RNA–Protein interactions for RNA: ENST00000550987.5

CPSF6-206, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-206ENST00000550987 RANGAP1P46060 587 aaPredicted RBP9.3□□□□□ -0.92
CPSF6-206ENST00000550987 GRIPAP1Q4V328 841 aa9.3□□□□□ -0.92
CPSF6-206ENST00000550987 SWT1Q5T5J6 900 aaKnown RBP9.3□□□□□ -0.92
CPSF6-206ENST00000550987 NDUFB9Q9Y6M9 179 aa9.3□□□□□ -0.92
CPSF6-206ENST00000550987 HELBQ8NG08 1087 aaPredicted RBP9.28□□□□□ -0.92
CPSF6-206ENST00000550987 GLMNQ92990 594 aa9.28□□□□□ -0.92
CPSF6-206ENST00000550987 ZBED2Q9BTP6 218 aa9.28□□□□□ -0.92
CPSF6-206ENST00000550987 KIF21AQ7Z4S6 1674 aa9.28□□□□□ -0.92
CPSF6-206ENST00000550987 C6orf229H3BNL8 230 aa9.27□□□□□ -0.93
CPSF6-206ENST00000550987 PSEN2P49810 448 aa9.27□□□□□ -0.93
CPSF6-206ENST00000550987 CTDSPL2Q05D32 466 aa9.27□□□□□ -0.93
CPSF6-206ENST00000550987 MTMR2Q13614 643 aa9.27□□□□□ -0.93
CPSF6-206ENST00000550987 POM121CA8CG34 1229 aa9.26□□□□□ -0.93
CPSF6-206ENST00000550987 PPP1R15AO75807 674 aaPredicted RBP9.26□□□□□ -0.93
CPSF6-206ENST00000550987 SLC10A3P09131 477 aa9.26□□□□□ -0.93
CPSF6-206ENST00000550987 GUCA2AQ02747 115 aa9.26□□□□□ -0.93
CPSF6-206ENST00000550987 WASHC4Q2M389 1173 aa9.26□□□□□ -0.93
CPSF6-206ENST00000550987 AEBP1Q8IUX7 1158 aa9.26□□□□□ -0.93
CPSF6-206ENST00000550987 KCTD17Q8N5Z5 321 aa9.26□□□□□ -0.93
CPSF6-206ENST00000550987 TRAIPQ9BWF2 469 aa9.26□□□□□ -0.93
CPSF6-206ENST00000550987 SEPT9Q9UHD8 586 aaPredicted RBP9.26□□□□□ -0.93
CPSF6-206ENST00000550987 RABGEF1Q9UJ41 708 aa9.26□□□□□ -0.93
CPSF6-206ENST00000550987 RNF40O75150 1001 aa9.25□□□□□ -0.93
CPSF6-206ENST00000550987 HDGFL1Q5TGJ6 251 aa9.25□□□□□ -0.93
CPSF6-206ENST00000550987 SLF2Q8IX21 1173 aa9.25□□□□□ -0.93
CPSF6-206ENST00000550987 PCDHGC3Q9UN70 934 aa9.25□□□□□ -0.93
CPSF6-206ENST00000550987 CCDC9Q9Y3X0 531 aaKnown RBP9.25□□□□□ -0.93
CPSF6-206ENST00000550987 ARHGAP33O14559 1287 aa9.24□□□□□ -0.93
CPSF6-206ENST00000550987 PDE4CQ08493 712 aa9.24□□□□□ -0.93
CPSF6-206ENST00000550987 HLA-CQ95604 372 aa9.24□□□□□ -0.93
CPSF6-206ENST00000550987 ERBB3P21860 1342 aa9.24□□□□□ -0.93
CPSF6-206ENST00000550987 FAM98CQ17RN3 349 aaKnown RBP9.22□□□□□ -0.93
CPSF6-206ENST00000550987 RETREG2Q8NC44 543 aa9.22□□□□□ -0.93
CPSF6-206ENST00000550987 NECTIN2Q92692 538 aa9.22□□□□□ -0.93
CPSF6-206ENST00000550987 GJD4Q96KN9 370 aaPredicted RBP9.22□□□□□ -0.93
CPSF6-206ENST00000550987 FUT2Q10981 343 aa9.21□□□□□ -0.94
CPSF6-206ENST00000550987 LRRN4Q8WUT4 740 aa9.21□□□□□ -0.94
CPSF6-206ENST00000550987 CFHP08603 1231 aa9.2□□□□□ -0.94
CPSF6-206ENST00000550987 RFX1P22670 979 aa9.2□□□□□ -0.94
CPSF6-206ENST00000550987 ATP6V1AP38606 617 aa9.2□□□□□ -0.94
CPSF6-206ENST00000550987 SAMD7Q7Z3H4 446 aa9.2□□□□□ -0.94
CPSF6-206ENST00000550987 HMX1Q9NP08 348 aaPredicted RBP9.2□□□□□ -0.94
CPSF6-206ENST00000550987 IRF5Q13568 498 aa9.19□□□□□ -0.94
CPSF6-206ENST00000550987 KMT5BQ4FZB7 885 aa9.19□□□□□ -0.94
CPSF6-206ENST00000550987 VARS2Q5ST30 1063 aaKnown RBP9.19□□□□□ -0.94
CPSF6-206ENST00000550987 NPM2Q86SE8 214 aaKnown RBP9.19□□□□□ -0.94
CPSF6-206ENST00000550987 SLC4A5Q9BY07 1137 aa9.19□□□□□ -0.94
CPSF6-206ENST00000550987 AXIN2Q9Y2T1 843 aa9.19□□□□□ -0.94
CPSF6-206ENST00000550987 ADGRL1O94910 1474 aa9.18□□□□□ -0.94
CPSF6-206ENST00000550987 VAC14Q08AM6 782 aa9.18□□□□□ -0.94
CPSF6-206ENST00000550987 PNMA1Q8ND90 353 aa9.18□□□□□ -0.94
CPSF6-206ENST00000550987 NBPF3Q9H094 633 aa9.18□□□□□ -0.94
CPSF6-206ENST00000550987 CFAP99D6REC4 459 aa9.17□□□□□ -0.94
CPSF6-206ENST00000550987 TRIM34Q9BYJ4 488 aa9.17□□□□□ -0.94
CPSF6-206ENST00000550987 DMRTA1Q5VZB9 504 aa9.16□□□□□ -0.94
CPSF6-206ENST00000550987 LAPTM4BQ86VI4 370 aa9.16□□□□□ -0.94
CPSF6-206ENST00000550987 PRR7Q8TB68 274 aa9.16□□□□□ -0.94
CPSF6-206ENST00000550987 SYMPKQ92797 1274 aaKnown RBP9.16□□□□□ -0.94
CPSF6-206ENST00000550987 PBX2P40425 430 aa9.15□□□□□ -0.94
CPSF6-206ENST00000550987 IFFO2Q5TF58 517 aa9.15□□□□□ -0.94
CPSF6-206ENST00000550987 PBXIP1Q96AQ6 731 aa9.15□□□□□ -0.94
CPSF6-206ENST00000550987 VPS9D1Q9Y2B5 631 aa9.15□□□□□ -0.94
CPSF6-206ENST00000550987 SEMA3FQ13275 785 aa9.14□□□□□ -0.95
CPSF6-206ENST00000550987 Q3C1V9 767 aa9.14□□□□□ -0.95
CPSF6-206ENST00000550987 WDR62O43379 1518 aa9.14□□□□□ -0.95
CPSF6-206ENST00000550987 CSB-PGBD3P0DP91 1061 aa9.13□□□□□ -0.95
CPSF6-206ENST00000550987 NR6A1Q15406 480 aa9.13□□□□□ -0.95
CPSF6-206ENST00000550987 PPP1R12CQ9BZL4 782 aa9.13□□□□□ -0.95
CPSF6-206ENST00000550987 SOX11P35716 441 aa9.12□□□□□ -0.95
CPSF6-206ENST00000550987 MRPL50Q8N5N7 158 aaKnown RBP9.12□□□□□ -0.95
CPSF6-206ENST00000550987 ADAMTS19Q8TE59 1207 aa9.12□□□□□ -0.95
CPSF6-206ENST00000550987 EPS8L1Q8TE68 723 aa9.12□□□□□ -0.95
CPSF6-206ENST00000550987 ZFRQ96KR1 1074 aaKnown RBP9.12□□□□□ -0.95
CPSF6-206ENST00000550987 STAC3Q96MF2 364 aa9.12□□□□□ -0.95
CPSF6-206ENST00000550987 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.11□□□□□ -0.95
CPSF6-206ENST00000550987 LMOD1P29536 600 aaPredicted RBP9.11□□□□□ -0.95
CPSF6-206ENST00000550987 EMP3P54852 163 aa9.11□□□□□ -0.95
CPSF6-206ENST00000550987 PUS10Q3MIT2 529 aaKnown RBP9.11□□□□□ -0.95
CPSF6-206ENST00000550987 RETREG3Q86VR2 466 aa9.11□□□□□ -0.95
CPSF6-206ENST00000550987 LRCH3Q96II8 777 aa9.11□□□□□ -0.95
CPSF6-206ENST00000550987 ALG2Q9H553 416 aa9.11□□□□□ -0.95
CPSF6-206ENST00000550987 EIF4G2P78344 907 aaKnown RBP eCLIP9.1□□□□□ -0.95
CPSF6-206ENST00000550987 POTEEQ6S8J3 1075 aa9.1□□□□□ -0.95
CPSF6-206ENST00000550987 TFIP11Q9UBB9 837 aaKnown RBP9.1□□□□□ -0.95
CPSF6-206ENST00000550987 PALM3A6NDB9 673 aaPredicted RBP9.09□□□□□ -0.95
CPSF6-206ENST00000550987 GOLGA8CPA6NN73 597 aa9.09□□□□□ -0.95
CPSF6-206ENST00000550987 PER1O15534 1290 aaPredicted RBP9.09□□□□□ -0.95
CPSF6-206ENST00000550987 MORN1Q5T089 497 aa9.09□□□□□ -0.95
CPSF6-206ENST00000550987 PRR14Q9BWN1 585 aa9.09□□□□□ -0.95
CPSF6-206ENST00000550987 GZF1Q9H116 711 aaPredicted RBP9.09□□□□□ -0.95
CPSF6-206ENST00000550987 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.09□□□□□ -0.95
CPSF6-206ENST00000550987 SLC27A5Q9Y2P5 690 aa9.09□□□□□ -0.95
CPSF6-206ENST00000550987 RSF1Q96T23 1441 aaPredicted RBP9.08□□□□□ -0.96
CPSF6-206ENST00000550987 PATL2C9JE40 543 aaKnown RBP9.08□□□□□ -0.96
CPSF6-206ENST00000550987 CFAP70Q5T0N1 1121 aa9.08□□□□□ -0.96
CPSF6-206ENST00000550987 FAM205CA6NFA0 338 aa9.07□□□□□ -0.96
CPSF6-206ENST00000550987 ACTN4O43707 911 aaKnown RBP9.07□□□□□ -0.96
CPSF6-206ENST00000550987 ZNF687Q8N1G0 1237 aa9.07□□□□□ -0.96
CPSF6-206ENST00000550987 OTUD5Q96G74 571 aa9.07□□□□□ -0.96
CPSF6-206ENST00000550987 KIF13AQ9H1H9 1805 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms