RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 SETBP1Q9Y6X0 1596 aa11.47□□□□□ -0.57
DEPDC4-207ENST00000549249 NUTM2DQ5VT03 806 aaPredicted RBP11.47□□□□□ -0.57
DEPDC4-207ENST00000549249 ADGRB1O14514 1584 aa11.46□□□□□ -0.57
DEPDC4-207ENST00000549249 ASXL1Q8IXJ9 1541 aa11.46□□□□□ -0.57
DEPDC4-207ENST00000549249 USP47Q96K76 1375 aa11.46□□□□□ -0.57
DEPDC4-207ENST00000549249 GALR2O43603 387 aaPredicted RBP11.46□□□□□ -0.57
DEPDC4-207ENST00000549249 CERKQ8TCT0 537 aa11.46□□□□□ -0.57
DEPDC4-207ENST00000549249 HIRIP3Q9BW71 556 aaPredicted RBP11.46□□□□□ -0.57
DEPDC4-207ENST00000549249 SLIT1O75093 1534 aa11.45□□□□□ -0.58
DEPDC4-207ENST00000549249 ARHGAP23Q9P227 1491 aa11.45□□□□□ -0.58
DEPDC4-207ENST00000549249 EIF4G2P78344 907 aaKnown RBP eCLIP11.45□□□□□ -0.58
DEPDC4-207ENST00000549249 CFAP70Q5T0N1 1121 aa11.45□□□□□ -0.58
DEPDC4-207ENST00000549249 CARD11Q9BXL7 1154 aa11.45□□□□□ -0.58
DEPDC4-207ENST00000549249 TMEM2Q9UHN6 1383 aa11.44□□□□□ -0.58
DEPDC4-207ENST00000549249 VGFO15240 615 aaPredicted RBP11.44□□□□□ -0.58
DEPDC4-207ENST00000549249 ALKQ9UM73 1620 aa11.44□□□□□ -0.58
DEPDC4-207ENST00000549249 FBXO3Q9UK99 471 aa11.43□□□□□ -0.58
DEPDC4-207ENST00000549249 MIER1Q8N108 512 aa11.42□□□□□ -0.58
DEPDC4-207ENST00000549249 C14orf93Q9H972 538 aaKnown RBP11.42□□□□□ -0.58
DEPDC4-207ENST00000549249 ARHGEF28Q8N1W1 1705 aaKnown RBP11.42□□□□□ -0.58
DEPDC4-207ENST00000549249 SCAF11Q99590 1463 aaKnown RBP11.42□□□□□ -0.58
DEPDC4-207ENST00000549249 LTKP29376 864 aa11.39□□□□□ -0.59
DEPDC4-207ENST00000549249 MNX1P50219 401 aaPredicted RBP11.39□□□□□ -0.59
DEPDC4-207ENST00000549249 PLCD3Q8N3E9 789 aa11.39□□□□□ -0.59
DEPDC4-207ENST00000549249 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.39□□□□□ -0.59
DEPDC4-207ENST00000549249 PHF12Q96QT6 1004 aa11.39□□□□□ -0.59
DEPDC4-207ENST00000549249 ADAMTS13Q76LX8 1427 aa11.38□□□□□ -0.59
DEPDC4-207ENST00000549249 ST20-MTHFSA0A0A6YYL1 179 aa11.38□□□□□ -0.59
DEPDC4-207ENST00000549249 C11orf95C9JLR9 678 aaPredicted RBP11.38□□□□□ -0.59
DEPDC4-207ENST00000549249 PLEKHG1Q9ULL1 1385 aa11.38□□□□□ -0.59
DEPDC4-207ENST00000549249 KNDC1Q76NI1 1749 aa11.38□□□□□ -0.59
DEPDC4-207ENST00000549249 QRICH2Q9H0J4 1663 aa11.37□□□□□ -0.59
DEPDC4-207ENST00000549249 PLEKHG5O94827 1062 aa11.37□□□□□ -0.59
DEPDC4-207ENST00000549249 TMEM132EQ6IEE7 984 aa11.37□□□□□ -0.59
DEPDC4-207ENST00000549249 THEMISQ8N1K5 641 aaPredicted RBP11.37□□□□□ -0.59
DEPDC4-207ENST00000549249 MED14O60244 1454 aa11.37□□□□□ -0.59
DEPDC4-207ENST00000549249 WASHC2AQ641Q2 1341 aa11.36□□□□□ -0.59
DEPDC4-207ENST00000549249 TESK2Q96S53 571 aa11.36□□□□□ -0.59
DEPDC4-207ENST00000549249 CCDC7Q96M83 1385 aa11.36□□□□□ -0.59
DEPDC4-207ENST00000549249 TXNDC2Q86VQ3 553 aa11.35□□□□□ -0.59
DEPDC4-207ENST00000549249 YTHDC2Q9H6S0 1430 aaKnown RBP11.35□□□□□ -0.59
DEPDC4-207ENST00000549249 KIF7Q2M1P5 1343 aa11.35□□□□□ -0.59
DEPDC4-207ENST00000549249 DIP2AQ14689 1571 aa11.34□□□□□ -0.59
DEPDC4-207ENST00000549249 METP08581 1390 aa11.34□□□□□ -0.59
DEPDC4-207ENST00000549249 EIF3AQ14152 1382 aaKnown RBP11.34□□□□□ -0.59
DEPDC4-207ENST00000549249 HDGFP51858 240 aaKnown RBP11.34□□□□□ -0.59
DEPDC4-207ENST00000549249 DISP3Q9P2K9 1392 aa11.33□□□□□ -0.6
DEPDC4-207ENST00000549249 DIEXFQ68CQ4 756 aaKnown RBP11.33□□□□□ -0.6
DEPDC4-207ENST00000549249 TRAK1Q9UPV9 953 aa11.33□□□□□ -0.6
DEPDC4-207ENST00000549249 EID1Q9Y6B2 187 aa11.33□□□□□ -0.6
DEPDC4-207ENST00000549249 DLC1Q96QB1 1528 aa11.33□□□□□ -0.6
DEPDC4-207ENST00000549249 LRPPRCP42704 1394 aaKnown RBP11.32□□□□□ -0.6
DEPDC4-207ENST00000549249 CPS1P31327 1500 aa11.32□□□□□ -0.6
DEPDC4-207ENST00000549249 SBNO2Q9Y2G9 1366 aa11.31□□□□□ -0.6
DEPDC4-207ENST00000549249 MYOM1P52179 1685 aa11.31□□□□□ -0.6
DEPDC4-207ENST00000549249 TECPR2O15040 1411 aa11.31□□□□□ -0.6
DEPDC4-207ENST00000549249 PTPRUQ92729 1446 aa11.31□□□□□ -0.6
DEPDC4-207ENST00000549249 XRN1Q8IZH2 1706 aaKnown RBP11.31□□□□□ -0.6
DEPDC4-207ENST00000549249 VASPP50552 380 aaPredicted RBP11.3□□□□□ -0.6
DEPDC4-207ENST00000549249 DDX10Q13206 875 aaKnown RBP11.3□□□□□ -0.6
DEPDC4-207ENST00000549249 CENPJQ9HC77 1338 aaPredicted RBP11.3□□□□□ -0.6
DEPDC4-207ENST00000549249 CHD2O14647 1828 aaKnown RBP11.3□□□□□ -0.6
DEPDC4-207ENST00000549249 TULP4Q9NRJ4 1543 aa11.3□□□□□ -0.6
DEPDC4-207ENST00000549249 ABCC11Q96J66 1382 aa11.29□□□□□ -0.6
DEPDC4-207ENST00000549249 ANKLE2Q86XL3 938 aa11.29□□□□□ -0.6
DEPDC4-207ENST00000549249 SLC26A8Q96RN1 970 aa11.29□□□□□ -0.6
DEPDC4-207ENST00000549249 STK26Q9P289 416 aa11.29□□□□□ -0.6
DEPDC4-207ENST00000549249 NPHP4O75161 1426 aaPredicted RBP11.28□□□□□ -0.6
DEPDC4-207ENST00000549249 BCANQ96GW7 911 aa11.28□□□□□ -0.6
DEPDC4-207ENST00000549249 TBX22Q9Y458 520 aa11.28□□□□□ -0.6
DEPDC4-207ENST00000549249 STRCQ7RTU9 1775 aa11.28□□□□□ -0.6
DEPDC4-207ENST00000549249 PLEKHH1Q9ULM0 1364 aa11.28□□□□□ -0.6
DEPDC4-207ENST00000549249 NCKAP5LQ9HCH0 1330 aa11.27□□□□□ -0.61
DEPDC4-207ENST00000549249 POTEB2H3BUK9 544 aa11.26□□□□□ -0.61
DEPDC4-207ENST00000549249 TMF1P82094 1093 aa11.26□□□□□ -0.61
DEPDC4-207ENST00000549249 OTUD5Q96G74 571 aa11.26□□□□□ -0.61
DEPDC4-207ENST00000549249 PRAM1Q96QH2 718 aa11.26□□□□□ -0.61
DEPDC4-207ENST00000549249 ROBO2Q9HCK4 1378 aa11.26□□□□□ -0.61
DEPDC4-207ENST00000549249 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.26□□□□□ -0.61
DEPDC4-207ENST00000549249 FAM135BQ49AJ0 1406 aa11.26□□□□□ -0.61
DEPDC4-207ENST00000549249 NWD1Q149M9 1564 aa11.24□□□□□ -0.61
DEPDC4-207ENST00000549249 SAFB2Q14151 953 aaKnown RBP eCLIP11.24□□□□□ -0.61
DEPDC4-207ENST00000549249 WAPLQ7Z5K2 1190 aa11.24□□□□□ -0.61
DEPDC4-207ENST00000549249 PELP1Q8IZL8 1130 aaKnown RBP11.24□□□□□ -0.61
DEPDC4-207ENST00000549249 MS4A3Q96HJ5 214 aa11.24□□□□□ -0.61
DEPDC4-207ENST00000549249 POLR3GLQ9BT43 218 aa11.24□□□□□ -0.61
DEPDC4-207ENST00000549249 PIK3R4Q99570 1358 aa11.24□□□□□ -0.61
DEPDC4-207ENST00000549249 PTCH1Q13635 1447 aa11.24□□□□□ -0.61
DEPDC4-207ENST00000549249 ADGRB2O60241 1585 aa11.24□□□□□ -0.61
DEPDC4-207ENST00000549249 ZBTB47Q9UFB7 747 aaPredicted RBP11.23□□□□□ -0.61
DEPDC4-207ENST00000549249 STRCP1A6NGW2 1772 aa11.23□□□□□ -0.61
DEPDC4-207ENST00000549249 UBAP1LF5GYI3 381 aa11.22□□□□□ -0.61
DEPDC4-207ENST00000549249 MINK1Q8N4C8 1332 aaPredicted RBP11.22□□□□□ -0.61
DEPDC4-207ENST00000549249 SIRT1Q96EB6 747 aa11.22□□□□□ -0.61
DEPDC4-207ENST00000549249 TSPYL2Q9H2G4 693 aaPredicted RBP11.22□□□□□ -0.61
DEPDC4-207ENST00000549249 AMOTL2Q9Y2J4 779 aa11.22□□□□□ -0.61
DEPDC4-207ENST00000549249 ASTLQ6HA08 431 aaPredicted RBP11.21□□□□□ -0.61
DEPDC4-207ENST00000549249 POGKQ9P215 609 aa11.21□□□□□ -0.61
DEPDC4-207ENST00000549249 NALCNQ8IZF0 1738 aa11.21□□□□□ -0.62
DEPDC4-207ENST00000549249 IQSEC2Q5JU85 1478 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms