RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 RGS17Q9UGC6 210 aaPredicted RBP17.33■□□□□ 0.36
VRK1-204ENST00000555351 DLC1Q96QB1 1528 aa17.32■□□□□ 0.36
VRK1-204ENST00000555351 STK26Q9P289 416 aa17.32■□□□□ 0.36
VRK1-204ENST00000555351 CFAP70Q5T0N1 1121 aa17.31■□□□□ 0.36
VRK1-204ENST00000555351 ADGRB1O14514 1584 aa17.3■□□□□ 0.36
VRK1-204ENST00000555351 LRP6O75581 1613 aa17.29■□□□□ 0.36
VRK1-204ENST00000555351 SOS2Q07890 1332 aaPredicted RBP17.29■□□□□ 0.36
VRK1-204ENST00000555351 WAPLQ7Z5K2 1190 aa17.29■□□□□ 0.36
VRK1-204ENST00000555351 FMN2Q9NZ56 1722 aa17.28■□□□□ 0.36
VRK1-204ENST00000555351 DCAF11Q8TEB1 546 aa17.28■□□□□ 0.36
VRK1-204ENST00000555351 ORAI2Q96SN7 254 aa17.28■□□□□ 0.36
VRK1-204ENST00000555351 PLEKHH1Q9ULM0 1364 aa17.28■□□□□ 0.36
VRK1-204ENST00000555351 PNPLA6Q8IY17 1366 aa17.27■□□□□ 0.35
VRK1-204ENST00000555351 NPHP3Q7Z494 1330 aa17.26■□□□□ 0.35
VRK1-204ENST00000555351 KIF1AQ12756 1690 aa17.25■□□□□ 0.35
VRK1-204ENST00000555351 ADGRB2O60241 1585 aa17.24■□□□□ 0.35
VRK1-204ENST00000555351 ESCO1Q5FWF5 840 aa17.24■□□□□ 0.35
VRK1-204ENST00000555351 COL22A1Q8NFW1 1626 aaPredicted RBP17.23■□□□□ 0.35
VRK1-204ENST00000555351 MEX3CQ5U5Q3 659 aaKnown RBP17.23■□□□□ 0.35
VRK1-204ENST00000555351 ZNF772Q68DY9 489 aaPredicted RBP17.23■□□□□ 0.35
VRK1-204ENST00000555351 POTEAQ6S8J7 498 aa17.23■□□□□ 0.35
VRK1-204ENST00000555351 DDX17Q92841 729 aaKnown RBP17.23■□□□□ 0.35
VRK1-204ENST00000555351 KDM2AQ9Y2K7 1162 aa17.23■□□□□ 0.35
VRK1-204ENST00000555351 KIAA1210Q9ULL0 1709 aa17.23■□□□□ 0.35
VRK1-204ENST00000555351 PXDNQ92626 1479 aa17.23■□□□□ 0.35
VRK1-204ENST00000555351 PRAM1Q96QH2 718 aa17.22■□□□□ 0.35
VRK1-204ENST00000555351 ANKARQ7Z5J8 1434 aa17.21■□□□□ 0.34
VRK1-204ENST00000555351 POGKQ9P215 609 aa17.2■□□□□ 0.34
VRK1-204ENST00000555351 EIF3AQ14152 1382 aaKnown RBP17.19■□□□□ 0.34
VRK1-204ENST00000555351 NUTM2BA6NNL0 878 aaPredicted RBP17.18■□□□□ 0.34
VRK1-204ENST00000555351 NUTM2EB1AL46 878 aaPredicted RBP17.18■□□□□ 0.34
VRK1-204ENST00000555351 NUTM2AQ8IVF1 878 aaPredicted RBP17.18■□□□□ 0.34
VRK1-204ENST00000555351 FOXO3O43524 673 aa17.17■□□□□ 0.34
VRK1-204ENST00000555351 TRAK1Q9UPV9 953 aa17.17■□□□□ 0.34
VRK1-204ENST00000555351 ARHGEF28Q8N1W1 1705 aaKnown RBP17.16■□□□□ 0.34
VRK1-204ENST00000555351 PHF8Q9UPP1 1060 aa17.15■□□□□ 0.34
VRK1-204ENST00000555351 CDK12Q9NYV4 1490 aaPredicted RBP17.15■□□□□ 0.34
VRK1-204ENST00000555351 RGPD8O14715 1765 aaPredicted RBP17.15■□□□□ 0.34
VRK1-204ENST00000555351 USP32Q8NFA0 1604 aa17.14■□□□□ 0.33
VRK1-204ENST00000555351 NUTM2FA1L443 756 aa17.14■□□□□ 0.33
VRK1-204ENST00000555351 AFF2P51816 1311 aa17.14■□□□□ 0.33
VRK1-204ENST00000555351 TULP4Q9NRJ4 1543 aa17.13■□□□□ 0.33
VRK1-204ENST00000555351 PSME1Q06323 249 aa17.13■□□□□ 0.33
VRK1-204ENST00000555351 SAFB2Q14151 953 aaKnown RBP eCLIP17.13■□□□□ 0.33
VRK1-204ENST00000555351 SPATA31A3Q5VYP0 1347 aa17.13■□□□□ 0.33
VRK1-204ENST00000555351 SBNO1A3KN83 1393 aa17.12■□□□□ 0.33
VRK1-204ENST00000555351 MARF1Q9Y4F3 1742 aaKnown RBP17.11■□□□□ 0.33
VRK1-204ENST00000555351 WASLO00401 505 aaPredicted RBP17.11■□□□□ 0.33
VRK1-204ENST00000555351 KRT28Q7Z3Y7 464 aa17.11■□□□□ 0.33
VRK1-204ENST00000555351 C8orf37Q96NL8 207 aa17.11■□□□□ 0.33
VRK1-204ENST00000555351 RXRBP28702 533 aa17.1■□□□□ 0.33
VRK1-204ENST00000555351 TNS3Q68CZ2 1445 aa17.1■□□□□ 0.33
VRK1-204ENST00000555351 FNBP4Q8N3X1 1017 aaPredicted RBP17.09■□□□□ 0.33
VRK1-204ENST00000555351 NGLY1Q96IV0 654 aa17.09■□□□□ 0.33
VRK1-204ENST00000555351 MINK1Q8N4C8 1332 aaPredicted RBP17.09■□□□□ 0.33
VRK1-204ENST00000555351 ITSN1Q15811 1721 aa17.08■□□□□ 0.32
VRK1-204ENST00000555351 ARHGEF10O15013 1369 aa17.08■□□□□ 0.32
VRK1-204ENST00000555351 ADAMTS2O95450 1211 aa17.08■□□□□ 0.32
VRK1-204ENST00000555351 XPCQ01831 940 aaPredicted RBP17.08■□□□□ 0.32
VRK1-204ENST00000555351 L3MBTL2Q969R5 705 aa17.08■□□□□ 0.32
VRK1-204ENST00000555351 HIRIP3Q9BW71 556 aaPredicted RBP17.07■□□□□ 0.32
VRK1-204ENST00000555351 RBM6P78332 1123 aaKnown RBP17.06■□□□□ 0.32
VRK1-204ENST00000555351 TRIM26Q12899 539 aaPredicted RBP17.06■□□□□ 0.32
VRK1-204ENST00000555351 QTRT2Q9H974 415 aaKnown RBP17.06■□□□□ 0.32
VRK1-204ENST00000555351 PRR36Q9H6K5 1346 aa17.05■□□□□ 0.32
VRK1-204ENST00000555351 NBPF1Q3BBV0 1214 aa17.05■□□□□ 0.32
VRK1-204ENST00000555351 ATP7BP35670 1465 aa17.05■□□□□ 0.32
VRK1-204ENST00000555351 TRPM3Q9HCF6 1732 aaPredicted RBP17.04■□□□□ 0.32
VRK1-204ENST00000555351 GPRASP1Q5JY77 1395 aa17.04■□□□□ 0.32
VRK1-204ENST00000555351 TRPM1Q7Z4N2 1603 aa17.04■□□□□ 0.32
VRK1-204ENST00000555351 SIN3AQ96ST3 1273 aa17.03■□□□□ 0.32
VRK1-204ENST00000555351 USP21Q9UK80 565 aa17.03■□□□□ 0.32
VRK1-204ENST00000555351 TRPC5Q9UL62 973 aaPredicted RBP17.03■□□□□ 0.32
VRK1-204ENST00000555351 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.03■□□□□ 0.32
VRK1-204ENST00000555351 TOPAZ1Q8N9V7 1692 aa17.02■□□□□ 0.32
VRK1-204ENST00000555351 ALS2Q96Q42 1657 aa17.02■□□□□ 0.32
VRK1-204ENST00000555351 PMFBP1Q8TBY8 1022 aa17.02■□□□□ 0.32
VRK1-204ENST00000555351 NUDT16Q96DE0 195 aaKnown RBP17.02■□□□□ 0.32
VRK1-204ENST00000555351 ATRNO75882 1429 aa17.02■□□□□ 0.31
VRK1-204ENST00000555351 CENPJQ9HC77 1338 aaPredicted RBP17.01■□□□□ 0.31
VRK1-204ENST00000555351 BCL9LQ86UU0 1499 aa17.01■□□□□ 0.31
VRK1-204ENST00000555351 ABCA3Q99758 1704 aa17.01■□□□□ 0.31
VRK1-204ENST00000555351 SLIT2O94813 1529 aa17.01■□□□□ 0.31
VRK1-204ENST00000555351 CDK19Q9BWU1 502 aa17■□□□□ 0.31
VRK1-204ENST00000555351 POLR3AO14802 1390 aaPredicted RBP17■□□□□ 0.31
VRK1-204ENST00000555351 NEUROD1Q13562 356 aa16.99■□□□□ 0.31
VRK1-204ENST00000555351 NGDNQ8NEJ9 315 aaKnown RBP16.99■□□□□ 0.31
VRK1-204ENST00000555351 CCDC61Q9Y6R9 512 aa16.99■□□□□ 0.31
VRK1-204ENST00000555351 NWD2Q9ULI1 1742 aa16.99■□□□□ 0.31
VRK1-204ENST00000555351 QRICH2Q9H0J4 1663 aa16.98■□□□□ 0.31
VRK1-204ENST00000555351 RGS12O14924 1447 aa16.98■□□□□ 0.31
VRK1-204ENST00000555351 PLEKHG3A1L390 1219 aa16.98■□□□□ 0.31
VRK1-204ENST00000555351 HAP1P54257 671 aaPredicted RBP16.96■□□□□ 0.31
VRK1-204ENST00000555351 UNC5CLQ8IV45 518 aa16.96■□□□□ 0.31
VRK1-204ENST00000555351 BRD4O60885 1362 aaPredicted RBP16.96■□□□□ 0.31
VRK1-204ENST00000555351 ROCK2O75116 1388 aaKnown RBP16.96■□□□□ 0.31
VRK1-204ENST00000555351 LMOD2Q6P5Q4 547 aa16.95■□□□□ 0.3
VRK1-204ENST00000555351 CRYBG1Q9Y4K1 1723 aa16.95■□□□□ 0.3
VRK1-204ENST00000555351 CABLES1Q8TDN4 633 aa16.93■□□□□ 0.3
VRK1-204ENST00000555351 UPF1Q92900 1129 aaKnown RBP eCLIP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms