RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 C11orf95C9JLR9 678 aaPredicted RBP13.61□□□□□ -0.23
VRK1-203ENST00000555067 WFS1O76024 890 aa13.61□□□□□ -0.23
VRK1-203ENST00000555067 WNT7AO00755 349 aa13.6□□□□□ -0.23
VRK1-203ENST00000555067 NFX1Q12986 1120 aaKnown RBP13.6□□□□□ -0.23
VRK1-203ENST00000555067 ZBTB24O43167 697 aaPredicted RBP13.59□□□□□ -0.23
VRK1-203ENST00000555067 TTC24A2A3L6 582 aaPredicted RBP13.58□□□□□ -0.24
VRK1-203ENST00000555067 SMPD1P17405 629 aa13.58□□□□□ -0.24
VRK1-203ENST00000555067 KDM2AQ9Y2K7 1162 aa13.58□□□□□ -0.24
VRK1-203ENST00000555067 MMP16P51512 607 aa13.57□□□□□ -0.24
VRK1-203ENST00000555067 VSIG10Q8N0Z9 540 aa13.56□□□□□ -0.24
VRK1-203ENST00000555067 SNIP1Q8TAD8 396 aaKnown RBP13.56□□□□□ -0.24
VRK1-203ENST00000555067 WIPF1O43516 503 aa13.55□□□□□ -0.24
VRK1-203ENST00000555067 TRIM32Q13049 653 aa13.55□□□□□ -0.24
VRK1-203ENST00000555067 GRIPAP1Q4V328 841 aa13.55□□□□□ -0.24
VRK1-203ENST00000555067 Q3C1V9 767 aa13.52□□□□□ -0.25
VRK1-203ENST00000555067 ATP13A2Q9NQ11 1180 aa13.52□□□□□ -0.25
VRK1-203ENST00000555067 MRGPRX2Q96LB1 330 aa13.51□□□□□ -0.25
VRK1-203ENST00000555067 CD46P15529 392 aa13.5□□□□□ -0.25
VRK1-203ENST00000555067 J3QL48 77 aa13.49□□□□□ -0.25
VRK1-203ENST00000555067 DXOO77932 396 aaKnown RBP13.49□□□□□ -0.25
VRK1-203ENST00000555067 LCE2CQ5TA81 110 aa13.49□□□□□ -0.25
VRK1-203ENST00000555067 SNRPBP14678 240 aaKnown RBP13.47□□□□□ -0.25
VRK1-203ENST00000555067 TRIM47Q96LD4 638 aa13.47□□□□□ -0.25
VRK1-203ENST00000555067 USB1Q9BQ65 265 aaKnown RBP13.47□□□□□ -0.25
VRK1-203ENST00000555067 STK17AQ9UEE5 414 aa13.47□□□□□ -0.25
VRK1-203ENST00000555067 GPIHBP1Q8IV16 184 aa13.45□□□□□ -0.26
VRK1-203ENST00000555067 REPIN1Q9BWE0 567 aaKnown RBP13.45□□□□□ -0.26
VRK1-203ENST00000555067 SENP2Q9HC62 589 aa13.44□□□□□ -0.26
VRK1-203ENST00000555067 INSM1Q01101 510 aaPredicted RBP13.43□□□□□ -0.26
VRK1-203ENST00000555067 HPS1Q92902 700 aa13.43□□□□□ -0.26
VRK1-203ENST00000555067 TERTO14746 1132 aaKnown RBP13.42□□□□□ -0.26
VRK1-203ENST00000555067 KDM4AO75164 1064 aa13.42□□□□□ -0.26
VRK1-203ENST00000555067 SKOR1P84550 965 aa13.42□□□□□ -0.26
VRK1-203ENST00000555067 WNT7BP56706 349 aa13.4□□□□□ -0.26
VRK1-203ENST00000555067 RC3H1Q5TC82 1133 aaKnown RBP13.39□□□□□ -0.27
VRK1-203ENST00000555067 USP46P62068 366 aa13.38□□□□□ -0.27
VRK1-203ENST00000555067 HLA-CQ95604 372 aa13.38□□□□□ -0.27
VRK1-203ENST00000555067 MAP2K5Q13163 448 aa13.37□□□□□ -0.27
VRK1-203ENST00000555067 KIFC2Q96AC6 838 aa13.37□□□□□ -0.27
VRK1-203ENST00000555067 TULP1O00294 542 aaPredicted RBP13.36□□□□□ -0.27
VRK1-203ENST00000555067 HOXA2O43364 376 aa13.34□□□□□ -0.27
VRK1-203ENST00000555067 CCDC24Q8N4L8 307 aa13.34□□□□□ -0.27
VRK1-203ENST00000555067 IRF6O14896 467 aa13.32□□□□□ -0.28
VRK1-203ENST00000555067 JUNDP17535 347 aa13.31□□□□□ -0.28
VRK1-203ENST00000555067 SIAH2O43255 324 aa13.3□□□□□ -0.28
VRK1-203ENST00000555067 MDM2Q00987 491 aaPredicted RBP13.3□□□□□ -0.28
VRK1-203ENST00000555067 GUCA2AQ02747 115 aa13.28□□□□□ -0.28
VRK1-203ENST00000555067 ALDH1A1P00352 501 aa13.27□□□□□ -0.29
VRK1-203ENST00000555067 MINK1Q8N4C8 1332 aaPredicted RBP13.26□□□□□ -0.29
VRK1-203ENST00000555067 PTCRAQ6ISU1 281 aaPredicted RBP13.25□□□□□ -0.29
VRK1-203ENST00000555067 SYMPKQ92797 1274 aaKnown RBP13.25□□□□□ -0.29
VRK1-203ENST00000555067 RETREG3Q86VR2 466 aa13.24□□□□□ -0.29
VRK1-203ENST00000555067 TRIM46Q7Z4K8 759 aa13.23□□□□□ -0.29
VRK1-203ENST00000555067 NUDT12Q9BQG2 462 aa13.23□□□□□ -0.29
VRK1-203ENST00000555067 NXF1Q9UBU9 619 aaKnown RBP13.23□□□□□ -0.29
VRK1-203ENST00000555067 FAM217BQ9NTX9 383 aaPredicted RBP13.22□□□□□ -0.29
VRK1-203ENST00000555067 NPAS3Q8IXF0 933 aa13.21□□□□□ -0.29
VRK1-203ENST00000555067 SLC16A10Q8TF71 515 aa13.21□□□□□ -0.29
VRK1-203ENST00000555067 LORP23490 312 aaPredicted RBP13.2□□□□□ -0.3
VRK1-203ENST00000555067 EHBP1Q8NDI1 1231 aa13.2□□□□□ -0.3
VRK1-203ENST00000555067 CCDC102AQ96A19 550 aa13.2□□□□□ -0.3
VRK1-203ENST00000555067 GPCPD1Q9NPB8 672 aa13.2□□□□□ -0.3
VRK1-203ENST00000555067 BMP1P13497 986 aa13.19□□□□□ -0.3
VRK1-203ENST00000555067 CAPN5O15484 640 aaPredicted RBP13.18□□□□□ -0.3
VRK1-203ENST00000555067 CLCN1P35523 988 aa13.17□□□□□ -0.3
VRK1-203ENST00000555067 SH3BP2P78314 561 aa13.17□□□□□ -0.3
VRK1-203ENST00000555067 GMPRP36959 345 aa13.16□□□□□ -0.3
VRK1-203ENST00000555067 PCDHGC3Q9UN70 934 aa13.16□□□□□ -0.3
VRK1-203ENST00000555067 WASF2Q9Y6W5 498 aa13.15□□□□□ -0.3
VRK1-203ENST00000555067 NUTM1Q86Y26 1132 aa13.14□□□□□ -0.31
VRK1-203ENST00000555067 CCNYL3P0C7X3 344 aa13.13□□□□□ -0.31
VRK1-203ENST00000555067 FDX1P10109 184 aa13.13□□□□□ -0.31
VRK1-203ENST00000555067 IRF7Q92985 503 aa13.13□□□□□ -0.31
VRK1-203ENST00000555067 FAM181BA6NEQ2 426 aa13.12□□□□□ -0.31
VRK1-203ENST00000555067 H3BM21 787 aa13.11□□□□□ -0.31
VRK1-203ENST00000555067 MS4A1P11836 297 aa13.11□□□□□ -0.31
VRK1-203ENST00000555067 PTPRNQ16849 979 aa13.11□□□□□ -0.31
VRK1-203ENST00000555067 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.1□□□□□ -0.31
VRK1-203ENST00000555067 ZSCAN1Q8NBB4 408 aa13.1□□□□□ -0.31
VRK1-203ENST00000555067 EVA1BQ9NVM1 165 aa13.1□□□□□ -0.31
VRK1-203ENST00000555067 MPNDQ8N594 471 aa13.09□□□□□ -0.31
VRK1-203ENST00000555067 UNC93B1Q9H1C4 597 aa13.09□□□□□ -0.31
VRK1-203ENST00000555067 C6orf229H3BNL8 230 aa13.08□□□□□ -0.32
VRK1-203ENST00000555067 ZFP42Q96MM3 310 aa13.08□□□□□ -0.32
VRK1-203ENST00000555067 ERBB4Q15303 1308 aa13.07□□□□□ -0.32
VRK1-203ENST00000555067 VEGFBP49765 207 aa13.06□□□□□ -0.32
VRK1-203ENST00000555067 TLL2Q9Y6L7 1015 aa13.06□□□□□ -0.32
VRK1-203ENST00000555067 KCNH2Q12809 1159 aa13.05□□□□□ -0.32
VRK1-203ENST00000555067 SPIRE2Q8WWL2 714 aa13.05□□□□□ -0.32
VRK1-203ENST00000555067 BAP1Q92560 729 aa13.05□□□□□ -0.32
VRK1-203ENST00000555067 LINC01559Q495D7 138 aa13.04□□□□□ -0.32
VRK1-203ENST00000555067 VARSP26640 1264 aaKnown RBP13.03□□□□□ -0.32
VRK1-203ENST00000555067 ZNF511Q8NB15 262 aa13.03□□□□□ -0.32
VRK1-203ENST00000555067 DESI1Q6ICB0 168 aa13.02□□□□□ -0.33
VRK1-203ENST00000555067 PLEKHG3A1L390 1219 aa13.01□□□□□ -0.33
VRK1-203ENST00000555067 SSTR3P32745 418 aaPredicted RBP13.01□□□□□ -0.33
VRK1-203ENST00000555067 NNTQ13423 1086 aa13.01□□□□□ -0.33
VRK1-203ENST00000555067 MRPL14Q6P1L8 145 aaKnown RBP13.01□□□□□ -0.33
VRK1-203ENST00000555067 MOXD2PA6NHM9 499 aa13□□□□□ -0.33
VRK1-203ENST00000555067 NDUFV2P19404 249 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms