RNA–Protein interactions for RNA: ENST00000555906.5

PRKCH-219, Transcript of protein kinase C eta, human

TSL 3

Gene PRKCH, Length 459 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-219	ENST00000555906	COL22A1	Q8NFW1	1626 aa	Predicted RBP	29.32	■■■□□ 2.28
PRKCH-219	ENST00000555906	NRXN1	Q9ULB1	1477 aa		29.32	■■■□□ 2.28
PRKCH-219	ENST00000555906	SOS2	Q07890	1332 aa	Predicted RBP	29.31	■■■□□ 2.28
PRKCH-219	ENST00000555906	ABCC11	Q96J66	1382 aa		29.3	■■■□□ 2.28
PRKCH-219	ENST00000555906	RAB3GAP2	Q9H2M9	1393 aa		29.3	■■■□□ 2.28
PRKCH-219	ENST00000555906	ORAI2	Q96SN7	254 aa		29.3	■■■□□ 2.28
PRKCH-219	ENST00000555906	FMN2	Q9NZ56	1722 aa		29.3	■■■□□ 2.28
PRKCH-219	ENST00000555906	CDK12	Q9NYV4	1490 aa	Predicted RBP	29.29	■■■□□ 2.28
PRKCH-219	ENST00000555906	AFF2	P51816	1311 aa		29.27	■■■□□ 2.28
PRKCH-219	ENST00000555906	YTHDC2	Q9H6S0	1430 aa	Known RBP	29.27	■■■□□ 2.28
PRKCH-219	ENST00000555906	KIF1A	Q12756	1690 aa		29.25	■■■□□ 2.27
PRKCH-219	ENST00000555906	PXDN	Q92626	1479 aa		29.24	■■■□□ 2.27
PRKCH-219	ENST00000555906	STK26	Q9P289	416 aa		29.23	■■■□□ 2.27
PRKCH-219	ENST00000555906	PLEKHH1	Q9ULM0	1364 aa		29.22	■■■□□ 2.27
PRKCH-219	ENST00000555906	NPHP3	Q7Z494	1330 aa		29.21	■■■□□ 2.27
PRKCH-219	ENST00000555906	TMEM132E	Q6IEE7	984 aa		29.21	■■■□□ 2.27
PRKCH-219	ENST00000555906	RXRB	P28702	533 aa		29.2	■■■□□ 2.26
PRKCH-219	ENST00000555906	WAPL	Q7Z5K2	1190 aa		29.2	■■■□□ 2.26
PRKCH-219	ENST00000555906	C8orf37	Q96NL8	207 aa		29.2	■■■□□ 2.26
PRKCH-219	ENST00000555906	MARF1	Q9Y4F3	1742 aa	Known RBP	29.2	■■■□□ 2.26
PRKCH-219	ENST00000555906	ESCO1	Q5FWF5	840 aa		29.18	■■■□□ 2.26
PRKCH-219	ENST00000555906	C14orf93	Q9H972	538 aa	Known RBP	29.17	■■■□□ 2.26
PRKCH-219	ENST00000555906	DLC1	Q96QB1	1528 aa		29.15	■■■□□ 2.26
PRKCH-219	ENST00000555906	SIRT1	Q96EB6	747 aa		29.15	■■■□□ 2.26
PRKCH-219	ENST00000555906	DHX57	Q6P158	1386 aa	Known RBP	29.13	■■■□□ 2.25
PRKCH-219	ENST00000555906	RGPD8	O14715	1765 aa	Predicted RBP	29.13	■■■□□ 2.25
PRKCH-219	ENST00000555906	RGS12	O14924	1447 aa		29.13	■■■□□ 2.25
PRKCH-219	ENST00000555906	ADAMTS2	O95450	1211 aa		29.12	■■■□□ 2.25
PRKCH-219	ENST00000555906	ADGRB1	O14514	1584 aa		29.12	■■■□□ 2.25
PRKCH-219	ENST00000555906	ADGRB2	O60241	1585 aa		29.12	■■■□□ 2.25
PRKCH-219	ENST00000555906	CFAP70	Q5T0N1	1121 aa		29.1	■■■□□ 2.25
PRKCH-219	ENST00000555906	NGLY1	Q96IV0	654 aa		29.09	■■■□□ 2.25
PRKCH-219	ENST00000555906	FOXO3	O43524	673 aa		29.08	■■■□□ 2.25
PRKCH-219	ENST00000555906	RBM6	P78332	1123 aa	Known RBP	29.08	■■■□□ 2.25
PRKCH-219	ENST00000555906	NUTM2F	A1L443	756 aa		29.07	■■■□□ 2.24
PRKCH-219	ENST00000555906	QTRT2	Q9H974	415 aa	Known RBP	29.07	■■■□□ 2.24
PRKCH-219	ENST00000555906	UPF1	Q92900	1129 aa	Known RBP eCLIP	29.06	■■■□□ 2.24
PRKCH-219	ENST00000555906	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	29.06	■■■□□ 2.24
PRKCH-219	ENST00000555906	XPC	Q01831	940 aa	Predicted RBP	29.04	■■■□□ 2.24
PRKCH-219	ENST00000555906	USP32	Q8NFA0	1604 aa		29.04	■■■□□ 2.24
PRKCH-219	ENST00000555906	HRC	P23327	699 aa		29.03	■■■□□ 2.24
PRKCH-219	ENST00000555906	FNBP4	Q8N3X1	1017 aa	Predicted RBP	29.03	■■■□□ 2.24
PRKCH-219	ENST00000555906	ATRN	O75882	1429 aa		29.03	■■■□□ 2.24
PRKCH-219	ENST00000555906	USP21	Q9UK80	565 aa		29.02	■■■□□ 2.24
PRKCH-219	ENST00000555906	PRAM1	Q96QH2	718 aa		29.01	■■■□□ 2.23
PRKCH-219	ENST00000555906	ABCA3	Q99758	1704 aa		29	■■■□□ 2.23
PRKCH-219	ENST00000555906	ANKAR	Q7Z5J8	1434 aa		29	■■■□□ 2.23
PRKCH-219	ENST00000555906	SPATA31A3	Q5VYP0	1347 aa		28.99	■■■□□ 2.23
PRKCH-219	ENST00000555906	TRPC5	Q9UL62	973 aa	Predicted RBP	28.99	■■■□□ 2.23
PRKCH-219	ENST00000555906	TNS3	Q68CZ2	1445 aa		28.98	■■■□□ 2.23
PRKCH-219	ENST00000555906	ARHGEF28	Q8N1W1	1705 aa	Known RBP	28.97	■■■□□ 2.23
PRKCH-219	ENST00000555906	BCL9L	Q86UU0	1499 aa		28.97	■■■□□ 2.23
PRKCH-219	ENST00000555906	STAC3	Q96MF2	364 aa		28.95	■■■□□ 2.22
PRKCH-219	ENST00000555906	PHF8	Q9UPP1	1060 aa		28.95	■■■□□ 2.22
PRKCH-219	ENST00000555906	SAFB2	Q14151	953 aa	Known RBP eCLIP	28.94	■■■□□ 2.22
PRKCH-219	ENST00000555906	POGK	Q9P215	609 aa		28.93	■■■□□ 2.22
PRKCH-219	ENST00000555906	TULP4	Q9NRJ4	1543 aa		28.93	■■■□□ 2.22
PRKCH-219	ENST00000555906	TRPM3	Q9HCF6	1732 aa	Predicted RBP	28.92	■■■□□ 2.22
PRKCH-219	ENST00000555906	SBNO1	A3KN83	1393 aa		28.92	■■■□□ 2.22
PRKCH-219	ENST00000555906	EIF3A	Q14152	1382 aa	Known RBP	28.92	■■■□□ 2.22
PRKCH-219	ENST00000555906	KRT28	Q7Z3Y7	464 aa		28.92	■■■□□ 2.22
PRKCH-219	ENST00000555906	DCAF11	Q8TEB1	546 aa		28.92	■■■□□ 2.22
PRKCH-219	ENST00000555906	SLIT2	O94813	1529 aa		28.91	■■■□□ 2.22
PRKCH-219	ENST00000555906	PLCH1	Q4KWH8	1693 aa		28.9	■■■□□ 2.22
PRKCH-219	ENST00000555906	NWD2	Q9ULI1	1742 aa		28.89	■■■□□ 2.22
PRKCH-219	ENST00000555906	KIAA1210	Q9ULL0	1709 aa		28.89	■■■□□ 2.22
PRKCH-219	ENST00000555906	ITSN1	Q15811	1721 aa		28.89	■■■□□ 2.21
PRKCH-219	ENST00000555906	ATAD2	Q6PL18	1390 aa		28.88	■■■□□ 2.21
PRKCH-219	ENST00000555906	PSME1	Q06323	249 aa		28.88	■■■□□ 2.21
PRKCH-219	ENST00000555906	TRAK1	Q9UPV9	953 aa		28.88	■■■□□ 2.21
PRKCH-219	ENST00000555906	KDM2A	Q9Y2K7	1162 aa		28.88	■■■□□ 2.21
PRKCH-219	ENST00000555906	ARHGEF10	O15013	1369 aa		28.88	■■■□□ 2.21
PRKCH-219	ENST00000555906	ALS2	Q96Q42	1657 aa		28.87	■■■□□ 2.21
PRKCH-219	ENST00000555906	EP400	Q96L91	3159 aa		28.86	■■■□□ 2.21
PRKCH-219	ENST00000555906	GLI3	P10071	1580 aa		28.85	■■■□□ 2.21
PRKCH-219	ENST00000555906	MINK1	Q8N4C8	1332 aa	Predicted RBP	28.82	■■■□□ 2.2
PRKCH-219	ENST00000555906	RALGAPB	Q86X10	1494 aa		28.81	■■■□□ 2.2
PRKCH-219	ENST00000555906	HIRIP3	Q9BW71	556 aa	Predicted RBP	28.81	■■■□□ 2.2
PRKCH-219	ENST00000555906	UNC5CL	Q8IV45	518 aa		28.8	■■■□□ 2.2
PRKCH-219	ENST00000555906	GJD4	Q96KN9	370 aa	Predicted RBP	28.8	■■■□□ 2.2
PRKCH-219	ENST00000555906	CRYBG1	Q9Y4K1	1723 aa		28.8	■■■□□ 2.2
PRKCH-219	ENST00000555906	PRR36	Q9H6K5	1346 aa		28.79	■■■□□ 2.2
PRKCH-219	ENST00000555906	PMFBP1	Q8TBY8	1022 aa		28.79	■■■□□ 2.2
PRKCH-219	ENST00000555906	ATP7B	P35670	1465 aa		28.78	■■■□□ 2.2
PRKCH-219	ENST00000555906	WASL	O00401	505 aa	Predicted RBP	28.78	■■■□□ 2.2
PRKCH-219	ENST00000555906	HAP1	P54257	671 aa	Predicted RBP	28.78	■■■□□ 2.2
PRKCH-219	ENST00000555906	TOPAZ1	Q8N9V7	1692 aa		28.77	■■■□□ 2.2
PRKCH-219	ENST00000555906	NRAP	Q86VF7	1730 aa		28.77	■■■□□ 2.2
PRKCH-219	ENST00000555906	GPRASP1	Q5JY77	1395 aa		28.75	■■■□□ 2.19
PRKCH-219	ENST00000555906	BRWD3	Q6RI45	1802 aa		28.75	■■■□□ 2.19
PRKCH-219	ENST00000555906	CABLES1	Q8TDN4	633 aa		28.74	■■■□□ 2.19
PRKCH-219	ENST00000555906	LMOD2	Q6P5Q4	547 aa		28.73	■■■□□ 2.19
PRKCH-219	ENST00000555906	COL14A1	Q05707	1796 aa	Known RBP	28.73	■■■□□ 2.19
PRKCH-219	ENST00000555906	VPS72	Q15906	364 aa		28.68	■■■□□ 2.18
PRKCH-219	ENST00000555906	PHRF1	Q9P1Y6	1649 aa	Known RBP	28.67	■■■□□ 2.18
PRKCH-219	ENST00000555906	PLEKHG5	O94827	1062 aa		28.66	■■■□□ 2.18
PRKCH-219	ENST00000555906	NGDN	Q8NEJ9	315 aa	Known RBP	28.65	■■■□□ 2.18
PRKCH-219	ENST00000555906	QRICH2	Q9H0J4	1663 aa		28.63	■■■□□ 2.17
PRKCH-219	ENST00000555906	CCDC125	Q86Z20	511 aa		28.62	■■■□□ 2.17
PRKCH-219	ENST00000555906	NUDT16	Q96DE0	195 aa	Known RBP	28.62	■■■□□ 2.17

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms