RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 PAXIP1Q6ZW49 1069 aaPredicted RBP8.27□□□□□ -1.08
SYNE2-216ENST00000555002 REC8O95072 547 aa8.27□□□□□ -1.09
SYNE2-216ENST00000555002 TAX1BP1Q86VP1 789 aa8.27□□□□□ -1.09
SYNE2-216ENST00000555002 ANKRD18AQ8IVF6 992 aa8.27□□□□□ -1.09
SYNE2-216ENST00000555002 ZNF428Q96B54 188 aa8.27□□□□□ -1.09
SYNE2-216ENST00000555002 TIMELESSQ9UNS1 1208 aa8.27□□□□□ -1.09
SYNE2-216ENST00000555002 PRDM2Q13029 1718 aa8.27□□□□□ -1.09
SYNE2-216ENST00000555002 SF3B2Q13435 895 aaKnown RBP8.27□□□□□ -1.09
SYNE2-216ENST00000555002 RSPH6AQ9H0K4 717 aa8.27□□□□□ -1.09
SYNE2-216ENST00000555002 SLC3A2P08195 630 aaKnown RBP8.26□□□□□ -1.09
SYNE2-216ENST00000555002 RIC3Q7Z5B4 369 aa8.26□□□□□ -1.09
SYNE2-216ENST00000555002 FAM193AP78312 1265 aa8.26□□□□□ -1.09
SYNE2-216ENST00000555002 SKOR2Q2VWA4 1001 aaPredicted RBP8.26□□□□□ -1.09
SYNE2-216ENST00000555002 GBP2P32456 591 aaPredicted RBP8.26□□□□□ -1.09
SYNE2-216ENST00000555002 NLRP2Q9NX02 1062 aa8.26□□□□□ -1.09
SYNE2-216ENST00000555002 NAT10Q9H0A0 1025 aaKnown RBP8.26□□□□□ -1.09
SYNE2-216ENST00000555002 XBP1P17861 261 aa8.25□□□□□ -1.09
SYNE2-216ENST00000555002 GOLGA6L10A6NI86 522 aa8.25□□□□□ -1.09
SYNE2-216ENST00000555002 FKBP5Q13451 457 aaPredicted RBP8.25□□□□□ -1.09
SYNE2-216ENST00000555002 CWC15Q9P013 229 aaKnown RBP8.25□□□□□ -1.09
SYNE2-216ENST00000555002 EEA1Q15075 1411 aa8.25□□□□□ -1.09
SYNE2-216ENST00000555002 CT47B1P0C2W7 299 aaPredicted RBP8.25□□□□□ -1.09
SYNE2-216ENST00000555002 ATF3P18847 181 aa8.25□□□□□ -1.09
SYNE2-216ENST00000555002 ZKSCAN2Q63HK3 967 aa8.25□□□□□ -1.09
SYNE2-216ENST00000555002 SART3Q15020 963 aaKnown RBP8.25□□□□□ -1.09
SYNE2-216ENST00000555002 FHAD1B1AJZ9 1412 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 TXLNAP40222 546 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 CLASRPQ8N2M8 674 aaKnown RBP8.24□□□□□ -1.09
SYNE2-216ENST00000555002 FAM161AQ3B820 660 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 KIF6Q6ZMV9 814 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 TMEM87AQ8NBN3 555 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 SDF4Q9BRK5 362 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 CEP164Q9UPV0 1460 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 TTC16Q8NEE8 873 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 FMNL2Q96PY5 1086 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 SETD5Q9C0A6 1442 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.24□□□□□ -1.09
SYNE2-216ENST00000555002 NINLQ9Y2I6 1382 aa8.24□□□□□ -1.09
SYNE2-216ENST00000555002 SSBP05455 408 aaKnown RBP eCLIP8.23□□□□□ -1.09
SYNE2-216ENST00000555002 CCER2I3L3R5 266 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 CEBPZQ03701 1054 aaKnown RBP8.23□□□□□ -1.09
SYNE2-216ENST00000555002 CCDC112Q8NEF3 446 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 ERC2O15083 957 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 DNAJC2Q99543 621 aaKnown RBP8.23□□□□□ -1.09
SYNE2-216ENST00000555002 FSD1Q9BTV5 496 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 TSPYL4Q9UJ04 414 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 TBC1D2BQ9UPU7 963 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 WRNQ14191 1432 aaPredicted RBP eCLIP8.23□□□□□ -1.09
SYNE2-216ENST00000555002 SMARCE1Q969G3 411 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 SCLT1Q96NL6 688 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 PUS7Q96PZ0 661 aaKnown RBP8.23□□□□□ -1.09
SYNE2-216ENST00000555002 TANGO6Q9C0B7 1094 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 STRN4Q9NRL3 753 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 CCDC181Q5TID7 509 aa8.23□□□□□ -1.09
SYNE2-216ENST00000555002 ERCC4Q92889 916 aaPredicted RBP8.23□□□□□ -1.09
SYNE2-216ENST00000555002 RB1CC1Q8TDY2 1594 aa8.22□□□□□ -1.09
SYNE2-216ENST00000555002 PIBF1Q8WXW3 757 aa8.22□□□□□ -1.09
SYNE2-216ENST00000555002 RBM42Q9BTD8 480 aaKnown RBP8.22□□□□□ -1.09
SYNE2-216ENST00000555002 ANKRD30AQ9BXX3 1397 aa8.22□□□□□ -1.09
SYNE2-216ENST00000555002 DEF6Q9H4E7 631 aa8.22□□□□□ -1.09
SYNE2-216ENST00000555002 KIAA0754O94854 1291 aa8.22□□□□□ -1.09
SYNE2-216ENST00000555002 COG6Q9Y2V7 657 aa8.22□□□□□ -1.09
SYNE2-216ENST00000555002 CHMP5Q9NZZ3 219 aa8.22□□□□□ -1.09
SYNE2-216ENST00000555002 CRBNQ96SW2 442 aa8.21□□□□□ -1.09
SYNE2-216ENST00000555002 ZNHIT6Q9NWK9 470 aaKnown RBP8.21□□□□□ -1.09
SYNE2-216ENST00000555002 CARMIL2Q6F5E8 1435 aa8.21□□□□□ -1.09
SYNE2-216ENST00000555002 TTC39AQ5SRH9 613 aa8.21□□□□□ -1.09
SYNE2-216ENST00000555002 ROCK1Q13464 1354 aa8.21□□□□□ -1.09
SYNE2-216ENST00000555002 NUTM2BA6NNL0 878 aaPredicted RBP8.21□□□□□ -1.09
SYNE2-216ENST00000555002 NUTM2EB1AL46 878 aaPredicted RBP8.21□□□□□ -1.09
SYNE2-216ENST00000555002 NUTM2AQ8IVF1 878 aaPredicted RBP8.21□□□□□ -1.09
SYNE2-216ENST00000555002 TRIM5Q9C035 493 aa8.21□□□□□ -1.09
SYNE2-216ENST00000555002 EFCAB2Q5VUJ9 269 aa8.21□□□□□ -1.1
SYNE2-216ENST00000555002 ANAPC15P60006 121 aa8.21□□□□□ -1.1
SYNE2-216ENST00000555002 TAF3Q5VWG9 929 aa8.21□□□□□ -1.1
SYNE2-216ENST00000555002 RSPH4AQ5TD94 716 aa8.21□□□□□ -1.1
SYNE2-216ENST00000555002 SPINK5Q9NQ38 1064 aaPredicted RBP8.21□□□□□ -1.1
SYNE2-216ENST00000555002 FILIP1LQ4L180 1135 aa8.21□□□□□ -1.1
SYNE2-216ENST00000555002 GNL3LQ9NVN8 582 aaKnown RBP8.21□□□□□ -1.1
SYNE2-216ENST00000555002 DESP17661 470 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 CA8P35219 290 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 RAPGEF4Q8WZA2 1011 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 CUX2O14529 1486 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 KINO60870 393 aaKnown RBP8.2□□□□□ -1.1
SYNE2-216ENST00000555002 HNRNPMP52272 730 aaKnown RBP eCLIP8.2□□□□□ -1.1
SYNE2-216ENST00000555002 PANK3Q9H999 370 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 EVC2Q86UK5 1308 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 TTLL12Q14166 644 aaPredicted RBP8.2□□□□□ -1.1
SYNE2-216ENST00000555002 RNF214Q8ND24 703 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 STIM1Q13586 685 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 KIF15Q9NS87 1388 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 HMOX1P09601 288 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 NF2P35240 595 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 LEKR1Q6ZMV7 388 aa8.2□□□□□ -1.1
SYNE2-216ENST00000555002 GRIPAP1Q4V328 841 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 INCENPQ9NQS7 918 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 COMMD10Q9Y6G5 202 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 ZNF76P36508 570 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 CEP63Q96MT8 703 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 CENPQQ7L2Z9 268 aaPredicted RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms