RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 BRICD5Q6PL45 260 aa7.66□□□□□ -1.18
SPG11-206ENST00000558093 RIC3Q7Z5B4 369 aa7.66□□□□□ -1.18
SPG11-206ENST00000558093 THAP11Q96EK4 314 aa7.66□□□□□ -1.18
SPG11-206ENST00000558093 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.66□□□□□ -1.18
SPG11-206ENST00000558093 CLK2P49760 499 aaKnown RBP7.65□□□□□ -1.18
SPG11-206ENST00000558093 USB1Q9BQ65 265 aaKnown RBP7.65□□□□□ -1.18
SPG11-206ENST00000558093 MTMR2Q13614 643 aa7.64□□□□□ -1.19
SPG11-206ENST00000558093 RETREG3Q86VR2 466 aa7.64□□□□□ -1.19
SPG11-206ENST00000558093 SYMPKQ92797 1274 aaKnown RBP7.64□□□□□ -1.19
SPG11-206ENST00000558093 PRDM9Q9NQV7 894 aa7.64□□□□□ -1.19
SPG11-206ENST00000558093 POLR3EQ9NVU0 708 aa7.64□□□□□ -1.19
SPG11-206ENST00000558093 PCDHGC3Q9UN70 934 aa7.64□□□□□ -1.19
SPG11-206ENST00000558093 SPTLC1O15269 473 aa7.63□□□□□ -1.19
SPG11-206ENST00000558093 GJA5P36382 358 aa7.63□□□□□ -1.19
SPG11-206ENST00000558093 MSS51Q4VC12 460 aa7.63□□□□□ -1.19
SPG11-206ENST00000558093 IL27Q8NEV9 243 aa7.63□□□□□ -1.19
SPG11-206ENST00000558093 ZBTB3Q9H5J0 574 aa7.63□□□□□ -1.19
SPG11-206ENST00000558093 PLEKHG3A1L390 1219 aa7.62□□□□□ -1.19
SPG11-206ENST00000558093 NUTM2BA6NNL0 878 aaPredicted RBP7.62□□□□□ -1.19
SPG11-206ENST00000558093 NUTM2EB1AL46 878 aaPredicted RBP7.62□□□□□ -1.19
SPG11-206ENST00000558093 RNF223E7ERA6 249 aa7.62□□□□□ -1.19
SPG11-206ENST00000558093 SH3D19Q5HYK7 790 aa7.62□□□□□ -1.19
SPG11-206ENST00000558093 NUTM2DQ5VT03 806 aaPredicted RBP7.62□□□□□ -1.19
SPG11-206ENST00000558093 NUTM2AQ8IVF1 878 aaPredicted RBP7.62□□□□□ -1.19
SPG11-206ENST00000558093 LIMD1Q9UGP4 676 aa7.62□□□□□ -1.19
SPG11-206ENST00000558093 SPDYE5A6NIY4 337 aa7.61□□□□□ -1.19
SPG11-206ENST00000558093 PPEF1O14829 653 aaPredicted RBP7.61□□□□□ -1.19
SPG11-206ENST00000558093 FAM160A2Q8N612 972 aaPredicted RBP7.61□□□□□ -1.19
SPG11-206ENST00000558093 PCDHB15Q9Y5E8 787 aa7.61□□□□□ -1.19
SPG11-206ENST00000558093 SKIV2LQ15477 1246 aaKnown RBP7.6□□□□□ -1.19
SPG11-206ENST00000558093 ANKLE1Q8NAG6 615 aa7.6□□□□□ -1.19
SPG11-206ENST00000558093 CABLES1Q8TDN4 633 aa7.6□□□□□ -1.19
SPG11-206ENST00000558093 TSC1Q92574 1164 aa7.6□□□□□ -1.19
SPG11-206ENST00000558093 FCF1Q9Y324 198 aaKnown RBP7.6□□□□□ -1.19
SPG11-206ENST00000558093 HRCP23327 699 aa7.59□□□□□ -1.19
SPG11-206ENST00000558093 PRPF38BQ5VTL8 546 aaKnown RBP7.59□□□□□ -1.19
SPG11-206ENST00000558093 PRR7Q8TB68 274 aa7.59□□□□□ -1.19
SPG11-206ENST00000558093 RGS20O76081 388 aa7.58□□□□□ -1.2
SPG11-206ENST00000558093 JUNDP17535 347 aa7.58□□□□□ -1.2
SPG11-206ENST00000558093 TUSC1Q2TAM9 212 aa7.58□□□□□ -1.2
SPG11-206ENST00000558093 PCMTD1Q96MG8 357 aaPredicted RBP7.58□□□□□ -1.2
SPG11-206ENST00000558093 DXOO77932 396 aaKnown RBP7.57□□□□□ -1.2
SPG11-206ENST00000558093 QPCTQ16769 361 aa7.57□□□□□ -1.2
SPG11-206ENST00000558093 CCDC24Q8N4L8 307 aa7.57□□□□□ -1.2
SPG11-206ENST00000558093 PRKD2Q9BZL6 878 aa7.57□□□□□ -1.2
SPG11-206ENST00000558093 MMP16P51512 607 aa7.56□□□□□ -1.2
SPG11-206ENST00000558093 HELBQ8NG08 1087 aaPredicted RBP7.56□□□□□ -1.2
SPG11-206ENST00000558093 ZBTB24O43167 697 aaPredicted RBP7.55□□□□□ -1.2
SPG11-206ENST00000558093 LILRB3O75022 631 aa7.55□□□□□ -1.2
SPG11-206ENST00000558093 NUDT12Q9BQG2 462 aa7.55□□□□□ -1.2
SPG11-206ENST00000558093 CFAP99D6REC4 459 aa7.54□□□□□ -1.2
SPG11-206ENST00000558093 SLC19A1P41440 591 aa7.54□□□□□ -1.2
SPG11-206ENST00000558093 PROCA1Q8NCQ7 364 aaPredicted RBP7.54□□□□□ -1.2
SPG11-206ENST00000558093 GOPCQ9HD26 462 aa7.54□□□□□ -1.2
SPG11-206ENST00000558093 PTPRNQ16849 979 aa7.53□□□□□ -1.2
SPG11-206ENST00000558093 PLA2G2CQ5R387 149 aa7.53□□□□□ -1.2
SPG11-206ENST00000558093 DESI1Q6ICB0 168 aa7.53□□□□□ -1.2
SPG11-206ENST00000558093 V9GY48 417 aaPredicted RBP7.53□□□□□ -1.2
SPG11-206ENST00000558093 CCNYL3P0C7X3 344 aa7.52□□□□□ -1.21
SPG11-206ENST00000558093 RTL5Q5HYW3 569 aaPredicted RBP7.52□□□□□ -1.21
SPG11-206ENST00000558093 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.52□□□□□ -1.21
SPG11-206ENST00000558093 CTHP32929 405 aa7.5□□□□□ -1.21
SPG11-206ENST00000558093 LIAT1Q6ZQX7 453 aa7.5□□□□□ -1.21
SPG11-206ENST00000558093 AP1G2O75843 785 aa7.49□□□□□ -1.21
SPG11-206ENST00000558093 CD2BP2O95400 341 aaKnown RBP7.49□□□□□ -1.21
SPG11-206ENST00000558093 RPIAP49247 311 aa7.49□□□□□ -1.21
SPG11-206ENST00000558093 LYPD8Q6UX82 237 aa7.49□□□□□ -1.21
SPG11-206ENST00000558093 TRIM32Q13049 653 aa7.48□□□□□ -1.21
SPG11-206ENST00000558093 ZNF697Q5TEC3 545 aa7.48□□□□□ -1.21
SPG11-206ENST00000558093 SPRYD7Q5W111 196 aa7.48□□□□□ -1.21
SPG11-206ENST00000558093 PPP2R2DQ66LE6 453 aa7.48□□□□□ -1.21
SPG11-206ENST00000558093 RFC5P40937 340 aa7.47□□□□□ -1.21
SPG11-206ENST00000558093 ZNF598Q86UK7 904 aaKnown RBP7.47□□□□□ -1.21
SPG11-206ENST00000558093 EMID1Q96A84 441 aaPredicted RBP7.47□□□□□ -1.21
SPG11-206ENST00000558093 PER1O15534 1290 aaPredicted RBP7.46□□□□□ -1.22
SPG11-206ENST00000558093 KCNH2Q12809 1159 aa7.46□□□□□ -1.22
SPG11-206ENST00000558093 IRX2Q9BZI1 471 aaPredicted RBP7.46□□□□□ -1.22
SPG11-206ENST00000558093 UNC93B1Q9H1C4 597 aa7.46□□□□□ -1.22
SPG11-206ENST00000558093 EVA1BQ9NVM1 165 aa7.46□□□□□ -1.22
SPG11-206ENST00000558093 MAP10Q9P2G4 905 aa7.46□□□□□ -1.22
SPG11-206ENST00000558093 CTDSPL2Q05D32 466 aa7.45□□□□□ -1.22
SPG11-206ENST00000558093 FBXO31Q5XUX0 539 aaPredicted RBP7.45□□□□□ -1.22
SPG11-206ENST00000558093 USP17L8P0C7I0 530 aa7.44□□□□□ -1.22
SPG11-206ENST00000558093 FOXC1Q12948 553 aa7.44□□□□□ -1.22
SPG11-206ENST00000558093 TMEM259Q4ZIN3 620 aa7.44□□□□□ -1.22
SPG11-206ENST00000558093 F12P00748 615 aaPredicted RBP7.43□□□□□ -1.22
SPG11-206ENST00000558093 LINC01559Q495D7 138 aa7.43□□□□□ -1.22
SPG11-206ENST00000558093 PTCRAQ6ISU1 281 aaPredicted RBP7.43□□□□□ -1.22
SPG11-206ENST00000558093 LRRN4Q8WUT4 740 aa7.43□□□□□ -1.22
SPG11-206ENST00000558093 TNFRSF10AO00220 468 aa7.42□□□□□ -1.22
SPG11-206ENST00000558093 PDZRN3Q9UPQ7 1066 aa7.42□□□□□ -1.22
SPG11-206ENST00000558093 GFRA3O60609 400 aa7.41□□□□□ -1.22
SPG11-206ENST00000558093 WNT7BP56706 349 aa7.41□□□□□ -1.22
SPG11-206ENST00000558093 ARMC2Q8NEN0 867 aa7.41□□□□□ -1.22
SPG11-206ENST00000558093 AGERQ15109 404 aa7.4□□□□□ -1.22
SPG11-206ENST00000558093 NBPF14Q5TI25 921 aa7.4□□□□□ -1.22
SPG11-206ENST00000558093 PNMA1Q8ND90 353 aa7.4□□□□□ -1.22
SPG11-206ENST00000558093 BAP1Q92560 729 aa7.4□□□□□ -1.22
SPG11-206ENST00000558093 LAPTM4AQ15012 233 aa7.39□□□□□ -1.23
SPG11-206ENST00000558093 NR6A1Q15406 480 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms