RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 ATF3P18847 181 aa23.14■■□□□ 1.29
CHMP1A-209ENST00000550872 TRPM1Q7Z4N2 1603 aa23.14■■□□□ 1.29
CHMP1A-209ENST00000550872 FAM135BQ49AJ0 1406 aa23.14■■□□□ 1.29
CHMP1A-209ENST00000550872 SAFB2Q14151 953 aaKnown RBP eCLIP23.13■■□□□ 1.29
CHMP1A-209ENST00000550872 ADGRL3Q9HAR2 1447 aa23.13■■□□□ 1.29
CHMP1A-209ENST00000550872 DLC1Q96QB1 1528 aa23.13■■□□□ 1.29
CHMP1A-209ENST00000550872 CADPS2Q86UW7 1296 aa23.12■■□□□ 1.29
CHMP1A-209ENST00000550872 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.1■■□□□ 1.29
CHMP1A-209ENST00000550872 CARD11Q9BXL7 1154 aa23.08■■□□□ 1.29
CHMP1A-209ENST00000550872 SLAIN2Q9P270 581 aa23.08■■□□□ 1.29
CHMP1A-209ENST00000550872 RALGAPBQ86X10 1494 aa23.07■■□□□ 1.28
CHMP1A-209ENST00000550872 NALCNQ8IZF0 1738 aa23.07■■□□□ 1.28
CHMP1A-209ENST00000550872 DCCP43146 1447 aa23.07■■□□□ 1.28
CHMP1A-209ENST00000550872 GPRASP1Q5JY77 1395 aa23.06■■□□□ 1.28
CHMP1A-209ENST00000550872 MED1Q15648 1581 aaPredicted RBP23.05■■□□□ 1.28
CHMP1A-209ENST00000550872 MINK1Q8N4C8 1332 aaPredicted RBP23.05■■□□□ 1.28
CHMP1A-209ENST00000550872 ARHGEF28Q8N1W1 1705 aaKnown RBP23.04■■□□□ 1.28
CHMP1A-209ENST00000550872 HIRIP3Q9BW71 556 aaPredicted RBP23.02■■□□□ 1.28
CHMP1A-209ENST00000550872 CENPJQ9HC77 1338 aaPredicted RBP23.01■■□□□ 1.27
CHMP1A-209ENST00000550872 MST1RQ04912 1400 aa22.99■■□□□ 1.27
CHMP1A-209ENST00000550872 NUTM2FA1L443 756 aa22.99■■□□□ 1.27
CHMP1A-209ENST00000550872 EIF3AQ14152 1382 aaKnown RBP22.99■■□□□ 1.27
CHMP1A-209ENST00000550872 CDC42BPGQ6DT37 1551 aa22.98■■□□□ 1.27
CHMP1A-209ENST00000550872 WASLO00401 505 aaPredicted RBP22.95■■□□□ 1.26
CHMP1A-209ENST00000550872 C1orf167Q5SNV9 1468 aa22.95■■□□□ 1.26
CHMP1A-209ENST00000550872 BRINP3Q76B58 766 aa22.94■■□□□ 1.26
CHMP1A-209ENST00000550872 ROBO1Q9Y6N7 1651 aa22.93■■□□□ 1.26
CHMP1A-209ENST00000550872 ADGRB2O60241 1585 aa22.93■■□□□ 1.26
CHMP1A-209ENST00000550872 ESCO1Q5FWF5 840 aa22.92■■□□□ 1.26
CHMP1A-209ENST00000550872 ORAI2Q96SN7 254 aa22.92■■□□□ 1.26
CHMP1A-209ENST00000550872 CDK19Q9BWU1 502 aa22.91■■□□□ 1.26
CHMP1A-209ENST00000550872 FMN2Q9NZ56 1722 aa22.91■■□□□ 1.26
CHMP1A-209ENST00000550872 PHF23Q9BUL5 403 aaPredicted RBP22.9■■□□□ 1.26
CHMP1A-209ENST00000550872 QRICH2Q9H0J4 1663 aa22.9■■□□□ 1.26
CHMP1A-209ENST00000550872 ST20-MTHFSA0A0A6YYL1 179 aa22.88■■□□□ 1.25
CHMP1A-209ENST00000550872 USP47Q96K76 1375 aa22.88■■□□□ 1.25
CHMP1A-209ENST00000550872 ANKARQ7Z5J8 1434 aa22.86■■□□□ 1.25
CHMP1A-209ENST00000550872 SRPK2P78362 688 aaKnown RBP22.86■■□□□ 1.25
CHMP1A-209ENST00000550872 EVC2Q86UK5 1308 aa22.85■■□□□ 1.25
CHMP1A-209ENST00000550872 NUDT16Q96DE0 195 aaKnown RBP22.85■■□□□ 1.25
CHMP1A-209ENST00000550872 PRR36Q9H6K5 1346 aa22.84■■□□□ 1.25
CHMP1A-209ENST00000550872 TULP4Q9NRJ4 1543 aa22.84■■□□□ 1.25
CHMP1A-209ENST00000550872 DDX17Q92841 729 aaKnown RBP22.84■■□□□ 1.25
CHMP1A-209ENST00000550872 CABP2Q9NPB3 220 aa22.84■■□□□ 1.25
CHMP1A-209ENST00000550872 PHF8Q9UPP1 1060 aa22.83■■□□□ 1.25
CHMP1A-209ENST00000550872 RGPD8O14715 1765 aaPredicted RBP22.83■■□□□ 1.24
CHMP1A-209ENST00000550872 SBNO2Q9Y2G9 1366 aa22.82■■□□□ 1.24
CHMP1A-209ENST00000550872 FOXO3O43524 673 aa22.81■■□□□ 1.24
CHMP1A-209ENST00000550872 PMFBP1Q8TBY8 1022 aa22.81■■□□□ 1.24
CHMP1A-209ENST00000550872 USP32Q8NFA0 1604 aa22.8■■□□□ 1.24
CHMP1A-209ENST00000550872 TESK2Q96S53 571 aa22.8■■□□□ 1.24
CHMP1A-209ENST00000550872 PHLPP1O60346 1717 aa22.79■■□□□ 1.24
CHMP1A-209ENST00000550872 SLC24A1O60721 1099 aa22.79■■□□□ 1.24
CHMP1A-209ENST00000550872 EIF4G2P78344 907 aaKnown RBP eCLIP22.79■■□□□ 1.24
CHMP1A-209ENST00000550872 CCDC61Q9Y6R9 512 aa22.79■■□□□ 1.24
CHMP1A-209ENST00000550872 NPHP3Q7Z494 1330 aa22.79■■□□□ 1.24
CHMP1A-209ENST00000550872 AHDC1Q5TGY3 1603 aaPredicted RBP22.79■■□□□ 1.24
CHMP1A-209ENST00000550872 ATP7BP35670 1465 aa22.78■■□□□ 1.24
CHMP1A-209ENST00000550872 HSPA5P11021 654 aaKnown RBP22.76■■□□□ 1.23
CHMP1A-209ENST00000550872 XPCQ01831 940 aaPredicted RBP22.76■■□□□ 1.23
CHMP1A-209ENST00000550872 NGDNQ8NEJ9 315 aaKnown RBP22.76■■□□□ 1.23
CHMP1A-209ENST00000550872 NHSL1Q5SYE7 1610 aa22.75■■□□□ 1.23
CHMP1A-209ENST00000550872 KIF1AQ12756 1690 aa22.75■■□□□ 1.23
CHMP1A-209ENST00000550872 TMF1P82094 1093 aa22.74■■□□□ 1.23
CHMP1A-209ENST00000550872 PSME1Q06323 249 aa22.74■■□□□ 1.23
CHMP1A-209ENST00000550872 KRT28Q7Z3Y7 464 aa22.74■■□□□ 1.23
CHMP1A-209ENST00000550872 LRRC59Q96AG4 307 aaKnown RBP22.74■■□□□ 1.23
CHMP1A-209ENST00000550872 SOS2Q07890 1332 aaPredicted RBP22.74■■□□□ 1.23
CHMP1A-209ENST00000550872 RGS17Q9UGC6 210 aaPredicted RBP22.73■■□□□ 1.23
CHMP1A-209ENST00000550872 COL16A1Q07092 1604 aaPredicted RBP22.72■■□□□ 1.23
CHMP1A-209ENST00000550872 ITSN1Q15811 1721 aa22.72■■□□□ 1.23
CHMP1A-209ENST00000550872 PLEKHG3A1L390 1219 aa22.72■■□□□ 1.23
CHMP1A-209ENST00000550872 CABP1Q9NZU7 370 aa22.72■■□□□ 1.23
CHMP1A-209ENST00000550872 ATAD2Q6PL18 1390 aa22.71■■□□□ 1.23
CHMP1A-209ENST00000550872 PPIP5K1Q6PFW1 1433 aa22.71■■□□□ 1.23
CHMP1A-209ENST00000550872 PUS7Q96PZ0 661 aaKnown RBP22.7■■□□□ 1.22
CHMP1A-209ENST00000550872 ACEP12821 1306 aa22.7■■□□□ 1.22
CHMP1A-209ENST00000550872 JCADQ9P266 1359 aa22.69■■□□□ 1.22
CHMP1A-209ENST00000550872 PXDNQ92626 1479 aa22.68■■□□□ 1.22
CHMP1A-209ENST00000550872 TOPAZ1Q8N9V7 1692 aa22.68■■□□□ 1.22
CHMP1A-209ENST00000550872 CDCA8Q53HL2 280 aa22.67■■□□□ 1.22
CHMP1A-209ENST00000550872 TMC1Q8TDI8 760 aa22.67■■□□□ 1.22
CHMP1A-209ENST00000550872 ZEB1P37275 1124 aaPredicted RBP22.66■■□□□ 1.22
CHMP1A-209ENST00000550872 POLR3AO14802 1390 aaPredicted RBP22.65■■□□□ 1.22
CHMP1A-209ENST00000550872 SPATA31A3Q5VYP0 1347 aa22.63■■□□□ 1.21
CHMP1A-209ENST00000550872 PAK3O75914 559 aaPredicted RBP22.63■■□□□ 1.21
CHMP1A-209ENST00000550872 LMOD2Q6P5Q4 547 aa22.63■■□□□ 1.21
CHMP1A-209ENST00000550872 SLC12A5Q9H2X9 1139 aa22.63■■□□□ 1.21
CHMP1A-209ENST00000550872 SBNO1A3KN83 1393 aa22.63■■□□□ 1.21
CHMP1A-209ENST00000550872 PNPLA6Q8IY17 1366 aa22.62■■□□□ 1.21
CHMP1A-209ENST00000550872 ZNF692Q9BU19 519 aaPredicted RBP22.61■■□□□ 1.21
CHMP1A-209ENST00000550872 POLR3GLQ9BT43 218 aa22.6■■□□□ 1.21
CHMP1A-209ENST00000550872 SPATA31A6Q5VVP1 1343 aa22.59■■□□□ 1.21
CHMP1A-209ENST00000550872 SHPRHQ149N8 1683 aa22.58■■□□□ 1.21
CHMP1A-209ENST00000550872 TNS3Q68CZ2 1445 aa22.58■■□□□ 1.21
CHMP1A-209ENST00000550872 NUTM2BA6NNL0 878 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-209ENST00000550872 NUTM2EB1AL46 878 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-209ENST00000550872 POTEAQ6S8J7 498 aa22.58■■□□□ 1.21
CHMP1A-209ENST00000550872 HDGFL2Q7Z4V5 671 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-209ENST00000550872 NUTM2AQ8IVF1 878 aaPredicted RBP22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms