RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 A2ML1A8K2U0 1454 aa15.58■□□□□ 0.08
SHMT2-212ENST00000554467 SLC24A1O60721 1099 aa15.57■□□□□ 0.08
SHMT2-212ENST00000554467 ARHGEF28Q8N1W1 1705 aaKnown RBP15.57■□□□□ 0.08
SHMT2-212ENST00000554467 WDR43Q15061 677 aaKnown RBP eCLIP15.57■□□□□ 0.08
SHMT2-212ENST00000554467 CCDC146Q8IYE0 955 aa15.57■□□□□ 0.08
SHMT2-212ENST00000554467 RIMS2Q9UQ26 1411 aa15.56■□□□□ 0.08
SHMT2-212ENST00000554467 TULP4Q9NRJ4 1543 aa15.56■□□□□ 0.08
SHMT2-212ENST00000554467 ZFYVE9O95405 1425 aa15.56■□□□□ 0.08
SHMT2-212ENST00000554467 YTHDC2Q9H6S0 1430 aaKnown RBP15.56■□□□□ 0.08
SHMT2-212ENST00000554467 SMG6Q86US8 1419 aaKnown RBP15.55■□□□□ 0.08
SHMT2-212ENST00000554467 SPATA31D1Q6ZQQ2 1576 aa15.54■□□□□ 0.08
SHMT2-212ENST00000554467 MORC1Q86VD1 984 aa15.54■□□□□ 0.08
SHMT2-212ENST00000554467 ALKQ9UM73 1620 aa15.54■□□□□ 0.08
SHMT2-212ENST00000554467 PLEKHH1Q9ULM0 1364 aa15.52■□□□□ 0.08
SHMT2-212ENST00000554467 PTPRMP28827 1452 aa15.52■□□□□ 0.08
SHMT2-212ENST00000554467 TNRQ92752 1358 aa15.52■□□□□ 0.07
SHMT2-212ENST00000554467 TXNDC2Q86VQ3 553 aa15.51■□□□□ 0.07
SHMT2-212ENST00000554467 B4GALNT3Q6L9W6 998 aa15.5■□□□□ 0.07
SHMT2-212ENST00000554467 CDK19Q9BWU1 502 aa15.5■□□□□ 0.07
SHMT2-212ENST00000554467 METP08581 1390 aa15.49■□□□□ 0.07
SHMT2-212ENST00000554467 NPC1L1Q9UHC9 1359 aa15.49■□□□□ 0.07
SHMT2-212ENST00000554467 BLMP54132 1417 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-212ENST00000554467 GGNBP2Q9H3C7 697 aa15.49■□□□□ 0.07
SHMT2-212ENST00000554467 CABP1Q9NZU7 370 aa15.48■□□□□ 0.07
SHMT2-212ENST00000554467 CGNL1Q0VF96 1302 aa15.47■□□□□ 0.07
SHMT2-212ENST00000554467 A0A1W2PP64 1363 aa15.47■□□□□ 0.07
SHMT2-212ENST00000554467 APAF1O14727 1248 aa15.46■□□□□ 0.07
SHMT2-212ENST00000554467 LTKP29376 864 aa15.46■□□□□ 0.07
SHMT2-212ENST00000554467 NCKAP5LQ9HCH0 1330 aa15.46■□□□□ 0.06
SHMT2-212ENST00000554467 MTHFSP49914 203 aa15.46■□□□□ 0.06
SHMT2-212ENST00000554467 ANKRD36BQ8N2N9 1353 aa15.45■□□□□ 0.06
SHMT2-212ENST00000554467 SLC26A8Q96RN1 970 aa15.45■□□□□ 0.06
SHMT2-212ENST00000554467 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.44■□□□□ 0.06
SHMT2-212ENST00000554467 NUTM2FA1L443 756 aa15.44■□□□□ 0.06
SHMT2-212ENST00000554467 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.44■□□□□ 0.06
SHMT2-212ENST00000554467 CCDC136Q96JN2 1154 aa15.44■□□□□ 0.06
SHMT2-212ENST00000554467 RCAN3Q9UKA8 241 aa15.44■□□□□ 0.06
SHMT2-212ENST00000554467 FBLN1P23142 703 aa15.43■□□□□ 0.06
SHMT2-212ENST00000554467 NEUROD2Q15784 382 aa15.43■□□□□ 0.06
SHMT2-212ENST00000554467 PAK3O75914 559 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-212ENST00000554467 NBR1Q14596 966 aa15.43■□□□□ 0.06
SHMT2-212ENST00000554467 PPP4R2Q9NY27 417 aa15.43■□□□□ 0.06
SHMT2-212ENST00000554467 PLIN1O60240 522 aa15.43■□□□□ 0.06
SHMT2-212ENST00000554467 TMEM2Q9UHN6 1383 aa15.42■□□□□ 0.06
SHMT2-212ENST00000554467 RRP7AQ9Y3A4 280 aaKnown RBP15.42■□□□□ 0.06
SHMT2-212ENST00000554467 NRXN3Q9Y4C0 1643 aa15.41■□□□□ 0.06
SHMT2-212ENST00000554467 TERF2IPQ9NYB0 399 aa15.4■□□□□ 0.06
SHMT2-212ENST00000554467 FYB1O15117 783 aa15.4■□□□□ 0.06
SHMT2-212ENST00000554467 PDE3BQ13370 1112 aa15.4■□□□□ 0.06
SHMT2-212ENST00000554467 SPINK5Q9NQ38 1064 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-212ENST00000554467 ATAD2Q6PL18 1390 aa15.4■□□□□ 0.06
SHMT2-212ENST00000554467 PUS7Q96PZ0 661 aaKnown RBP15.39■□□□□ 0.05
SHMT2-212ENST00000554467 DMRT2Q9Y5R5 561 aa15.39■□□□□ 0.05
SHMT2-212ENST00000554467 SETD1AO15047 1707 aaKnown RBP15.39■□□□□ 0.05
SHMT2-212ENST00000554467 HDGFP51858 240 aaKnown RBP15.39■□□□□ 0.05
SHMT2-212ENST00000554467 RRP1P56182 461 aaKnown RBP15.39■□□□□ 0.05
SHMT2-212ENST00000554467 RNF123Q5XPI4 1314 aa15.39■□□□□ 0.05
SHMT2-212ENST00000554467 CD163L1Q9NR16 1453 aa15.38■□□□□ 0.05
SHMT2-212ENST00000554467 UBR1Q8IWV7 1749 aa15.38■□□□□ 0.05
SHMT2-212ENST00000554467 HDGFL2Q7Z4V5 671 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-212ENST00000554467 ABCC11Q96J66 1382 aa15.38■□□□□ 0.05
SHMT2-212ENST00000554467 IL27Q8NEV9 243 aa15.38■□□□□ 0.05
SHMT2-212ENST00000554467 PPM1GO15355 546 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-212ENST00000554467 POLR3AO14802 1390 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-212ENST00000554467 WASLO00401 505 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-212ENST00000554467 GOLGA2Q08379 1002 aa15.36■□□□□ 0.05
SHMT2-212ENST00000554467 ZRANB1Q9UGI0 708 aa15.36■□□□□ 0.05
SHMT2-212ENST00000554467 ROBO2Q9HCK4 1378 aa15.36■□□□□ 0.05
SHMT2-212ENST00000554467 EXOC6Q8TAG9 804 aa15.36■□□□□ 0.05
SHMT2-212ENST00000554467 U2SURPO15042 1029 aaKnown RBP15.35■□□□□ 0.05
SHMT2-212ENST00000554467 U2AF1L5P0DN76 240 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-212ENST00000554467 U2AF1Q01081 240 aaKnown RBP eCLIP15.35■□□□□ 0.05
SHMT2-212ENST00000554467 C3P01024 1663 aa15.35■□□□□ 0.05
SHMT2-212ENST00000554467 INSRP06213 1382 aa15.35■□□□□ 0.05
SHMT2-212ENST00000554467 DUSP27Q5VZP5 1158 aa15.34■□□□□ 0.05
SHMT2-212ENST00000554467 EID1Q9Y6B2 187 aa15.34■□□□□ 0.05
SHMT2-212ENST00000554467 NUDT16Q96DE0 195 aaKnown RBP15.34■□□□□ 0.05
SHMT2-212ENST00000554467 CFAP53Q96M91 514 aa15.34■□□□□ 0.05
SHMT2-212ENST00000554467 NOP58Q9Y2X3 529 aaKnown RBP15.34■□□□□ 0.05
SHMT2-212ENST00000554467 ZNF521Q96K83 1311 aa15.34■□□□□ 0.05
SHMT2-212ENST00000554467 ADAMTS13Q76LX8 1427 aa15.34■□□□□ 0.05
SHMT2-212ENST00000554467 ERICH6BQ5W0A0 696 aa15.34■□□□□ 0.05
SHMT2-212ENST00000554467 FER1L4A9Z1Z3 1794 aa15.34■□□□□ 0.05
SHMT2-212ENST00000554467 NINLQ9Y2I6 1382 aa15.32■□□□□ 0.04
SHMT2-212ENST00000554467 NME9Q86XW9 330 aa15.32■□□□□ 0.04
SHMT2-212ENST00000554467 PPIP5K1Q6PFW1 1433 aa15.32■□□□□ 0.04
SHMT2-212ENST00000554467 DLC1Q96QB1 1528 aa15.32■□□□□ 0.04
SHMT2-212ENST00000554467 TCP11L2Q8N4U5 519 aa15.32■□□□□ 0.04
SHMT2-212ENST00000554467 USP32Q8NFA0 1604 aa15.31■□□□□ 0.04
SHMT2-212ENST00000554467 SHPRHQ149N8 1683 aa15.31■□□□□ 0.04
SHMT2-212ENST00000554467 C20orf194Q5TEA3 1177 aa15.31■□□□□ 0.04
SHMT2-212ENST00000554467 PRR36Q9H6K5 1346 aa15.31■□□□□ 0.04
SHMT2-212ENST00000554467 SLFN5Q08AF3 891 aa15.31■□□□□ 0.04
SHMT2-212ENST00000554467 NSD2O96028 1365 aa15.31■□□□□ 0.04
SHMT2-212ENST00000554467 NLRP1Q9C000 1473 aa15.3■□□□□ 0.04
SHMT2-212ENST00000554467 RTN4Q9NQC3 1192 aaKnown RBP15.3■□□□□ 0.04
SHMT2-212ENST00000554467 AMOTL2Q9Y2J4 779 aa15.3■□□□□ 0.04
SHMT2-212ENST00000554467 PLEKHG1Q9ULL1 1385 aa15.29■□□□□ 0.04
SHMT2-212ENST00000554467 PTPRUQ92729 1446 aa15.29■□□□□ 0.04
SHMT2-212ENST00000554467 WWC1Q8IX03 1113 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms