RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 KIAA1210Q9ULL0 1709 aa20.47■□□□□ 0.87
USP3-205ENST00000557884 DLC1Q96QB1 1528 aa20.47■□□□□ 0.87
USP3-205ENST00000557884 SLAIN2Q9P270 581 aa20.46■□□□□ 0.87
USP3-205ENST00000557884 NALCNQ8IZF0 1738 aa20.45■□□□□ 0.86
USP3-205ENST00000557884 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.45■□□□□ 0.86
USP3-205ENST00000557884 TIMELESSQ9UNS1 1208 aa20.45■□□□□ 0.86
USP3-205ENST00000557884 TRPM1Q7Z4N2 1603 aa20.45■□□□□ 0.86
USP3-205ENST00000557884 DCCP43146 1447 aa20.44■□□□□ 0.86
USP3-205ENST00000557884 HIRIP3Q9BW71 556 aaPredicted RBP20.43■□□□□ 0.86
USP3-205ENST00000557884 MINK1Q8N4C8 1332 aaPredicted RBP20.43■□□□□ 0.86
USP3-205ENST00000557884 RALGAPBQ86X10 1494 aa20.43■□□□□ 0.86
USP3-205ENST00000557884 CARD11Q9BXL7 1154 aa20.41■□□□□ 0.86
USP3-205ENST00000557884 MST1RQ04912 1400 aa20.41■□□□□ 0.86
USP3-205ENST00000557884 NUTM2FA1L443 756 aa20.4■□□□□ 0.86
USP3-205ENST00000557884 GPRASP1Q5JY77 1395 aa20.4■□□□□ 0.86
USP3-205ENST00000557884 CENPJQ9HC77 1338 aaPredicted RBP20.37■□□□□ 0.85
USP3-205ENST00000557884 ARHGEF28Q8N1W1 1705 aaKnown RBP20.37■□□□□ 0.85
USP3-205ENST00000557884 HSPA1LP34931 641 aa20.37■□□□□ 0.85
USP3-205ENST00000557884 CDC42BPGQ6DT37 1551 aa20.37■□□□□ 0.85
USP3-205ENST00000557884 BRINP3Q76B58 766 aa20.36■□□□□ 0.85
USP3-205ENST00000557884 C1orf167Q5SNV9 1468 aa20.36■□□□□ 0.85
USP3-205ENST00000557884 ROBO1Q9Y6N7 1651 aa20.34■□□□□ 0.85
USP3-205ENST00000557884 EIF3AQ14152 1382 aaKnown RBP20.34■□□□□ 0.85
USP3-205ENST00000557884 ORAI2Q96SN7 254 aa20.33■□□□□ 0.85
USP3-205ENST00000557884 WASLO00401 505 aaPredicted RBP20.32■□□□□ 0.84
USP3-205ENST00000557884 ESCO1Q5FWF5 840 aa20.31■□□□□ 0.84
USP3-205ENST00000557884 ADGRB2O60241 1585 aa20.3■□□□□ 0.84
USP3-205ENST00000557884 DDX17Q92841 729 aaKnown RBP20.3■□□□□ 0.84
USP3-205ENST00000557884 CDK19Q9BWU1 502 aa20.29■□□□□ 0.84
USP3-205ENST00000557884 FMN2Q9NZ56 1722 aa20.27■□□□□ 0.84
USP3-205ENST00000557884 PRR36Q9H6K5 1346 aa20.27■□□□□ 0.83
USP3-205ENST00000557884 USP47Q96K76 1375 aa20.25■□□□□ 0.83
USP3-205ENST00000557884 SRPK2P78362 688 aaKnown RBP20.25■□□□□ 0.83
USP3-205ENST00000557884 QRICH2Q9H0J4 1663 aa20.25■□□□□ 0.83
USP3-205ENST00000557884 ST20-MTHFSA0A0A6YYL1 179 aa20.24■□□□□ 0.83
USP3-205ENST00000557884 CABP2Q9NPB3 220 aa20.24■□□□□ 0.83
USP3-205ENST00000557884 ANKARQ7Z5J8 1434 aa20.24■□□□□ 0.83
USP3-205ENST00000557884 TULP4Q9NRJ4 1543 aa20.23■□□□□ 0.83
USP3-205ENST00000557884 PMFBP1Q8TBY8 1022 aa20.23■□□□□ 0.83
USP3-205ENST00000557884 NUDT16Q96DE0 195 aaKnown RBP20.23■□□□□ 0.83
USP3-205ENST00000557884 PHF8Q9UPP1 1060 aa20.23■□□□□ 0.83
USP3-205ENST00000557884 FOXO3O43524 673 aa20.22■□□□□ 0.83
USP3-205ENST00000557884 XPCQ01831 940 aaPredicted RBP20.22■□□□□ 0.83
USP3-205ENST00000557884 EVC2Q86UK5 1308 aa20.22■□□□□ 0.83
USP3-205ENST00000557884 AHDC1Q5TGY3 1603 aaPredicted RBP20.21■□□□□ 0.83
USP3-205ENST00000557884 USP32Q8NFA0 1604 aa20.2■□□□□ 0.82
USP3-205ENST00000557884 ATP7BP35670 1465 aa20.2■□□□□ 0.82
USP3-205ENST00000557884 NPHP3Q7Z494 1330 aa20.19■□□□□ 0.82
USP3-205ENST00000557884 SBNO2Q9Y2G9 1366 aa20.19■□□□□ 0.82
USP3-205ENST00000557884 PHLPP1O60346 1717 aa20.19■□□□□ 0.82
USP3-205ENST00000557884 TESK2Q96S53 571 aa20.18■□□□□ 0.82
USP3-205ENST00000557884 CCDC61Q9Y6R9 512 aa20.17■□□□□ 0.82
USP3-205ENST00000557884 COL16A1Q07092 1604 aaPredicted RBP20.16■□□□□ 0.82
USP3-205ENST00000557884 NHSL1Q5SYE7 1610 aa20.16■□□□□ 0.82
USP3-205ENST00000557884 SOS2Q07890 1332 aaPredicted RBP20.16■□□□□ 0.82
USP3-205ENST00000557884 NGDNQ8NEJ9 315 aaKnown RBP20.15■□□□□ 0.82
USP3-205ENST00000557884 JCADQ9P266 1359 aa20.14■□□□□ 0.81
USP3-205ENST00000557884 KRT28Q7Z3Y7 464 aa20.14■□□□□ 0.81
USP3-205ENST00000557884 RGPD8O14715 1765 aaPredicted RBP20.13■□□□□ 0.81
USP3-205ENST00000557884 KIF1AQ12756 1690 aa20.13■□□□□ 0.81
USP3-205ENST00000557884 PPIP5K1Q6PFW1 1433 aa20.13■□□□□ 0.81
USP3-205ENST00000557884 HSPA5P11021 654 aaKnown RBP20.13■□□□□ 0.81
USP3-205ENST00000557884 EIF4G2P78344 907 aaKnown RBP eCLIP20.13■□□□□ 0.81
USP3-205ENST00000557884 PSME1Q06323 249 aa20.13■□□□□ 0.81
USP3-205ENST00000557884 LRRC59Q96AG4 307 aaKnown RBP20.13■□□□□ 0.81
USP3-205ENST00000557884 PXDNQ92626 1479 aa20.12■□□□□ 0.81
USP3-205ENST00000557884 CABP1Q9NZU7 370 aa20.12■□□□□ 0.81
USP3-205ENST00000557884 PLEKHG3A1L390 1219 aa20.11■□□□□ 0.81
USP3-205ENST00000557884 DISP3Q9P2K9 1392 aa20.1■□□□□ 0.81
USP3-205ENST00000557884 ACEP12821 1306 aa20.1■□□□□ 0.81
USP3-205ENST00000557884 ATAD2Q6PL18 1390 aa20.09■□□□□ 0.81
USP3-205ENST00000557884 TMF1P82094 1093 aa20.09■□□□□ 0.81
USP3-205ENST00000557884 PNPLA6Q8IY17 1366 aa20.08■□□□□ 0.8
USP3-205ENST00000557884 TOPAZ1Q8N9V7 1692 aa20.07■□□□□ 0.8
USP3-205ENST00000557884 SLC24A1O60721 1099 aa20.07■□□□□ 0.8
USP3-205ENST00000557884 LMOD2Q6P5Q4 547 aa20.07■□□□□ 0.8
USP3-205ENST00000557884 TMC1Q8TDI8 760 aa20.07■□□□□ 0.8
USP3-205ENST00000557884 ITSN1Q15811 1721 aa20.07■□□□□ 0.8
USP3-205ENST00000557884 POLR3AO14802 1390 aaPredicted RBP20.07■□□□□ 0.8
USP3-205ENST00000557884 SPATA31A3Q5VYP0 1347 aa20.06■□□□□ 0.8
USP3-205ENST00000557884 NUTM2BA6NNL0 878 aaPredicted RBP20.06■□□□□ 0.8
USP3-205ENST00000557884 NUTM2EB1AL46 878 aaPredicted RBP20.06■□□□□ 0.8
USP3-205ENST00000557884 PAK3O75914 559 aaPredicted RBP20.06■□□□□ 0.8
USP3-205ENST00000557884 PLEKHG5O94827 1062 aa20.06■□□□□ 0.8
USP3-205ENST00000557884 NUTM2AQ8IVF1 878 aaPredicted RBP20.06■□□□□ 0.8
USP3-205ENST00000557884 SBNO1A3KN83 1393 aa20.05■□□□□ 0.8
USP3-205ENST00000557884 TNS3Q68CZ2 1445 aa20.04■□□□□ 0.8
USP3-205ENST00000557884 POLR3GLQ9BT43 218 aa20.03■□□□□ 0.8
USP3-205ENST00000557884 SLC12A5Q9H2X9 1139 aa20.03■□□□□ 0.8
USP3-205ENST00000557884 SPATA31A6Q5VVP1 1343 aa20.02■□□□□ 0.8
USP3-205ENST00000557884 PUS7Q96PZ0 661 aaKnown RBP20.02■□□□□ 0.8
USP3-205ENST00000557884 CDCA8Q53HL2 280 aa20.01■□□□□ 0.79
USP3-205ENST00000557884 SHPRHQ149N8 1683 aa20■□□□□ 0.79
USP3-205ENST00000557884 MED1Q15648 1581 aaPredicted RBP20■□□□□ 0.79
USP3-205ENST00000557884 LRP6O75581 1613 aa19.99■□□□□ 0.79
USP3-205ENST00000557884 NUTM2GQ5VZR2 741 aa19.99■□□□□ 0.79
USP3-205ENST00000557884 USP6P35125 1406 aa19.99■□□□□ 0.79
USP3-205ENST00000557884 ARHGEF10O15013 1369 aa19.98■□□□□ 0.79
USP3-205ENST00000557884 MEX3CQ5U5Q3 659 aaKnown RBP19.98■□□□□ 0.79
USP3-205ENST00000557884 CABLES1Q8TDN4 633 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms