RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 RAB3GAP2Q9H2M9 1393 aa22.95■■□□□ 1.26
TPM1-211ENST00000558314 XPCQ01831 940 aaPredicted RBP22.94■■□□□ 1.26
TPM1-211ENST00000558314 LRPPRCP42704 1394 aaKnown RBP22.93■■□□□ 1.26
TPM1-211ENST00000558314 PLEKHH1Q9ULM0 1364 aa22.92■■□□□ 1.26
TPM1-211ENST00000558314 NGLY1Q96IV0 654 aa22.92■■□□□ 1.26
TPM1-211ENST00000558314 PRAG1Q86YV5 1406 aa22.91■■□□□ 1.26
TPM1-211ENST00000558314 ACIN1Q9UKV3 1341 aaKnown RBP22.91■■□□□ 1.26
TPM1-211ENST00000558314 IFT172Q9UG01 1749 aa22.91■■□□□ 1.26
TPM1-211ENST00000558314 PIK3C2GO75747 1445 aa22.9■■□□□ 1.26
TPM1-211ENST00000558314 SOS2Q07890 1332 aaPredicted RBP22.89■■□□□ 1.26
TPM1-211ENST00000558314 FOXO3O43524 673 aa22.89■■□□□ 1.25
TPM1-211ENST00000558314 SAFB2Q14151 953 aaKnown RBP eCLIP22.89■■□□□ 1.25
TPM1-211ENST00000558314 CFAP70Q5T0N1 1121 aa22.89■■□□□ 1.25
TPM1-211ENST00000558314 QTRT2Q9H974 415 aaKnown RBP22.88■■□□□ 1.25
TPM1-211ENST00000558314 YTHDC2Q9H6S0 1430 aaKnown RBP22.88■■□□□ 1.25
TPM1-211ENST00000558314 CDC42BPGQ6DT37 1551 aa22.87■■□□□ 1.25
TPM1-211ENST00000558314 ABCC11Q96J66 1382 aa22.87■■□□□ 1.25
TPM1-211ENST00000558314 NPHP3Q7Z494 1330 aa22.86■■□□□ 1.25
TPM1-211ENST00000558314 KDM2AQ9Y2K7 1162 aa22.86■■□□□ 1.25
TPM1-211ENST00000558314 TECPR2O15040 1411 aa22.85■■□□□ 1.25
TPM1-211ENST00000558314 C14orf93Q9H972 538 aaKnown RBP22.85■■□□□ 1.25
TPM1-211ENST00000558314 DHX57Q6P158 1386 aaKnown RBP22.84■■□□□ 1.25
TPM1-211ENST00000558314 PLEKHG5O94827 1062 aa22.83■■□□□ 1.25
TPM1-211ENST00000558314 PRAM1Q96QH2 718 aa22.81■■□□□ 1.24
TPM1-211ENST00000558314 POGKQ9P215 609 aa22.81■■□□□ 1.24
TPM1-211ENST00000558314 USP21Q9UK80 565 aa22.81■■□□□ 1.24
TPM1-211ENST00000558314 LAMC1P11047 1609 aa22.81■■□□□ 1.24
TPM1-211ENST00000558314 KNDC1Q76NI1 1749 aa22.8■■□□□ 1.24
TPM1-211ENST00000558314 RBM6P78332 1123 aaKnown RBP22.8■■□□□ 1.24
TPM1-211ENST00000558314 DCAF11Q8TEB1 546 aa22.79■■□□□ 1.24
TPM1-211ENST00000558314 UPF1Q92900 1129 aaKnown RBP eCLIP22.79■■□□□ 1.24
TPM1-211ENST00000558314 MYOM2P54296 1465 aa22.79■■□□□ 1.24
TPM1-211ENST00000558314 TRAK1Q9UPV9 953 aa22.77■■□□□ 1.24
TPM1-211ENST00000558314 PXDNQ92626 1479 aa22.77■■□□□ 1.24
TPM1-211ENST00000558314 NRXN1Q9ULB1 1477 aa22.76■■□□□ 1.23
TPM1-211ENST00000558314 LMOD2Q6P5Q4 547 aa22.75■■□□□ 1.23
TPM1-211ENST00000558314 KRT28Q7Z3Y7 464 aa22.75■■□□□ 1.23
TPM1-211ENST00000558314 SIRT1Q96EB6 747 aa22.75■■□□□ 1.23
TPM1-211ENST00000558314 RGS12O14924 1447 aa22.74■■□□□ 1.23
TPM1-211ENST00000558314 FMN2Q9NZ56 1722 aa22.74■■□□□ 1.23
TPM1-211ENST00000558314 HAP1P54257 671 aaPredicted RBP22.74■■□□□ 1.23
TPM1-211ENST00000558314 HIRIP3Q9BW71 556 aaPredicted RBP22.74■■□□□ 1.23
TPM1-211ENST00000558314 TRPC5Q9UL62 973 aaPredicted RBP22.74■■□□□ 1.23
TPM1-211ENST00000558314 PHF8Q9UPP1 1060 aa22.74■■□□□ 1.23
TPM1-211ENST00000558314 CDK12Q9NYV4 1490 aaPredicted RBP22.73■■□□□ 1.23
TPM1-211ENST00000558314 PMFBP1Q8TBY8 1022 aa22.71■■□□□ 1.23
TPM1-211ENST00000558314 MINK1Q8N4C8 1332 aaPredicted RBP22.71■■□□□ 1.23
TPM1-211ENST00000558314 COL22A1Q8NFW1 1626 aaPredicted RBP22.71■■□□□ 1.23
TPM1-211ENST00000558314 SPATA31A3Q5VYP0 1347 aa22.69■■□□□ 1.22
TPM1-211ENST00000558314 PSME1Q06323 249 aa22.69■■□□□ 1.22
TPM1-211ENST00000558314 FNBP4Q8N3X1 1017 aaPredicted RBP22.69■■□□□ 1.22
TPM1-211ENST00000558314 KIF1AQ12756 1690 aa22.68■■□□□ 1.22
TPM1-211ENST00000558314 CABLES1Q8TDN4 633 aa22.67■■□□□ 1.22
TPM1-211ENST00000558314 RGPD8O14715 1765 aaPredicted RBP22.67■■□□□ 1.22
TPM1-211ENST00000558314 DLC1Q96QB1 1528 aa22.64■■□□□ 1.21
TPM1-211ENST00000558314 HRCP23327 699 aa22.64■■□□□ 1.21
TPM1-211ENST00000558314 ATRNO75882 1429 aa22.64■■□□□ 1.21
TPM1-211ENST00000558314 ADGRB1O14514 1584 aa22.63■■□□□ 1.21
TPM1-211ENST00000558314 TNS3Q68CZ2 1445 aa22.63■■□□□ 1.21
TPM1-211ENST00000558314 BCL9LQ86UU0 1499 aa22.6■■□□□ 1.21
TPM1-211ENST00000558314 ATAD2Q6PL18 1390 aa22.6■■□□□ 1.21
TPM1-211ENST00000558314 UNC5CLQ8IV45 518 aa22.59■■□□□ 1.21
TPM1-211ENST00000558314 GJD4Q96KN9 370 aaPredicted RBP22.59■■□□□ 1.21
TPM1-211ENST00000558314 CCDC9Q9Y3X0 531 aaKnown RBP22.59■■□□□ 1.21
TPM1-211ENST00000558314 MARF1Q9Y4F3 1742 aaKnown RBP22.59■■□□□ 1.21
TPM1-211ENST00000558314 ANKARQ7Z5J8 1434 aa22.58■■□□□ 1.21
TPM1-211ENST00000558314 WASLO00401 505 aaPredicted RBP22.58■■□□□ 1.21
TPM1-211ENST00000558314 PAK3O75914 559 aaPredicted RBP22.57■■□□□ 1.2
TPM1-211ENST00000558314 NGDNQ8NEJ9 315 aaKnown RBP22.57■■□□□ 1.2
TPM1-211ENST00000558314 STAC3Q96MF2 364 aa22.57■■□□□ 1.2
TPM1-211ENST00000558314 SBNO1A3KN83 1393 aa22.56■■□□□ 1.2
TPM1-211ENST00000558314 ARHGEF10O15013 1369 aa22.56■■□□□ 1.2
TPM1-211ENST00000558314 GPRASP1Q5JY77 1395 aa22.56■■□□□ 1.2
TPM1-211ENST00000558314 USP32Q8NFA0 1604 aa22.56■■□□□ 1.2
TPM1-211ENST00000558314 PRR36Q9H6K5 1346 aa22.56■■□□□ 1.2
TPM1-211ENST00000558314 EIF3AQ14152 1382 aaKnown RBP22.55■■□□□ 1.2
TPM1-211ENST00000558314 ADGRB2O60241 1585 aa22.55■■□□□ 1.2
TPM1-211ENST00000558314 SLIT2O94813 1529 aa22.52■■□□□ 1.19
TPM1-211ENST00000558314 TULP4Q9NRJ4 1543 aa22.52■■□□□ 1.19
TPM1-211ENST00000558314 A0A0G2JS52 829 aa22.51■■□□□ 1.19
TPM1-211ENST00000558314 MYT1Q01538 1121 aa22.51■■□□□ 1.19
TPM1-211ENST00000558314 RALGAPBQ86X10 1494 aa22.51■■□□□ 1.19
TPM1-211ENST00000558314 NUDT16Q96DE0 195 aaKnown RBP22.49■■□□□ 1.19
TPM1-211ENST00000558314 FAM83GA6ND36 823 aa22.48■■□□□ 1.19
TPM1-211ENST00000558314 NBPF1Q3BBV0 1214 aa22.48■■□□□ 1.19
TPM1-211ENST00000558314 CDK19Q9BWU1 502 aa22.48■■□□□ 1.19
TPM1-211ENST00000558314 ARHGEF28Q8N1W1 1705 aaKnown RBP22.48■■□□□ 1.19
TPM1-211ENST00000558314 GLI3P10071 1580 aa22.46■■□□□ 1.19
TPM1-211ENST00000558314 VPS72Q15906 364 aa22.46■■□□□ 1.19
TPM1-211ENST00000558314 SEPT12Q8IYM1 358 aa22.46■■□□□ 1.19
TPM1-211ENST00000558314 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.45■■□□□ 1.19
TPM1-211ENST00000558314 NUTM2GQ5VZR2 741 aa22.45■■□□□ 1.18
TPM1-211ENST00000558314 BTG4Q9NY30 223 aa22.45■■□□□ 1.18
TPM1-211ENST00000558314 PLCH1Q4KWH8 1693 aa22.45■■□□□ 1.18
TPM1-211ENST00000558314 ABCA3Q99758 1704 aa22.45■■□□□ 1.18
TPM1-211ENST00000558314 TRPM3Q9HCF6 1732 aaPredicted RBP22.43■■□□□ 1.18
TPM1-211ENST00000558314 NEUROD1Q13562 356 aa22.42■■□□□ 1.18
TPM1-211ENST00000558314 ATP7BP35670 1465 aa22.41■■□□□ 1.18
TPM1-211ENST00000558314 SRPK2P78362 688 aaKnown RBP22.41■■□□□ 1.18
TPM1-211ENST00000558314 PRDM11Q9NQV5 511 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms