RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 SPHKAPQ2M3C7 1700 aa14.9□□□□□ -0.02
SCFD1-215ENST00000555259 DEFB132Q7Z7B7 95 aa14.87□□□□□ -0.03
SCFD1-215ENST00000555259 NPHP3Q7Z494 1330 aa14.87□□□□□ -0.03
SCFD1-215ENST00000555259 MARF1Q9Y4F3 1742 aaKnown RBP14.87□□□□□ -0.03
SCFD1-215ENST00000555259 LRP5O75197 1615 aa14.86□□□□□ -0.03
SCFD1-215ENST00000555259 PRAG1Q86YV5 1406 aa14.86□□□□□ -0.03
SCFD1-215ENST00000555259 PXDNQ92626 1479 aa14.86□□□□□ -0.03
SCFD1-215ENST00000555259 RALGAPBQ86X10 1494 aa14.86□□□□□ -0.03
SCFD1-215ENST00000555259 GLI3P10071 1580 aa14.85□□□□□ -0.03
SCFD1-215ENST00000555259 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.84□□□□□ -0.03
SCFD1-215ENST00000555259 CLTCL1P53675 1640 aa14.84□□□□□ -0.03
SCFD1-215ENST00000555259 HFM1A2PYH4 1435 aa14.84□□□□□ -0.03
SCFD1-215ENST00000555259 ESCO1Q5FWF5 840 aa14.84□□□□□ -0.03
SCFD1-215ENST00000555259 UNC5CLQ8IV45 518 aa14.84□□□□□ -0.03
SCFD1-215ENST00000555259 XPCQ01831 940 aaPredicted RBP14.83□□□□□ -0.04
SCFD1-215ENST00000555259 SLIT2O94813 1529 aa14.83□□□□□ -0.04
SCFD1-215ENST00000555259 FOXO3O43524 673 aa14.82□□□□□ -0.04
SCFD1-215ENST00000555259 SF3B2Q13435 895 aaKnown RBP14.82□□□□□ -0.04
SCFD1-215ENST00000555259 CDC42BPGQ6DT37 1551 aa14.81□□□□□ -0.04
SCFD1-215ENST00000555259 BRWD3Q6RI45 1802 aa14.81□□□□□ -0.04
SCFD1-215ENST00000555259 VGFO15240 615 aaPredicted RBP14.81□□□□□ -0.04
SCFD1-215ENST00000555259 LRPPRCP42704 1394 aaKnown RBP14.8□□□□□ -0.04
SCFD1-215ENST00000555259 SEPT12Q8IYM1 358 aa14.79□□□□□ -0.04
SCFD1-215ENST00000555259 KIF1BO60333 1816 aa14.78□□□□□ -0.04
SCFD1-215ENST00000555259 PSDA5PKW4 1024 aaPredicted RBP14.77□□□□□ -0.04
SCFD1-215ENST00000555259 ITGAEP38570 1179 aa14.77□□□□□ -0.04
SCFD1-215ENST00000555259 HRCP23327 699 aa14.77□□□□□ -0.05
SCFD1-215ENST00000555259 SPATA31A3Q5VYP0 1347 aa14.76□□□□□ -0.05
SCFD1-215ENST00000555259 USP32Q8NFA0 1604 aa14.76□□□□□ -0.05
SCFD1-215ENST00000555259 NAIPQ13075 1403 aa14.75□□□□□ -0.05
SCFD1-215ENST00000555259 NUTM2FA1L443 756 aa14.75□□□□□ -0.05
SCFD1-215ENST00000555259 ONECUT3O60422 494 aaPredicted RBP14.75□□□□□ -0.05
SCFD1-215ENST00000555259 VPS72Q15906 364 aa14.75□□□□□ -0.05
SCFD1-215ENST00000555259 KRT27Q7Z3Y8 459 aa14.75□□□□□ -0.05
SCFD1-215ENST00000555259 BAG6P46379 1132 aa14.73□□□□□ -0.05
SCFD1-215ENST00000555259 RPGRIP1LQ68CZ1 1315 aa14.73□□□□□ -0.05
SCFD1-215ENST00000555259 CCDC144AA2RUR9 1427 aa14.73□□□□□ -0.05
SCFD1-215ENST00000555259 CCDC9Q9Y3X0 531 aaKnown RBP14.72□□□□□ -0.05
SCFD1-215ENST00000555259 WAPLQ7Z5K2 1190 aa14.71□□□□□ -0.05
SCFD1-215ENST00000555259 HAP1P54257 671 aaPredicted RBP14.7□□□□□ -0.06
SCFD1-215ENST00000555259 KRT28Q7Z3Y7 464 aa14.7□□□□□ -0.06
SCFD1-215ENST00000555259 PPLO60437 1756 aa14.7□□□□□ -0.06
SCFD1-215ENST00000555259 KIF1AQ12756 1690 aa14.7□□□□□ -0.06
SCFD1-215ENST00000555259 PLCH1Q4KWH8 1693 aa14.7□□□□□ -0.06
SCFD1-215ENST00000555259 TECPR2O15040 1411 aa14.7□□□□□ -0.06
SCFD1-215ENST00000555259 NWD2Q9ULI1 1742 aa14.7□□□□□ -0.06
SCFD1-215ENST00000555259 CABLES1Q8TDN4 633 aa14.69□□□□□ -0.06
SCFD1-215ENST00000555259 STK26Q9P289 416 aa14.68□□□□□ -0.06
SCFD1-215ENST00000555259 TNS3Q68CZ2 1445 aa14.68□□□□□ -0.06
SCFD1-215ENST00000555259 FMN2Q9NZ56 1722 aa14.68□□□□□ -0.06
SCFD1-215ENST00000555259 PLEKHH1Q9ULM0 1364 aa14.68□□□□□ -0.06
SCFD1-215ENST00000555259 A0A0G2JS52 829 aa14.67□□□□□ -0.06
SCFD1-215ENST00000555259 MYT1Q01538 1121 aa14.67□□□□□ -0.06
SCFD1-215ENST00000555259 EN1Q05925 392 aaPredicted RBP14.67□□□□□ -0.06
SCFD1-215ENST00000555259 R3HDM1Q15032 1099 aaKnown RBP14.67□□□□□ -0.06
SCFD1-215ENST00000555259 PLEKHG5O94827 1062 aa14.66□□□□□ -0.06
SCFD1-215ENST00000555259 ABCC11Q96J66 1382 aa14.65□□□□□ -0.06
SCFD1-215ENST00000555259 ADGRF5Q8IZF2 1346 aa14.65□□□□□ -0.06
SCFD1-215ENST00000555259 FAM98CQ17RN3 349 aaKnown RBP14.65□□□□□ -0.06
SCFD1-215ENST00000555259 FAM83GA6ND36 823 aa14.64□□□□□ -0.07
SCFD1-215ENST00000555259 PSME1Q06323 249 aa14.64□□□□□ -0.07
SCFD1-215ENST00000555259 ABCA3Q99758 1704 aa14.64□□□□□ -0.07
SCFD1-215ENST00000555259 PHF8Q9UPP1 1060 aa14.64□□□□□ -0.07
SCFD1-215ENST00000555259 RGPD1P0DJD0 1748 aa14.64□□□□□ -0.07
SCFD1-215ENST00000555259 DISP2A7MBM2 1401 aa14.63□□□□□ -0.07
SCFD1-215ENST00000555259 SBNO1A3KN83 1393 aa14.63□□□□□ -0.07
SCFD1-215ENST00000555259 KNDC1Q76NI1 1749 aa14.63□□□□□ -0.07
SCFD1-215ENST00000555259 RRBP1Q9P2E9 1410 aaKnown RBP14.62□□□□□ -0.07
SCFD1-215ENST00000555259 ARHGEF10O15013 1369 aa14.62□□□□□ -0.07
SCFD1-215ENST00000555259 FAM182BQ5T319 152 aa14.62□□□□□ -0.07
SCFD1-215ENST00000555259 TMEM132EQ6IEE7 984 aa14.62□□□□□ -0.07
SCFD1-215ENST00000555259 LMOD2Q6P5Q4 547 aa14.62□□□□□ -0.07
SCFD1-215ENST00000555259 NRAPQ86VF7 1730 aa14.62□□□□□ -0.07
SCFD1-215ENST00000555259 NRXN1Q9ULB1 1477 aa14.61□□□□□ -0.07
SCFD1-215ENST00000555259 YY1P25490 414 aa14.6□□□□□ -0.07
SCFD1-215ENST00000555259 BTG4Q9NY30 223 aa14.6□□□□□ -0.07
SCFD1-215ENST00000555259 RGPD8O14715 1765 aaPredicted RBP14.6□□□□□ -0.07
SCFD1-215ENST00000555259 EZH2Q15910 746 aaKnown RBP14.6□□□□□ -0.07
SCFD1-215ENST00000555259 SLC4A1APQ9BWU0 796 aaKnown RBP14.6□□□□□ -0.07
SCFD1-215ENST00000555259 YTHDC2Q9H6S0 1430 aaKnown RBP14.59□□□□□ -0.07
SCFD1-215ENST00000555259 TNS1Q9HBL0 1735 aaKnown RBP14.59□□□□□ -0.07
SCFD1-215ENST00000555259 IFT172Q9UG01 1749 aa14.59□□□□□ -0.07
SCFD1-215ENST00000555259 ANKRD30BQ9BXX2 1392 aa14.58□□□□□ -0.08
SCFD1-215ENST00000555259 PIK3C2GO75747 1445 aa14.57□□□□□ -0.08
SCFD1-215ENST00000555259 MSH5O43196 834 aa14.57□□□□□ -0.08
SCFD1-215ENST00000555259 RGL3Q3MIN7 710 aa14.57□□□□□ -0.08
SCFD1-215ENST00000555259 SIRT1Q96EB6 747 aa14.57□□□□□ -0.08
SCFD1-215ENST00000555259 SPATA31A5Q5VU36 1347 aa14.57□□□□□ -0.08
SCFD1-215ENST00000555259 SPATA31A7Q8IWB4 1347 aa14.57□□□□□ -0.08
SCFD1-215ENST00000555259 CAMKK2Q96RR4 588 aa14.56□□□□□ -0.08
SCFD1-215ENST00000555259 THSD7AQ9UPZ6 1657 aa14.56□□□□□ -0.08
SCFD1-215ENST00000555259 SPATA31E1Q6ZUB1 1445 aa14.56□□□□□ -0.08
SCFD1-215ENST00000555259 COL14A1Q05707 1796 aaKnown RBP14.55□□□□□ -0.08
SCFD1-215ENST00000555259 UTRNP46939 3433 aa14.55□□□□□ -0.08
SCFD1-215ENST00000555259 ADGRB2O60241 1585 aa14.55□□□□□ -0.08
SCFD1-215ENST00000555259 PPARGC1BQ86YN6 1023 aaKnown RBP14.55□□□□□ -0.08
SCFD1-215ENST00000555259 PMFBP1Q8TBY8 1022 aa14.54□□□□□ -0.08
SCFD1-215ENST00000555259 PARD3Q8TEW0 1356 aa14.53□□□□□ -0.08
SCFD1-215ENST00000555259 TRIM37O94972 964 aa14.53□□□□□ -0.08
SCFD1-215ENST00000555259 TRPM3Q9HCF6 1732 aaPredicted RBP14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms