RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 CDK12Q9NYV4 1490 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-215ENST00000554656 FMN2Q9NZ56 1722 aa15.8■□□□□ 0.12
SHMT2-215ENST00000554656 ANKRD30BQ9BXX2 1392 aa15.8■□□□□ 0.12
SHMT2-215ENST00000554656 PXDNQ92626 1479 aa15.79■□□□□ 0.12
SHMT2-215ENST00000554656 LRPPRCP42704 1394 aaKnown RBP15.79■□□□□ 0.12
SHMT2-215ENST00000554656 PLEKHH1Q9ULM0 1364 aa15.79■□□□□ 0.12
SHMT2-215ENST00000554656 MARF1Q9Y4F3 1742 aaKnown RBP15.78■□□□□ 0.12
SHMT2-215ENST00000554656 C8orf37Q96NL8 207 aa15.78■□□□□ 0.12
SHMT2-215ENST00000554656 RGS12O14924 1447 aa15.77■□□□□ 0.12
SHMT2-215ENST00000554656 RXRBP28702 533 aa15.77■□□□□ 0.12
SHMT2-215ENST00000554656 RGPD8O14715 1765 aaPredicted RBP15.77■□□□□ 0.11
SHMT2-215ENST00000554656 MYOM2P54296 1465 aa15.77■□□□□ 0.11
SHMT2-215ENST00000554656 NRXN1Q9ULB1 1477 aa15.77■□□□□ 0.11
SHMT2-215ENST00000554656 ABCC11Q96J66 1382 aa15.76■□□□□ 0.11
SHMT2-215ENST00000554656 TMEM132EQ6IEE7 984 aa15.76■□□□□ 0.11
SHMT2-215ENST00000554656 WAPLQ7Z5K2 1190 aa15.76■□□□□ 0.11
SHMT2-215ENST00000554656 UPF1Q92900 1129 aaKnown RBP eCLIP15.76■□□□□ 0.11
SHMT2-215ENST00000554656 STK26Q9P289 416 aa15.76■□□□□ 0.11
SHMT2-215ENST00000554656 YTHDC2Q9H6S0 1430 aaKnown RBP15.76■□□□□ 0.11
SHMT2-215ENST00000554656 ADAMTS2O95450 1211 aa15.74■□□□□ 0.11
SHMT2-215ENST00000554656 KIF1AQ12756 1690 aa15.73■□□□□ 0.11
SHMT2-215ENST00000554656 RAB3GAP2Q9H2M9 1393 aa15.73■□□□□ 0.11
SHMT2-215ENST00000554656 ESCO1Q5FWF5 840 aa15.72■□□□□ 0.11
SHMT2-215ENST00000554656 QTRT2Q9H974 415 aaKnown RBP15.72■□□□□ 0.11
SHMT2-215ENST00000554656 NPHP3Q7Z494 1330 aa15.71■□□□□ 0.11
SHMT2-215ENST00000554656 NUTM2FA1L443 756 aa15.71■□□□□ 0.11
SHMT2-215ENST00000554656 XPCQ01831 940 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-215ENST00000554656 FOXO3O43524 673 aa15.7■□□□□ 0.1
SHMT2-215ENST00000554656 RBM6P78332 1123 aaKnown RBP15.7■□□□□ 0.1
SHMT2-215ENST00000554656 NGLY1Q96IV0 654 aa15.7■□□□□ 0.1
SHMT2-215ENST00000554656 ATRNO75882 1429 aa15.69■□□□□ 0.1
SHMT2-215ENST00000554656 C14orf93Q9H972 538 aaKnown RBP15.69■□□□□ 0.1
SHMT2-215ENST00000554656 USP32Q8NFA0 1604 aa15.68■□□□□ 0.1
SHMT2-215ENST00000554656 ADGRB1O14514 1584 aa15.68■□□□□ 0.1
SHMT2-215ENST00000554656 CFAP70Q5T0N1 1121 aa15.68■□□□□ 0.1
SHMT2-215ENST00000554656 ABCA3Q99758 1704 aa15.68■□□□□ 0.1
SHMT2-215ENST00000554656 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.68■□□□□ 0.1
SHMT2-215ENST00000554656 BCL9LQ86UU0 1499 aa15.67■□□□□ 0.1
SHMT2-215ENST00000554656 FNBP4Q8N3X1 1017 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-215ENST00000554656 DLC1Q96QB1 1528 aa15.67■□□□□ 0.1
SHMT2-215ENST00000554656 ADGRB2O60241 1585 aa15.66■□□□□ 0.1
SHMT2-215ENST00000554656 USP21Q9UK80 565 aa15.66■□□□□ 0.1
SHMT2-215ENST00000554656 SIRT1Q96EB6 747 aa15.65■□□□□ 0.1
SHMT2-215ENST00000554656 ACIN1Q9UKV3 1341 aaKnown RBP15.65■□□□□ 0.1
SHMT2-215ENST00000554656 DHX57Q6P158 1386 aaKnown RBP15.64■□□□□ 0.09
SHMT2-215ENST00000554656 SPATA31A3Q5VYP0 1347 aa15.64■□□□□ 0.09
SHMT2-215ENST00000554656 TRPC5Q9UL62 973 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-215ENST00000554656 EP400Q96L91 3159 aa15.63■□□□□ 0.09
SHMT2-215ENST00000554656 TRPM3Q9HCF6 1732 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-215ENST00000554656 GLI3P10071 1580 aa15.62■□□□□ 0.09
SHMT2-215ENST00000554656 SAFB2Q14151 953 aaKnown RBP eCLIP15.62■□□□□ 0.09
SHMT2-215ENST00000554656 PRAM1Q96QH2 718 aa15.62■□□□□ 0.09
SHMT2-215ENST00000554656 SLIT2O94813 1529 aa15.62■□□□□ 0.09
SHMT2-215ENST00000554656 TNS3Q68CZ2 1445 aa15.61■□□□□ 0.09
SHMT2-215ENST00000554656 PLCH1Q4KWH8 1693 aa15.61■□□□□ 0.09
SHMT2-215ENST00000554656 ARHGEF28Q8N1W1 1705 aaKnown RBP15.6■□□□□ 0.09
SHMT2-215ENST00000554656 TRIM26Q12899 539 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-215ENST00000554656 PHF8Q9UPP1 1060 aa15.6■□□□□ 0.09
SHMT2-215ENST00000554656 BRWD3Q6RI45 1802 aa15.59■□□□□ 0.09
SHMT2-215ENST00000554656 KRT28Q7Z3Y7 464 aa15.59■□□□□ 0.09
SHMT2-215ENST00000554656 ALS2Q96Q42 1657 aa15.59■□□□□ 0.09
SHMT2-215ENST00000554656 ATAD2Q6PL18 1390 aa15.59■□□□□ 0.09
SHMT2-215ENST00000554656 ANKARQ7Z5J8 1434 aa15.59■□□□□ 0.09
SHMT2-215ENST00000554656 NWD2Q9ULI1 1742 aa15.58■□□□□ 0.08
SHMT2-215ENST00000554656 SBNO1A3KN83 1393 aa15.57■□□□□ 0.08
SHMT2-215ENST00000554656 RALGAPBQ86X10 1494 aa15.57■□□□□ 0.08
SHMT2-215ENST00000554656 CRYBG1Q9Y4K1 1723 aa15.57■□□□□ 0.08
SHMT2-215ENST00000554656 PRR36Q9H6K5 1346 aa15.56■□□□□ 0.08
SHMT2-215ENST00000554656 TULP4Q9NRJ4 1543 aa15.56■□□□□ 0.08
SHMT2-215ENST00000554656 NRAPQ86VF7 1730 aa15.56■□□□□ 0.08
SHMT2-215ENST00000554656 CABLES1Q8TDN4 633 aa15.55■□□□□ 0.08
SHMT2-215ENST00000554656 GJD4Q96KN9 370 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-215ENST00000554656 TRAK1Q9UPV9 953 aa15.55■□□□□ 0.08
SHMT2-215ENST00000554656 KDM2AQ9Y2K7 1162 aa15.55■□□□□ 0.08
SHMT2-215ENST00000554656 HIRIP3Q9BW71 556 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-215ENST00000554656 POGKQ9P215 609 aa15.54■□□□□ 0.08
SHMT2-215ENST00000554656 MINK1Q8N4C8 1332 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-215ENST00000554656 UNC5CLQ8IV45 518 aa15.53■□□□□ 0.08
SHMT2-215ENST00000554656 PMFBP1Q8TBY8 1022 aa15.53■□□□□ 0.08
SHMT2-215ENST00000554656 DCAF11Q8TEB1 546 aa15.53■□□□□ 0.08
SHMT2-215ENST00000554656 ARHGEF10O15013 1369 aa15.52■□□□□ 0.08
SHMT2-215ENST00000554656 ITSN1Q15811 1721 aa15.52■□□□□ 0.08
SHMT2-215ENST00000554656 PLEKHG5O94827 1062 aa15.51■□□□□ 0.07
SHMT2-215ENST00000554656 HRCP23327 699 aa15.51■□□□□ 0.07
SHMT2-215ENST00000554656 PSME1Q06323 249 aa15.51■□□□□ 0.07
SHMT2-215ENST00000554656 ATP7BP35670 1465 aa15.51■□□□□ 0.07
SHMT2-215ENST00000554656 KIAA1210Q9ULL0 1709 aa15.51■□□□□ 0.07
SHMT2-215ENST00000554656 TOPAZ1Q8N9V7 1692 aa15.51■□□□□ 0.07
SHMT2-215ENST00000554656 COL14A1Q05707 1796 aaKnown RBP15.49■□□□□ 0.07
SHMT2-215ENST00000554656 WASLO00401 505 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-215ENST00000554656 LMOD2Q6P5Q4 547 aa15.48■□□□□ 0.07
SHMT2-215ENST00000554656 EIF3AQ14152 1382 aaKnown RBP15.48■□□□□ 0.07
SHMT2-215ENST00000554656 HAP1P54257 671 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-215ENST00000554656 VPS72Q15906 364 aa15.47■□□□□ 0.07
SHMT2-215ENST00000554656 PHRF1Q9P1Y6 1649 aaKnown RBP15.46■□□□□ 0.07
SHMT2-215ENST00000554656 SRCAPQ6ZRS2 3230 aa15.46■□□□□ 0.07
SHMT2-215ENST00000554656 FAM83GA6ND36 823 aa15.46■□□□□ 0.07
SHMT2-215ENST00000554656 STAC3Q96MF2 364 aa15.46■□□□□ 0.07
SHMT2-215ENST00000554656 PCGF6Q9BYE7 350 aa15.45■□□□□ 0.06
SHMT2-215ENST00000554656 GPRASP1Q5JY77 1395 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms