528 ITGAEP38570 1179 aa7.43□□□□□ -1.22
LDLR-209ENST00000558528 FXR2P51116 673 aaKnown RBP eCLIP7.43□□□□□ -1.22
LDLR-209ENST00000558528 MLECQ14165 292 aa7.43□□□□□ -1.22
LDLR-209ENST00000558528 BEGAINQ9BUH8 593 aa7.43□□□□□ -1.22
LDLR-209ENST00000558528 USTQ9Y2C2 406 aa7.43□□□□□ -1.22
LDLR-209ENST00000558528 MAGI2Q86UL8 1455 aa7.43□□□□□ -1.22
LDLR-209ENST00000558528 CLK2P49760 499 aaKnown RBP7.42□□□□□ -1.22
LDLR-209ENST00000558528 MDM2Q00987 491 aaPredicted RBP7.42□□□□□ -1.22
LDLR-209ENST00000558528 IRF5Q13568 498 aa7.42□□□□□ -1.22
LDLR-209ENST00000558528 DDX12PQ92771 950 aa7.42□□□□□ -1.22
LDLR-209ENST00000558528 TCOF1Q13428 1488 aaKnown RBP7.42□□□□□ -1.22
LDLR-209ENST00000558528 PLEKHH2Q8IVE3 1493 aa7.42□□□□□ -1.22
LDLR-209ENST00000558528 GPATCH8Q9UKJ3 1502 aaKnown RBP7.42□□□□□ -1.22
LDLR-209ENST00000558528 E9PSI1 815 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 G3V3G9 751 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 KIF3CO14782 793 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 TOM1O60784 492 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 BRD1O95696 1058 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 PIP4K2BP78356 416 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 POTEAQ6S8J7 498 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 CCER1Q8TC90 406 aaPredicted RBP7.41□□□□□ -1.22
LDLR-209ENST00000558528 CLSPNQ9HAW4 1339 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 PLCH2O75038 1416 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 KIF14Q15058 1648 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 ALKQ9UM73 1620 aa7.41□□□□□ -1.22
LDLR-209ENST00000558528 C2orf72A6NCS6 295 aa7.4□□□□□ -1.22
LDLR-209ENST00000558528 RFC5P40937 340 aa7.4□□□□□ -1.22
LDLR-209ENST00000558528 RBM25P49756 843 aaKnown RBP7.4□□□□□ -1.22
LDLR-209ENST00000558528 MYSM1Q5VVJ2 828 aa7.4□□□□□ -1.22
LDLR-209ENST00000558528 PROCA1Q8NCQ7 364 aaPredicted RBP7.4□□□□□ -1.22
LDLR-209ENST00000558528 CALR3Q96L12 384 aaKnown RBP7.4□□□□□ -1.22
LDLR-209ENST00000558528 FAM217BQ9NTX9 383 aaPredicted RBP7.4□□□□□ -1.22
LDLR-209ENST00000558528 AMOTL2Q9Y2J4 779 aa7.4□□□□□ -1.22
LDLR-209ENST00000558528 SETD5Q9C0A6 1442 aa7.4□□□□□ -1.22
LDLR-209ENST00000558528 KIAA1107Q9UPP5 1409 aa7.4□□□□□ -1.22
LDLR-209ENST00000558528 CAMSAP1Q5T5Y3 1602 aa7.4□□□□□ -1.22
LDLR-209ENST00000558528 SETD1AO15047 1707 aaKnown RBP7.39□□□□□ -1.23
LDLR-209ENST00000558528 ROCK1Q13464 1354 aa7.39□□□□□ -1.23
LDLR-209ENST00000558528 OATP04181 439 aa7.39□□□□□ -1.23
LDLR-209ENST00000558528 POTEDQ86YR6 584 aa7.39□□□□□ -1.23
LDLR-209ENST00000558528 C3P01024 1663 aa7.38□□□□□ -1.23
LDLR-209ENST00000558528 TRAPPC8Q9Y2L5 1435 aa7.38□□□□□ -1.23
LDLR-209ENST00000558528 PPP2R2DQ66LE6 453 aa7.38□□□□□ -1.23
LDLR-209ENST00000558528 UPF1Q92900 1129 aaKnown RBP eCLIP7.38□□□□□ -1.23
LDLR-209ENST00000558528 PHF12Q96QT6 1004 aa7.38□□□□□ -1.23
LDLR-209ENST00000558528 EPAS1Q99814 870 aa7.38□□□□□ -1.23
LDLR-209ENST00000558528 TMEM121BQ9BXQ6 578 aaPredicted RBP7.38□□□□□ -1.23
LDLR-209ENST00000558528 POLR3EQ9NVU0 708 aa7.38□□□□□ -1.23
LDLR-209ENST00000558528 ANKRD30AQ9BXX3 1397 aa7.37□□□□□ -1.23
LDLR-209ENST00000558528 EVI5O60447 810 aa7.37□□□□□ -1.23
LDLR-209ENST00000558528 CD44P16070 742 aaKnown RBP7.37□□□□□ -1.23
LDLR-209ENST00000558528 PBXIP1Q96AQ6 731 aa7.37□□□□□ -1.23
LDLR-209ENST00000558528 PTPN23Q9H3S7 1636 aa7.37□□□□□ -1.23
LDLR-209ENST00000558528 ATP10AO60312 1499 aa7.36□□□□□ -1.23
LDLR-209ENST00000558528 C9orf84Q5VXU9 1444 aa7.36□□□□□ -1.23
LDLR-209ENST00000558528 TTLL13PA6NNM8 815 aa7.36□□□□□ -1.23
LDLR-209ENST00000558528 HNRNPMP52272 730 aaKnown RBP eCLIP7.36□□□□□ -1.23
LDLR-209ENST00000558528 EN1Q05925 392 aaPredicted RBP7.36□□□□□ -1.23
LDLR-209ENST00000558528 TUSC1Q2TAM9 212 aa7.36□□□□□ -1.23
LDLR-209ENST00000558528 CPS1P31327 1500 aa7.36□□□□□ -1.23
LDLR-209ENST00000558528 PLA2R1Q13018 1463 aa7.36□□□□□ -1.23
LDLR-209ENST00000558528 HFM1A2PYH4 1435 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 DAPK1P53355 1430 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 PTPRKQ15262 1439 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms