RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ADGRB1O14514 1584 aa14.22□□□□□ -0.13
USP3-206ENST00000558157 SCAF11Q99590 1463 aaKnown RBP14.22□□□□□ -0.13
USP3-206ENST00000558157 CEP170BQ9Y4F5 1589 aaPredicted RBP14.22□□□□□ -0.13
USP3-206ENST00000558157 SENP3Q9H4L4 574 aaPredicted RBP14.21□□□□□ -0.13
USP3-206ENST00000558157 ZNF142P52746 1687 aaPredicted RBP14.21□□□□□ -0.14
USP3-206ENST00000558157 ASXL1Q8IXJ9 1541 aa14.21□□□□□ -0.14
USP3-206ENST00000558157 PTPRMP28827 1452 aa14.21□□□□□ -0.14
USP3-206ENST00000558157 ST20-MTHFSA0A0A6YYL1 179 aa14.21□□□□□ -0.14
USP3-206ENST00000558157 C14orf93Q9H972 538 aaKnown RBP14.21□□□□□ -0.14
USP3-206ENST00000558157 TMEM2Q9UHN6 1383 aa14.2□□□□□ -0.14
USP3-206ENST00000558157 NRXN3Q9Y4C0 1643 aa14.2□□□□□ -0.14
USP3-206ENST00000558157 SETD1AO15047 1707 aaKnown RBP14.19□□□□□ -0.14
USP3-206ENST00000558157 ALKQ9UM73 1620 aa14.19□□□□□ -0.14
USP3-206ENST00000558157 EXOC6Q8TAG9 804 aa14.19□□□□□ -0.14
USP3-206ENST00000558157 PNISRQ8TF01 805 aaKnown RBP14.19□□□□□ -0.14
USP3-206ENST00000558157 LRPPRCP42704 1394 aaKnown RBP14.18□□□□□ -0.14
USP3-206ENST00000558157 PDE3BQ13370 1112 aa14.18□□□□□ -0.14
USP3-206ENST00000558157 KTN1Q86UP2 1357 aaKnown RBP14.18□□□□□ -0.14
USP3-206ENST00000558157 SLIT1O75093 1534 aa14.18□□□□□ -0.14
USP3-206ENST00000558157 ARHGAP23Q9P227 1491 aa14.17□□□□□ -0.14
USP3-206ENST00000558157 RRP9O43818 475 aaKnown RBP14.17□□□□□ -0.14
USP3-206ENST00000558157 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.17□□□□□ -0.14
USP3-206ENST00000558157 TMEM132EQ6IEE7 984 aa14.16□□□□□ -0.14
USP3-206ENST00000558157 RCAN3Q9UKA8 241 aa14.16□□□□□ -0.14
USP3-206ENST00000558157 EIF3AQ14152 1382 aaKnown RBP14.16□□□□□ -0.14
USP3-206ENST00000558157 ARHGEF28Q8N1W1 1705 aaKnown RBP14.16□□□□□ -0.14
USP3-206ENST00000558157 L1TD1Q5T7N2 865 aaKnown RBP14.15□□□□□ -0.14
USP3-206ENST00000558157 ZMYND15Q9H091 742 aa14.15□□□□□ -0.14
USP3-206ENST00000558157 SETD1BQ9UPS6 1966 aaKnown RBP14.14□□□□□ -0.15
USP3-206ENST00000558157 TESK2Q96S53 571 aa14.14□□□□□ -0.15
USP3-206ENST00000558157 QRICH2Q9H0J4 1663 aa14.13□□□□□ -0.15
USP3-206ENST00000558157 BRD4O60885 1362 aaPredicted RBP14.13□□□□□ -0.15
USP3-206ENST00000558157 LTKP29376 864 aa14.13□□□□□ -0.15
USP3-206ENST00000558157 HDGFP51858 240 aaKnown RBP14.13□□□□□ -0.15
USP3-206ENST00000558157 DISP3Q9P2K9 1392 aa14.12□□□□□ -0.15
USP3-206ENST00000558157 THEMISQ8N1K5 641 aaPredicted RBP14.12□□□□□ -0.15
USP3-206ENST00000558157 TRAK1Q9UPV9 953 aa14.12□□□□□ -0.15
USP3-206ENST00000558157 PLEKHG1Q9ULL1 1385 aa14.12□□□□□ -0.15
USP3-206ENST00000558157 TMC1Q8TDI8 760 aa14.12□□□□□ -0.15
USP3-206ENST00000558157 POLR3GLQ9BT43 218 aa14.11□□□□□ -0.15
USP3-206ENST00000558157 YTHDC2Q9H6S0 1430 aaKnown RBP14.11□□□□□ -0.15
USP3-206ENST00000558157 VSIG10Q8N0Z9 540 aa14.11□□□□□ -0.15
USP3-206ENST00000558157 TXNDC2Q86VQ3 553 aa14.1□□□□□ -0.15
USP3-206ENST00000558157 HSP90AA2PQ14568 343 aaPredicted RBP14.1□□□□□ -0.15
USP3-206ENST00000558157 EID1Q9Y6B2 187 aa14.1□□□□□ -0.15
USP3-206ENST00000558157 ADAMTS13Q76LX8 1427 aa14.09□□□□□ -0.15
USP3-206ENST00000558157 FRAT2O75474 233 aaPredicted RBP14.09□□□□□ -0.15
USP3-206ENST00000558157 INSRP06213 1382 aa14.09□□□□□ -0.15
USP3-206ENST00000558157 FAM161AQ3B820 660 aa14.09□□□□□ -0.15
USP3-206ENST00000558157 STK26Q9P289 416 aa14.09□□□□□ -0.15
USP3-206ENST00000558157 CENPJQ9HC77 1338 aaPredicted RBP14.09□□□□□ -0.15
USP3-206ENST00000558157 TMF1P82094 1093 aa14.08□□□□□ -0.16
USP3-206ENST00000558157 METP08581 1390 aa14.08□□□□□ -0.16
USP3-206ENST00000558157 KNDC1Q76NI1 1749 aa14.08□□□□□ -0.16
USP3-206ENST00000558157 KDM4FA0A1W2PPD8 638 aa14.07□□□□□ -0.16
USP3-206ENST00000558157 HSP90AA1P07900 732 aaKnown RBP14.07□□□□□ -0.16
USP3-206ENST00000558157 RRAGDQ9NQL2 400 aaPredicted RBP14.07□□□□□ -0.16
USP3-206ENST00000558157 SBNO2Q9Y2G9 1366 aa14.07□□□□□ -0.16
USP3-206ENST00000558157 CLCN1P35523 988 aa14.06□□□□□ -0.16
USP3-206ENST00000558157 DLC1Q96QB1 1528 aa14.06□□□□□ -0.16
USP3-206ENST00000558157 MED14O60244 1454 aa14.06□□□□□ -0.16
USP3-206ENST00000558157 DIP2AQ14689 1571 aa14.06□□□□□ -0.16
USP3-206ENST00000558157 RALBP1Q15311 655 aa14.05□□□□□ -0.16
USP3-206ENST00000558157 CENPQQ7L2Z9 268 aaPredicted RBP14.05□□□□□ -0.16
USP3-206ENST00000558157 MYBBP1AQ9BQG0 1328 aaKnown RBP14.04□□□□□ -0.16
USP3-206ENST00000558157 PNNQ9H307 717 aaKnown RBP14.04□□□□□ -0.16
USP3-206ENST00000558157 KDM2BQ8NHM5 1336 aa14.04□□□□□ -0.16
USP3-206ENST00000558157 MYOM1P52179 1685 aa14.04□□□□□ -0.16
USP3-206ENST00000558157 CPS1P31327 1500 aa14.04□□□□□ -0.16
USP3-206ENST00000558157 TULP4Q9NRJ4 1543 aa14.03□□□□□ -0.16
USP3-206ENST00000558157 SLC26A8Q96RN1 970 aa14.03□□□□□ -0.16
USP3-206ENST00000558157 SLC4A3P48751 1232 aa14.02□□□□□ -0.16
USP3-206ENST00000558157 SAFB2Q14151 953 aaKnown RBP eCLIP14.02□□□□□ -0.16
USP3-206ENST00000558157 PRAM1Q96QH2 718 aa14.02□□□□□ -0.16
USP3-206ENST00000558157 ABCC11Q96J66 1382 aa14.02□□□□□ -0.16
USP3-206ENST00000558157 TECPR2O15040 1411 aa14.02□□□□□ -0.17
USP3-206ENST00000558157 ANKLE2Q86XL3 938 aa14.02□□□□□ -0.17
USP3-206ENST00000558157 C8orf34Q49A92 452 aa14.01□□□□□ -0.17
USP3-206ENST00000558157 PTPRUQ92729 1446 aa14.01□□□□□ -0.17
USP3-206ENST00000558157 PLEKHH1Q9ULM0 1364 aa14.01□□□□□ -0.17
USP3-206ENST00000558157 NAP1L5Q96NT1 182 aaPredicted RBP14.01□□□□□ -0.17
USP3-206ENST00000558157 POGKQ9P215 609 aa14□□□□□ -0.17
USP3-206ENST00000558157 CDCA8Q53HL2 280 aa14□□□□□ -0.17
USP3-206ENST00000558157 SLC24A1O60721 1099 aa13.99□□□□□ -0.17
USP3-206ENST00000558157 TBX22Q9Y458 520 aa13.99□□□□□ -0.17
USP3-206ENST00000558157 XRN1Q8IZH2 1706 aaKnown RBP13.99□□□□□ -0.17
USP3-206ENST00000558157 NPHP4O75161 1426 aaPredicted RBP13.98□□□□□ -0.17
USP3-206ENST00000558157 WAPLQ7Z5K2 1190 aa13.98□□□□□ -0.17
USP3-206ENST00000558157 MINK1Q8N4C8 1332 aaPredicted RBP13.98□□□□□ -0.17
USP3-206ENST00000558157 FAM135BQ49AJ0 1406 aa13.98□□□□□ -0.17
USP3-206ENST00000558157 CRBNQ96SW2 442 aa13.98□□□□□ -0.17
USP3-206ENST00000558157 ROBO2Q9HCK4 1378 aa13.97□□□□□ -0.17
USP3-206ENST00000558157 BECN1Q14457 450 aa13.96□□□□□ -0.17
USP3-206ENST00000558157 PODXL2Q9NZ53 605 aa13.96□□□□□ -0.17
USP3-206ENST00000558157 NCKAP5LQ9HCH0 1330 aa13.96□□□□□ -0.17
USP3-206ENST00000558157 LMTK3Q96Q04 1460 aa13.96□□□□□ -0.17
USP3-206ENST00000558157 EVC2Q86UK5 1308 aa13.96□□□□□ -0.17
USP3-206ENST00000558157 NLRP13Q86W25 1043 aa13.95□□□□□ -0.18
USP3-206ENST00000558157 PTCH1Q13635 1447 aa13.95□□□□□ -0.18
USP3-206ENST00000558157 CHD2O14647 1828 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms