RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 SCUBE3Q8IX30 993 aa3.64□□□□□ -1.83
PRPF39-208ENST00000554785 CRIPAKQ8N1N5 446 aa3.64□□□□□ -1.83
PRPF39-208ENST00000554785 CCDC102AQ96A19 550 aa3.64□□□□□ -1.83
PRPF39-208ENST00000554785 TERTO14746 1132 aaKnown RBP3.64□□□□□ -1.83
PRPF39-208ENST00000554785 PPEF1O14829 653 aaPredicted RBP3.64□□□□□ -1.83
PRPF39-208ENST00000554785 GSK3AP49840 483 aa3.64□□□□□ -1.83
PRPF39-208ENST00000554785 CTC1Q2NKJ3 1217 aa3.64□□□□□ -1.83
PRPF39-208ENST00000554785 RDH13Q8NBN7 331 aa3.64□□□□□ -1.83
PRPF39-208ENST00000554785 REPIN1Q9BWE0 567 aaKnown RBP3.64□□□□□ -1.83
PRPF39-208ENST00000554785 RPIAP49247 311 aa3.63□□□□□ -1.83
PRPF39-208ENST00000554785 MDM2Q00987 491 aaPredicted RBP3.63□□□□□ -1.83
PRPF39-208ENST00000554785 ZNF697Q5TEC3 545 aa3.63□□□□□ -1.83
PRPF39-208ENST00000554785 TRIM67Q6ZTA4 783 aa3.63□□□□□ -1.83
PRPF39-208ENST00000554785 MINK1Q8N4C8 1332 aaPredicted RBP3.63□□□□□ -1.83
PRPF39-208ENST00000554785 GDF11O95390 407 aa3.62□□□□□ -1.83
PRPF39-208ENST00000554785 ADH1BP00325 375 aa3.62□□□□□ -1.83
PRPF39-208ENST00000554785 GCGRP47871 477 aa3.62□□□□□ -1.83
PRPF39-208ENST00000554785 ZC3H15Q8WU90 426 aaKnown RBP3.62□□□□□ -1.83
PRPF39-208ENST00000554785 FAM187AA6NFU0 413 aa3.62□□□□□ -1.83
PRPF39-208ENST00000554785 TULP1O00294 542 aaPredicted RBP3.62□□□□□ -1.83
PRPF39-208ENST00000554785 GDF9O60383 454 aa3.62□□□□□ -1.83
PRPF39-208ENST00000554785 ZMYND10O75800 440 aa3.62□□□□□ -1.83
PRPF39-208ENST00000554785 S1PR4O95977 384 aa3.62□□□□□ -1.83
PRPF39-208ENST00000554785 MORN1Q5T089 497 aa3.62□□□□□ -1.83
PRPF39-208ENST00000554785 HLA-CQ95604 372 aa3.62□□□□□ -1.83
PRPF39-208ENST00000554785 PLA2G2CQ5R387 149 aa3.61□□□□□ -1.83
PRPF39-208ENST00000554785 THAP11Q96EK4 314 aa3.61□□□□□ -1.83
PRPF39-208ENST00000554785 SLC27A5Q9Y2P5 690 aa3.61□□□□□ -1.83
PRPF39-208ENST00000554785 CD2BP2O95400 341 aaKnown RBP3.61□□□□□ -1.83
PRPF39-208ENST00000554785 AVPP01185 164 aa3.61□□□□□ -1.83
PRPF39-208ENST00000554785 CD46P15529 392 aa3.61□□□□□ -1.83
PRPF39-208ENST00000554785 SMCPP49901 116 aaPredicted RBP3.61□□□□□ -1.83
PRPF39-208ENST00000554785 BARGINQ6ZT62 677 aa3.61□□□□□ -1.83
PRPF39-208ENST00000554785 SLC6A16Q9GZN6 736 aa3.61□□□□□ -1.83
PRPF39-208ENST00000554785 C11orf95C9JLR9 678 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-208ENST00000554785 ATP6V1AP38606 617 aa3.6□□□□□ -1.83
PRPF39-208ENST00000554785 SULF1Q8IWU6 871 aa3.6□□□□□ -1.83
PRPF39-208ENST00000554785 FAM160A2Q8N612 972 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-208ENST00000554785 RNF19BQ6ZMZ0 732 aa3.59□□□□□ -1.83
PRPF39-208ENST00000554785 Q8N3U1 123 aa3.59□□□□□ -1.83
PRPF39-208ENST00000554785 SPSB2Q99619 263 aa3.59□□□□□ -1.83
PRPF39-208ENST00000554785 PRDM9Q9NQV7 894 aa3.59□□□□□ -1.83
PRPF39-208ENST00000554785 AAASQ9NRG9 546 aa3.59□□□□□ -1.83
PRPF39-208ENST00000554785 FAM217BQ9NTX9 383 aaPredicted RBP3.59□□□□□ -1.83
PRPF39-208ENST00000554785 GUCA2AQ02747 115 aa3.59□□□□□ -1.84
PRPF39-208ENST00000554785 LIAT1Q6ZQX7 453 aa3.59□□□□□ -1.84
PRPF39-208ENST00000554785 KRI1Q8N9T8 703 aaKnown RBP3.59□□□□□ -1.84
PRPF39-208ENST00000554785 RASSF7Q02833 373 aa3.58□□□□□ -1.84
PRPF39-208ENST00000554785 BRICD5Q6PL45 260 aa3.58□□□□□ -1.84
PRPF39-208ENST00000554785 SENP2Q9HC62 589 aa3.58□□□□□ -1.84
PRPF39-208ENST00000554785 GPCPD1Q9NPB8 672 aa3.58□□□□□ -1.84
PRPF39-208ENST00000554785 ADAM23O75077 832 aa3.58□□□□□ -1.84
PRPF39-208ENST00000554785 KDM4AO75164 1064 aa3.58□□□□□ -1.84
PRPF39-208ENST00000554785 KRTAP19-1Q8IUB9 90 aa3.58□□□□□ -1.84
PRPF39-208ENST00000554785 CYP4X1Q8N118 509 aa3.58□□□□□ -1.84
PRPF39-208ENST00000554785 KIFC2Q96AC6 838 aa3.58□□□□□ -1.84
PRPF39-208ENST00000554785 AXIN1O15169 862 aa3.57□□□□□ -1.84
PRPF39-208ENST00000554785 SYMPKQ92797 1274 aaKnown RBP3.57□□□□□ -1.84
PRPF39-208ENST00000554785 SALL2Q9Y467 1007 aaPredicted RBP3.57□□□□□ -1.84
PRPF39-208ENST00000554785 HOXA2O43364 376 aa3.56□□□□□ -1.84
PRPF39-208ENST00000554785 SSTR3P32745 418 aaPredicted RBP3.56□□□□□ -1.84
PRPF39-208ENST00000554785 CLCN1P35523 988 aa3.56□□□□□ -1.84
PRPF39-208ENST00000554785 AMHR2Q16671 573 aa3.56□□□□□ -1.84
PRPF39-208ENST00000554785 TRIM66O15016 1216 aa3.56□□□□□ -1.84
PRPF39-208ENST00000554785 FMNL1O95466 1100 aaPredicted RBP3.56□□□□□ -1.84
PRPF39-208ENST00000554785 GIGYF2Q6Y7W6 1299 aaKnown RBP3.56□□□□□ -1.84
PRPF39-208ENST00000554785 BCANQ96GW7 911 aa3.56□□□□□ -1.84
PRPF39-208ENST00000554785 TOR4AQ9NXH8 423 aa3.56□□□□□ -1.84
PRPF39-208ENST00000554785 PCDHGC3Q9UN70 934 aa3.56□□□□□ -1.84
PRPF39-208ENST00000554785 FCF1Q9Y324 198 aaKnown RBP3.56□□□□□ -1.84
PRPF39-208ENST00000554785 TNFRSF10AO00220 468 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 ST8SIA5O15466 376 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 MS4A1P11836 297 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 TTLL12Q14166 644 aaPredicted RBP3.55□□□□□ -1.84
PRPF39-208ENST00000554785 GPAT2Q6NUI2 795 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 PARP9Q8IXQ6 854 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 PKD2L1Q9P0L9 805 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 ZBTB24O43167 697 aaPredicted RBP3.55□□□□□ -1.84
PRPF39-208ENST00000554785 NDUFV2P19404 249 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 SPIRE2Q8WWL2 714 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 GOLGA2P5Q9HBQ8 144 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 SLC24A3Q9HC58 644 aa3.55□□□□□ -1.84
PRPF39-208ENST00000554785 GRIPAP1Q4V328 841 aa3.54□□□□□ -1.84
PRPF39-208ENST00000554785 NPAS3Q8IXF0 933 aa3.54□□□□□ -1.84
PRPF39-208ENST00000554785 SLC16A10Q8TF71 515 aa3.54□□□□□ -1.84
PRPF39-208ENST00000554785 MOXD2PA6NHM9 499 aa3.53□□□□□ -1.84
PRPF39-208ENST00000554785 MSS51Q4VC12 460 aa3.53□□□□□ -1.84
PRPF39-208ENST00000554785 USB1Q9BQ65 265 aaKnown RBP3.53□□□□□ -1.84
PRPF39-208ENST00000554785 BEGAINQ9BUH8 593 aa3.53□□□□□ -1.84
PRPF39-208ENST00000554785 TTC24A2A3L6 582 aaPredicted RBP3.53□□□□□ -1.84
PRPF39-208ENST00000554785 GMPRP36959 345 aa3.53□□□□□ -1.84
PRPF39-208ENST00000554785 MMP16P51512 607 aa3.53□□□□□ -1.84
PRPF39-208ENST00000554785 USP46P62068 366 aa3.53□□□□□ -1.84
PRPF39-208ENST00000554785 FOXC1Q12948 553 aa3.53□□□□□ -1.84
PRPF39-208ENST00000554785 NUTM1Q86Y26 1132 aa3.53□□□□□ -1.84
PRPF39-208ENST00000554785 SNIP1Q8TAD8 396 aaKnown RBP3.53□□□□□ -1.84
PRPF39-208ENST00000554785 AK7Q96M32 723 aa3.53□□□□□ -1.84
PRPF39-208ENST00000554785 GMPR2Q9P2T1 348 aaKnown RBP3.53□□□□□ -1.84
PRPF39-208ENST00000554785 WNT7AO00755 349 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 FOXK2Q01167 660 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms