RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 BRD4O60885 1362 aaPredicted RBP16.96■□□□□ 0.3
SHMT2-233ENST00000557529 MED14O60244 1454 aa16.95■□□□□ 0.3
SHMT2-233ENST00000557529 ZNF142P52746 1687 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-233ENST00000557529 CCDC184Q52MB2 194 aa16.94■□□□□ 0.3
SHMT2-233ENST00000557529 TBX22Q9Y458 520 aa16.94■□□□□ 0.3
SHMT2-233ENST00000557529 ATAD2Q6PL18 1390 aa16.94■□□□□ 0.3
SHMT2-233ENST00000557529 MINK1Q8N4C8 1332 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-233ENST00000557529 SETD1BQ9UPS6 1966 aaKnown RBP16.93■□□□□ 0.3
SHMT2-233ENST00000557529 DIP2AQ14689 1571 aa16.93■□□□□ 0.3
SHMT2-233ENST00000557529 AMER1Q5JTC6 1135 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-233ENST00000557529 CC2D1BQ5T0F9 858 aaKnown RBP16.93■□□□□ 0.3
SHMT2-233ENST00000557529 NLRP13Q86W25 1043 aa16.93■□□□□ 0.3
SHMT2-233ENST00000557529 TMC1Q8TDI8 760 aa16.93■□□□□ 0.3
SHMT2-233ENST00000557529 CPS1P31327 1500 aa16.93■□□□□ 0.3
SHMT2-233ENST00000557529 SRPK2P78362 688 aaKnown RBP16.92■□□□□ 0.3
SHMT2-233ENST00000557529 WAPLQ7Z5K2 1190 aa16.9■□□□□ 0.3
SHMT2-233ENST00000557529 SLC12A5Q9H2X9 1139 aa16.9■□□□□ 0.3
SHMT2-233ENST00000557529 CABP2Q9NPB3 220 aa16.9■□□□□ 0.3
SHMT2-233ENST00000557529 PLEKHH1Q9ULM0 1364 aa16.9■□□□□ 0.3
SHMT2-233ENST00000557529 ANKLE2Q86XL3 938 aa16.89■□□□□ 0.3
SHMT2-233ENST00000557529 ANKRD36BQ8N2N9 1353 aa16.89■□□□□ 0.29
SHMT2-233ENST00000557529 FAM9BQ8IZU0 186 aa16.89■□□□□ 0.29
SHMT2-233ENST00000557529 SLC26A8Q96RN1 970 aa16.89■□□□□ 0.29
SHMT2-233ENST00000557529 CDK19Q9BWU1 502 aa16.89■□□□□ 0.29
SHMT2-233ENST00000557529 CARD14Q9BXL6 1004 aa16.89■□□□□ 0.29
SHMT2-233ENST00000557529 PIK3R4Q99570 1358 aa16.87■□□□□ 0.29
SHMT2-233ENST00000557529 NSD3Q9BZ95 1437 aa16.87■□□□□ 0.29
SHMT2-233ENST00000557529 PNISRQ8TF01 805 aaKnown RBP16.86■□□□□ 0.29
SHMT2-233ENST00000557529 TERF2IPQ9NYB0 399 aa16.86■□□□□ 0.29
SHMT2-233ENST00000557529 USP32Q8NFA0 1604 aa16.86■□□□□ 0.29
SHMT2-233ENST00000557529 ROBO2Q9HCK4 1378 aa16.85■□□□□ 0.29
SHMT2-233ENST00000557529 WASLO00401 505 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-233ENST00000557529 HNRNPUQ00839 825 aaKnown RBP eCLIP16.85■□□□□ 0.29
SHMT2-233ENST00000557529 PTCH1Q13635 1447 aa16.84■□□□□ 0.29
SHMT2-233ENST00000557529 PTPRUQ92729 1446 aa16.84■□□□□ 0.29
SHMT2-233ENST00000557529 CGNL1Q0VF96 1302 aa16.84■□□□□ 0.29
SHMT2-233ENST00000557529 NSD2O96028 1365 aa16.84■□□□□ 0.29
SHMT2-233ENST00000557529 PPP2R1AP30153 589 aa16.83■□□□□ 0.28
SHMT2-233ENST00000557529 AMOTL2Q9Y2J4 779 aa16.83■□□□□ 0.28
SHMT2-233ENST00000557529 HDGFL2Q7Z4V5 671 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-233ENST00000557529 ADGRB2O60241 1585 aa16.81■□□□□ 0.28
SHMT2-233ENST00000557529 A0A1W2PP64 1363 aa16.81■□□□□ 0.28
SHMT2-233ENST00000557529 ATP7BP35670 1465 aa16.8■□□□□ 0.28
SHMT2-233ENST00000557529 INSRP06213 1382 aa16.79■□□□□ 0.28
SHMT2-233ENST00000557529 XRN1Q8IZH2 1706 aaKnown RBP16.79■□□□□ 0.28
SHMT2-233ENST00000557529 MORC1Q86VD1 984 aa16.78■□□□□ 0.28
SHMT2-233ENST00000557529 CABP1Q9NZU7 370 aa16.78■□□□□ 0.28
SHMT2-233ENST00000557529 CD163L1Q9NR16 1453 aa16.78■□□□□ 0.28
SHMT2-233ENST00000557529 NPHP4O75161 1426 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-233ENST00000557529 ZBED9Q6R2W3 1325 aa16.77■□□□□ 0.27
SHMT2-233ENST00000557529 NUDT16Q96DE0 195 aaKnown RBP16.77■□□□□ 0.27
SHMT2-233ENST00000557529 CCDC61Q9Y6R9 512 aa16.77■□□□□ 0.27
SHMT2-233ENST00000557529 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-233ENST00000557529 PPIP5K1Q6PFW1 1433 aa16.75■□□□□ 0.27
SHMT2-233ENST00000557529 KCNA6P17658 529 aa16.73■□□□□ 0.27
SHMT2-233ENST00000557529 CPSF1Q10570 1443 aaKnown RBP16.73■□□□□ 0.27
SHMT2-233ENST00000557529 CDC42BPGQ6DT37 1551 aa16.72■□□□□ 0.27
SHMT2-233ENST00000557529 EDC4Q6P2E9 1401 aaKnown RBP16.71■□□□□ 0.27
SHMT2-233ENST00000557529 CHD2O14647 1828 aaKnown RBP16.71■□□□□ 0.27
SHMT2-233ENST00000557529 POLR3AO14802 1390 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-233ENST00000557529 PRR36Q9H6K5 1346 aa16.7■□□□□ 0.26
SHMT2-233ENST00000557529 WDR43Q15061 677 aaKnown RBP eCLIP16.7■□□□□ 0.26
SHMT2-233ENST00000557529 ZNF692Q9BU19 519 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-233ENST00000557529 NCKAP5LQ9HCH0 1330 aa16.69■□□□□ 0.26
SHMT2-233ENST00000557529 PLEKHG3A1L390 1219 aa16.69■□□□□ 0.26
SHMT2-233ENST00000557529 FYB1O15117 783 aa16.69■□□□□ 0.26
SHMT2-233ENST00000557529 GTF3C3Q9Y5Q9 886 aa16.69■□□□□ 0.26
SHMT2-233ENST00000557529 BLMP54132 1417 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-233ENST00000557529 TOPAZ1Q8N9V7 1692 aa16.68■□□□□ 0.26
SHMT2-233ENST00000557529 SCAF1Q9H7N4 1312 aaKnown RBP16.68■□□□□ 0.26
SHMT2-233ENST00000557529 ANKARQ7Z5J8 1434 aa16.68■□□□□ 0.26
SHMT2-233ENST00000557529 ANKRD26Q9UPS8 1709 aa16.68■□□□□ 0.26
SHMT2-233ENST00000557529 CFAP53Q96M91 514 aa16.66■□□□□ 0.26
SHMT2-233ENST00000557529 GGNBP2Q9H3C7 697 aa16.66■□□□□ 0.26
SHMT2-233ENST00000557529 KIF20BQ96Q89 1820 aa16.66■□□□□ 0.26
SHMT2-233ENST00000557529 KDM4FA0A1W2PPD8 638 aa16.65■□□□□ 0.26
SHMT2-233ENST00000557529 TNNT2P45379 298 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-233ENST00000557529 NWD1Q149M9 1564 aa16.65■□□□□ 0.26
SHMT2-233ENST00000557529 ITSN1Q15811 1721 aa16.65■□□□□ 0.26
SHMT2-233ENST00000557529 MON2Q7Z3U7 1717 aa16.65■□□□□ 0.26
SHMT2-233ENST00000557529 AKAP12Q02952 1782 aa16.65■□□□□ 0.26
SHMT2-233ENST00000557529 ADAMTS8Q9UP79 889 aa16.64■□□□□ 0.26
SHMT2-233ENST00000557529 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.64■□□□□ 0.25
SHMT2-233ENST00000557529 ADGRL3Q9HAR2 1447 aa16.63■□□□□ 0.25
SHMT2-233ENST00000557529 MTHFSP49914 203 aa16.63■□□□□ 0.25
SHMT2-233ENST00000557529 ACEP12821 1306 aa16.62■□□□□ 0.25
SHMT2-233ENST00000557529 FMN2Q9NZ56 1722 aa16.61■□□□□ 0.25
SHMT2-233ENST00000557529 NKTRP30414 1462 aaKnown RBP16.61■□□□□ 0.25
SHMT2-233ENST00000557529 NUTM2FA1L443 756 aa16.61■□□□□ 0.25
SHMT2-233ENST00000557529 USP6P35125 1406 aa16.6■□□□□ 0.25
SHMT2-233ENST00000557529 PDE3BQ13370 1112 aa16.59■□□□□ 0.25
SHMT2-233ENST00000557529 COG3Q96JB2 828 aa16.59■□□□□ 0.25
SHMT2-233ENST00000557529 NALCNQ8IZF0 1738 aa16.59■□□□□ 0.25
SHMT2-233ENST00000557529 SMG6Q86US8 1419 aaKnown RBP16.59■□□□□ 0.25
SHMT2-233ENST00000557529 NME9Q86XW9 330 aa16.58■□□□□ 0.24
SHMT2-233ENST00000557529 TTC21BQ7Z4L5 1316 aa16.58■□□□□ 0.24
SHMT2-233ENST00000557529 NRKQ7Z2Y5 1582 aa16.57■□□□□ 0.24
SHMT2-233ENST00000557529 NGEFQ8N5V2 710 aa16.57■□□□□ 0.24
SHMT2-233ENST00000557529 NGDNQ8NEJ9 315 aaKnown RBP16.57■□□□□ 0.24
SHMT2-233ENST00000557529 TTC21AQ8NDW8 1320 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms