RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 NUTM2BA6NNL0 878 aaPredicted RBP10.87□□□□□ -0.67
DEPDC4-208ENST00000549341 NUTM2EB1AL46 878 aaPredicted RBP10.87□□□□□ -0.67
DEPDC4-208ENST00000549341 NUTM2AQ8IVF1 878 aaPredicted RBP10.87□□□□□ -0.67
DEPDC4-208ENST00000549341 PIK3C2BO00750 1634 aa10.87□□□□□ -0.67
DEPDC4-208ENST00000549341 EIF2AK4Q9P2K8 1649 aaKnown RBP10.87□□□□□ -0.67
DEPDC4-208ENST00000549341 PLCG2P16885 1265 aa10.86□□□□□ -0.67
DEPDC4-208ENST00000549341 COL16A1Q07092 1604 aaPredicted RBP10.86□□□□□ -0.67
DEPDC4-208ENST00000549341 ARHGAP31Q2M1Z3 1444 aa10.85□□□□□ -0.67
DEPDC4-208ENST00000549341 FAM212AQ96EL1 285 aa10.85□□□□□ -0.67
DEPDC4-208ENST00000549341 KIF15Q9NS87 1388 aa10.85□□□□□ -0.67
DEPDC4-208ENST00000549341 NWD1Q149M9 1564 aa10.85□□□□□ -0.67
DEPDC4-208ENST00000549341 FGD6Q6ZV73 1430 aa10.84□□□□□ -0.67
DEPDC4-208ENST00000549341 VPS8Q8N3P4 1428 aa10.84□□□□□ -0.67
DEPDC4-208ENST00000549341 PPP1R15AO75807 674 aaPredicted RBP10.84□□□□□ -0.67
DEPDC4-208ENST00000549341 NUBP1P53384 320 aa10.84□□□□□ -0.67
DEPDC4-208ENST00000549341 IFNL1Q8IU54 200 aa10.84□□□□□ -0.67
DEPDC4-208ENST00000549341 TMEM106CQ9BVX2 250 aa10.84□□□□□ -0.67
DEPDC4-208ENST00000549341 MAST1Q9Y2H9 1570 aa10.84□□□□□ -0.67
DEPDC4-208ENST00000549341 DUOX2Q9NRD8 1548 aa10.84□□□□□ -0.67
DEPDC4-208ENST00000549341 RGS12O14924 1447 aa10.84□□□□□ -0.67
DEPDC4-208ENST00000549341 TRIM26Q12899 539 aaPredicted RBP10.83□□□□□ -0.68
DEPDC4-208ENST00000549341 AFF2P51816 1311 aa10.83□□□□□ -0.68
DEPDC4-208ENST00000549341 KANK1Q14678 1352 aa10.82□□□□□ -0.68
DEPDC4-208ENST00000549341 ST18O60284 1047 aa10.82□□□□□ -0.68
DEPDC4-208ENST00000549341 IDI1Q13907 227 aa10.82□□□□□ -0.68
DEPDC4-208ENST00000549341 NUTM2DQ5VT03 806 aaPredicted RBP10.82□□□□□ -0.68
DEPDC4-208ENST00000549341 ADGRB3O60242 1522 aa10.82□□□□□ -0.68
DEPDC4-208ENST00000549341 CDK12Q9NYV4 1490 aaPredicted RBP10.81□□□□□ -0.68
DEPDC4-208ENST00000549341 RRP7BPQ9NSQ0 103 aa10.81□□□□□ -0.68
DEPDC4-208ENST00000549341 TET3O43151 1660 aa10.81□□□□□ -0.68
DEPDC4-208ENST00000549341 ERBINQ96RT1 1412 aa10.81□□□□□ -0.68
DEPDC4-208ENST00000549341 ATF3P18847 181 aa10.8□□□□□ -0.68
DEPDC4-208ENST00000549341 C8orf37Q96NL8 207 aa10.8□□□□□ -0.68
DEPDC4-208ENST00000549341 KDM5AP29375 1690 aaKnown RBP10.79□□□□□ -0.68
DEPDC4-208ENST00000549341 AHDC1Q5TGY3 1603 aaPredicted RBP10.79□□□□□ -0.68
DEPDC4-208ENST00000549341 CADPS2Q86UW7 1296 aa10.78□□□□□ -0.68
DEPDC4-208ENST00000549341 TMEM121BQ9BXQ6 578 aaPredicted RBP10.78□□□□□ -0.68
DEPDC4-208ENST00000549341 PLEKHG1Q9ULL1 1385 aa10.77□□□□□ -0.68
DEPDC4-208ENST00000549341 MYOM3Q5VTT5 1437 aa10.77□□□□□ -0.68
DEPDC4-208ENST00000549341 SNPHO15079 494 aa10.77□□□□□ -0.69
DEPDC4-208ENST00000549341 IRX5P78411 483 aaPredicted RBP10.77□□□□□ -0.69
DEPDC4-208ENST00000549341 BRINP3Q76B58 766 aa10.77□□□□□ -0.69
DEPDC4-208ENST00000549341 RIMS2Q9UQ26 1411 aa10.76□□□□□ -0.69
DEPDC4-208ENST00000549341 SHPRHQ149N8 1683 aa10.76□□□□□ -0.69
DEPDC4-208ENST00000549341 ATAD2Q6PL18 1390 aa10.76□□□□□ -0.69
DEPDC4-208ENST00000549341 CFAP65Q6ZU64 1925 aaKnown RBP10.76□□□□□ -0.69
DEPDC4-208ENST00000549341 RBM6P78332 1123 aaKnown RBP10.75□□□□□ -0.69
DEPDC4-208ENST00000549341 OCEL1Q9H607 264 aa10.75□□□□□ -0.69
DEPDC4-208ENST00000549341 QTRT2Q9H974 415 aaKnown RBP10.75□□□□□ -0.69
DEPDC4-208ENST00000549341 ZFYVE9O95405 1425 aa10.75□□□□□ -0.69
DEPDC4-208ENST00000549341 NOS1P29475 1434 aa10.75□□□□□ -0.69
DEPDC4-208ENST00000549341 DIP2AQ14689 1571 aa10.74□□□□□ -0.69
DEPDC4-208ENST00000549341 ADAMTS2O95450 1211 aa10.74□□□□□ -0.69
DEPDC4-208ENST00000549341 CHGAP10645 457 aaKnown RBP10.74□□□□□ -0.69
DEPDC4-208ENST00000549341 PCGF6Q9BYE7 350 aa10.74□□□□□ -0.69
DEPDC4-208ENST00000549341 C19orf44Q9H6X5 657 aa10.74□□□□□ -0.69
DEPDC4-208ENST00000549341 ABCC5O15440 1437 aa10.74□□□□□ -0.69
DEPDC4-208ENST00000549341 LMTK2Q8IWU2 1503 aa10.74□□□□□ -0.69
DEPDC4-208ENST00000549341 ASXL1Q8IXJ9 1541 aa10.74□□□□□ -0.69
DEPDC4-208ENST00000549341 NCOA3Q9Y6Q9 1424 aa10.73□□□□□ -0.69
DEPDC4-208ENST00000549341 SETBP1Q9Y6X0 1596 aa10.73□□□□□ -0.69
DEPDC4-208ENST00000549341 DDX17Q92841 729 aaKnown RBP10.72□□□□□ -0.69
DEPDC4-208ENST00000549341 SLC52A1Q9NWF4 448 aa10.72□□□□□ -0.69
DEPDC4-208ENST00000549341 CHIC2Q9UKJ5 165 aa10.72□□□□□ -0.69
DEPDC4-208ENST00000549341 KANK4Q5T7N3 995 aaPredicted RBP10.71□□□□□ -0.69
DEPDC4-208ENST00000549341 EP400Q96L91 3159 aa10.71□□□□□ -0.69
DEPDC4-208ENST00000549341 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.71□□□□□ -0.69
DEPDC4-208ENST00000549341 DAPK1P53355 1430 aa10.7□□□□□ -0.7
DEPDC4-208ENST00000549341 ADAMTS13Q76LX8 1427 aa10.7□□□□□ -0.7
DEPDC4-208ENST00000549341 SETD5Q9C0A6 1442 aa10.7□□□□□ -0.7
DEPDC4-208ENST00000549341 PNPLA6Q8IY17 1366 aa10.7□□□□□ -0.7
DEPDC4-208ENST00000549341 NGLY1Q96IV0 654 aa10.7□□□□□ -0.7
DEPDC4-208ENST00000549341 TBX22Q9Y458 520 aa10.7□□□□□ -0.7
DEPDC4-208ENST00000549341 ANKRD30AQ9BXX3 1397 aa10.69□□□□□ -0.7
DEPDC4-208ENST00000549341 HDGFP51858 240 aaKnown RBP10.69□□□□□ -0.7
DEPDC4-208ENST00000549341 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.69□□□□□ -0.7
DEPDC4-208ENST00000549341 MST1RQ04912 1400 aa10.68□□□□□ -0.7
DEPDC4-208ENST00000549341 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.68□□□□□ -0.7
DEPDC4-208ENST00000549341 LRRC59Q96AG4 307 aaKnown RBP10.68□□□□□ -0.7
DEPDC4-208ENST00000549341 AMOTL2Q9Y2J4 779 aa10.68□□□□□ -0.7
DEPDC4-208ENST00000549341 CROCC2H7BZ55 1655 aa10.68□□□□□ -0.7
DEPDC4-208ENST00000549341 DCCP43146 1447 aa10.67□□□□□ -0.7
DEPDC4-208ENST00000549341 DCAF8Q5TAQ9 597 aa10.67□□□□□ -0.7
DEPDC4-208ENST00000549341 PPARGC1BQ86YN6 1023 aaKnown RBP10.67□□□□□ -0.7
DEPDC4-208ENST00000549341 USP21Q9UK80 565 aa10.67□□□□□ -0.7
DEPDC4-208ENST00000549341 PTPRUQ92729 1446 aa10.67□□□□□ -0.7
DEPDC4-208ENST00000549341 PIK3R4Q99570 1358 aa10.66□□□□□ -0.7
DEPDC4-208ENST00000549341 MMRN1Q13201 1228 aa10.66□□□□□ -0.7
DEPDC4-208ENST00000549341 TRPM2O94759 1503 aa10.66□□□□□ -0.7
DEPDC4-208ENST00000549341 RPRD2Q5VT52 1461 aaKnown RBP10.66□□□□□ -0.7
DEPDC4-208ENST00000549341 CHD2O14647 1828 aaKnown RBP10.65□□□□□ -0.7
DEPDC4-208ENST00000549341 SPNS2Q8IVW8 549 aa10.65□□□□□ -0.7
DEPDC4-208ENST00000549341 TRPC5Q9UL62 973 aaPredicted RBP10.65□□□□□ -0.7
DEPDC4-208ENST00000549341 GCC2Q8IWJ2 1684 aa10.65□□□□□ -0.7
DEPDC4-208ENST00000549341 PTPN23Q9H3S7 1636 aa10.65□□□□□ -0.7
DEPDC4-208ENST00000549341 TMEM131LA2VDJ0 1609 aa10.63□□□□□ -0.71
DEPDC4-208ENST00000549341 PYGBP11216 843 aa10.63□□□□□ -0.71
DEPDC4-208ENST00000549341 NHSL1Q5SYE7 1610 aa10.62□□□□□ -0.71
DEPDC4-208ENST00000549341 ATRNO75882 1429 aa10.62□□□□□ -0.71
DEPDC4-208ENST00000549341 ADGRL3Q9HAR2 1447 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms