RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 PTPRUQ92729 1446 aa15.58■□□□□ 0.08
SHMT2-220ENST00000555634 EVC2Q86UK5 1308 aa15.57■□□□□ 0.08
SHMT2-220ENST00000555634 KCNA6P17658 529 aa15.56■□□□□ 0.08
SHMT2-220ENST00000555634 HIRIP3Q9BW71 556 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-220ENST00000555634 ROBO2Q9HCK4 1378 aa15.56■□□□□ 0.08
SHMT2-220ENST00000555634 MYOM1P52179 1685 aa15.56■□□□□ 0.08
SHMT2-220ENST00000555634 FMN2Q9NZ56 1722 aa15.56■□□□□ 0.08
SHMT2-220ENST00000555634 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-220ENST00000555634 TULP4Q9NRJ4 1543 aa15.55■□□□□ 0.08
SHMT2-220ENST00000555634 SAFB2Q14151 953 aaKnown RBP eCLIP15.55■□□□□ 0.08
SHMT2-220ENST00000555634 C14orf37Q86TY3 774 aa15.55■□□□□ 0.08
SHMT2-220ENST00000555634 POLR3GLQ9BT43 218 aa15.54■□□□□ 0.08
SHMT2-220ENST00000555634 ADGRL3Q9HAR2 1447 aa15.53■□□□□ 0.08
SHMT2-220ENST00000555634 MINK1Q8N4C8 1332 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-220ENST00000555634 TOPAZ1Q8N9V7 1692 aa15.53■□□□□ 0.08
SHMT2-220ENST00000555634 NCOA3Q9Y6Q9 1424 aa15.52■□□□□ 0.08
SHMT2-220ENST00000555634 XIRP1Q702N8 1843 aaKnown RBP15.52■□□□□ 0.08
SHMT2-220ENST00000555634 CCDC7Q96M83 1385 aa15.52■□□□□ 0.08
SHMT2-220ENST00000555634 ATAD2Q6PL18 1390 aa15.51■□□□□ 0.07
SHMT2-220ENST00000555634 DISP3Q9P2K9 1392 aa15.51■□□□□ 0.07
SHMT2-220ENST00000555634 NINLQ9Y2I6 1382 aa15.51■□□□□ 0.07
SHMT2-220ENST00000555634 SRPK2P78362 688 aaKnown RBP15.51■□□□□ 0.07
SHMT2-220ENST00000555634 TESK2Q96S53 571 aa15.51■□□□□ 0.07
SHMT2-220ENST00000555634 PLEKHH1Q9ULM0 1364 aa15.5■□□□□ 0.07
SHMT2-220ENST00000555634 PROSER2Q86WR7 435 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-220ENST00000555634 DCCP43146 1447 aa15.5■□□□□ 0.07
SHMT2-220ENST00000555634 KIF7Q2M1P5 1343 aa15.49■□□□□ 0.07
SHMT2-220ENST00000555634 KIF1AQ12756 1690 aa15.49■□□□□ 0.07
SHMT2-220ENST00000555634 WAPLQ7Z5K2 1190 aa15.49■□□□□ 0.07
SHMT2-220ENST00000555634 RGPD8O14715 1765 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-220ENST00000555634 MSH6P52701 1360 aa15.49■□□□□ 0.07
SHMT2-220ENST00000555634 ANKARQ7Z5J8 1434 aa15.47■□□□□ 0.07
SHMT2-220ENST00000555634 PUS7Q96PZ0 661 aaKnown RBP15.47■□□□□ 0.07
SHMT2-220ENST00000555634 AKAP12Q02952 1782 aa15.47■□□□□ 0.07
SHMT2-220ENST00000555634 WASHC2AQ641Q2 1341 aa15.46■□□□□ 0.07
SHMT2-220ENST00000555634 ZNF335Q9H4Z2 1342 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-220ENST00000555634 LRRC7Q96NW7 1537 aa15.45■□□□□ 0.06
SHMT2-220ENST00000555634 WASLO00401 505 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-220ENST00000555634 TMEM94Q12767 1356 aa15.45■□□□□ 0.06
SHMT2-220ENST00000555634 KIF20BQ96Q89 1820 aa15.45■□□□□ 0.06
SHMT2-220ENST00000555634 USP32Q8NFA0 1604 aa15.44■□□□□ 0.06
SHMT2-220ENST00000555634 MON2Q7Z3U7 1717 aa15.44■□□□□ 0.06
SHMT2-220ENST00000555634 ATP7BP35670 1465 aa15.44■□□□□ 0.06
SHMT2-220ENST00000555634 ATF3P18847 181 aa15.43■□□□□ 0.06
SHMT2-220ENST00000555634 CDK19Q9BWU1 502 aa15.43■□□□□ 0.06
SHMT2-220ENST00000555634 PPIP5K1Q6PFW1 1433 aa15.42■□□□□ 0.06
SHMT2-220ENST00000555634 TMC1Q8TDI8 760 aa15.41■□□□□ 0.06
SHMT2-220ENST00000555634 CABP2Q9NPB3 220 aa15.41■□□□□ 0.06
SHMT2-220ENST00000555634 ANKRD26Q9UPS8 1709 aa15.4■□□□□ 0.06
SHMT2-220ENST00000555634 LTBP4Q8N2S1 1624 aa15.4■□□□□ 0.06
SHMT2-220ENST00000555634 CADPS2Q86UW7 1296 aa15.4■□□□□ 0.06
SHMT2-220ENST00000555634 C19orf44Q9H6X5 657 aa15.4■□□□□ 0.06
SHMT2-220ENST00000555634 TERF2IPQ9NYB0 399 aa15.4■□□□□ 0.06
SHMT2-220ENST00000555634 HDGFL2Q7Z4V5 671 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-220ENST00000555634 IQSEC2Q5JU85 1478 aa15.39■□□□□ 0.05
SHMT2-220ENST00000555634 DDX10Q13206 875 aaKnown RBP15.38■□□□□ 0.05
SHMT2-220ENST00000555634 ANKRD36BQ8N2N9 1353 aa15.37■□□□□ 0.05
SHMT2-220ENST00000555634 C11orf95C9JLR9 678 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-220ENST00000555634 CCDC61Q9Y6R9 512 aa15.37■□□□□ 0.05
SHMT2-220ENST00000555634 NRKQ7Z2Y5 1582 aa15.36■□□□□ 0.05
SHMT2-220ENST00000555634 NUDT16Q96DE0 195 aaKnown RBP15.36■□□□□ 0.05
SHMT2-220ENST00000555634 DIEXFQ68CQ4 756 aaKnown RBP15.35■□□□□ 0.05
SHMT2-220ENST00000555634 RBM33Q96EV2 1170 aaKnown RBP15.35■□□□□ 0.05
SHMT2-220ENST00000555634 MST1RQ04912 1400 aa15.34■□□□□ 0.05
SHMT2-220ENST00000555634 KNSTRNQ9Y448 316 aa15.33■□□□□ 0.04
SHMT2-220ENST00000555634 C1orf167Q5SNV9 1468 aa15.33■□□□□ 0.04
SHMT2-220ENST00000555634 NUTM2FA1L443 756 aa15.32■□□□□ 0.04
SHMT2-220ENST00000555634 A0A1W2PP64 1363 aa15.32■□□□□ 0.04
SHMT2-220ENST00000555634 KTN1Q86UP2 1357 aaKnown RBP15.32■□□□□ 0.04
SHMT2-220ENST00000555634 EDC4Q6P2E9 1401 aaKnown RBP15.32■□□□□ 0.04
SHMT2-220ENST00000555634 NSD3Q9BZ95 1437 aa15.32■□□□□ 0.04
SHMT2-220ENST00000555634 NGDNQ8NEJ9 315 aaKnown RBP15.31■□□□□ 0.04
SHMT2-220ENST00000555634 ROBO1Q9Y6N7 1651 aa15.31■□□□□ 0.04
SHMT2-220ENST00000555634 ANP32CO43423 234 aa15.3■□□□□ 0.04
SHMT2-220ENST00000555634 NSD2O96028 1365 aa15.3■□□□□ 0.04
SHMT2-220ENST00000555634 CGNL1Q0VF96 1302 aa15.3■□□□□ 0.04
SHMT2-220ENST00000555634 ESCO1Q5FWF5 840 aa15.3■□□□□ 0.04
SHMT2-220ENST00000555634 NHSL1Q5SYE7 1610 aa15.3■□□□□ 0.04
SHMT2-220ENST00000555634 ZNF692Q9BU19 519 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-220ENST00000555634 PRR36Q9H6K5 1346 aa15.3■□□□□ 0.04
SHMT2-220ENST00000555634 PANK3Q9H999 370 aa15.3■□□□□ 0.04
SHMT2-220ENST00000555634 CABP1Q9NZU7 370 aa15.3■□□□□ 0.04
SHMT2-220ENST00000555634 BRD4O60885 1362 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-220ENST00000555634 SLC12A5Q9H2X9 1139 aa15.29■□□□□ 0.04
SHMT2-220ENST00000555634 PHF8Q9UPP1 1060 aa15.29■□□□□ 0.04
SHMT2-220ENST00000555634 USP6P35125 1406 aa15.28■□□□□ 0.04
SHMT2-220ENST00000555634 POLR3AO14802 1390 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-220ENST00000555634 CD163L1Q9NR16 1453 aa15.27■□□□□ 0.04
SHMT2-220ENST00000555634 CPSF1Q10570 1443 aaKnown RBP15.27■□□□□ 0.04
SHMT2-220ENST00000555634 PLEKHG3A1L390 1219 aa15.27■□□□□ 0.04
SHMT2-220ENST00000555634 USP54Q70EL1 1684 aa15.27■□□□□ 0.03
SHMT2-220ENST00000555634 TRPM3Q9HCF6 1732 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-220ENST00000555634 ACEP12821 1306 aa15.26■□□□□ 0.03
SHMT2-220ENST00000555634 NPHP3Q7Z494 1330 aa15.25■□□□□ 0.03
SHMT2-220ENST00000555634 TOM1O60784 492 aa15.25■□□□□ 0.03
SHMT2-220ENST00000555634 PHLPP1O60346 1717 aa15.25■□□□□ 0.03
SHMT2-220ENST00000555634 PIK3C2AO00443 1686 aa15.25■□□□□ 0.03
SHMT2-220ENST00000555634 NPC1L1Q9UHC9 1359 aa15.24■□□□□ 0.03
SHMT2-220ENST00000555634 TTC21AQ8NDW8 1320 aa15.24■□□□□ 0.03
SHMT2-220ENST00000555634 PMFBP1Q8TBY8 1022 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms