RNA–Protein interactions for RNA: ENST00000545215.5

LDHA-223, Transcript of lactate dehydrogenase A, human

TSL 1 (best)

Gene LDHA, Length 1,340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDHA-223	ENST00000545215	MNX1	P50219	401 aa	Predicted RBP	11.29	□□□□□ -0.6
LDHA-223	ENST00000545215	CAMSAP2	Q08AD1	1489 aa		11.29	□□□□□ -0.6
LDHA-223	ENST00000545215	PTCH1	Q13635	1447 aa		11.29	□□□□□ -0.6
LDHA-223	ENST00000545215	BRWD3	Q6RI45	1802 aa		11.29	□□□□□ -0.6
LDHA-223	ENST00000545215	ARHGAP35	Q9NRY4	1499 aa		11.29	□□□□□ -0.6
LDHA-223	ENST00000545215	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.29	□□□□□ -0.6
LDHA-223	ENST00000545215	TMEM2	Q9UHN6	1383 aa		11.28	□□□□□ -0.6
LDHA-223	ENST00000545215	GTPBP6	O43824	516 aa	Predicted RBP	11.28	□□□□□ -0.6
LDHA-223	ENST00000545215	RANGAP1	P46060	587 aa	Predicted RBP	11.28	□□□□□ -0.6
LDHA-223	ENST00000545215	C14orf37	Q86TY3	774 aa		11.28	□□□□□ -0.6
LDHA-223	ENST00000545215	SPON1	Q9HCB6	807 aa		11.28	□□□□□ -0.6
LDHA-223	ENST00000545215	CREBZF	Q9NS37	354 aa		11.28	□□□□□ -0.6
LDHA-223	ENST00000545215	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.28	□□□□□ -0.6
LDHA-223	ENST00000545215	ASXL1	Q8IXJ9	1541 aa		11.27	□□□□□ -0.61
LDHA-223	ENST00000545215	ERVK-7	P63135	1459 aa		11.27	□□□□□ -0.61
LDHA-223	ENST00000545215	AKT1S1	Q96B36	256 aa		11.27	□□□□□ -0.61
LDHA-223	ENST00000545215	KCNQ2	O43526	872 aa		11.26	□□□□□ -0.61
LDHA-223	ENST00000545215	CHRM1	P11229	460 aa	Predicted RBP	11.26	□□□□□ -0.61
LDHA-223	ENST00000545215	HSPA6	P17066	643 aa		11.26	□□□□□ -0.61
LDHA-223	ENST00000545215	NBR1	Q14596	966 aa		11.26	□□□□□ -0.61
LDHA-223	ENST00000545215	FAM212A	Q96EL1	285 aa		11.26	□□□□□ -0.61
LDHA-223	ENST00000545215	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.26	□□□□□ -0.61
LDHA-223	ENST00000545215	UTRN	P46939	3433 aa		11.26	□□□□□ -0.61
LDHA-223	ENST00000545215	KIAA1107	Q9UPP5	1409 aa		11.25	□□□□□ -0.61
LDHA-223	ENST00000545215	SEPT12	Q8IYM1	358 aa		11.25	□□□□□ -0.61
LDHA-223	ENST00000545215	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.25	□□□□□ -0.61
LDHA-223	ENST00000545215	VGF	O15240	615 aa	Predicted RBP	11.24	□□□□□ -0.61
LDHA-223	ENST00000545215	KRT27	Q7Z3Y8	459 aa		11.24	□□□□□ -0.61
LDHA-223	ENST00000545215	TNS4	Q8IZW8	715 aa		11.24	□□□□□ -0.61
LDHA-223	ENST00000545215	RBM42	Q9BTD8	480 aa	Known RBP	11.23	□□□□□ -0.61
LDHA-223	ENST00000545215	CHD2	O14647	1828 aa	Known RBP	11.23	□□□□□ -0.61
LDHA-223	ENST00000545215	GLI3	P10071	1580 aa		11.23	□□□□□ -0.61
LDHA-223	ENST00000545215	CDC42BPA	Q5VT25	1732 aa		11.22	□□□□□ -0.61
LDHA-223	ENST00000545215	STK25	O00506	426 aa		11.22	□□□□□ -0.61
LDHA-223	ENST00000545215	DDX17	Q92841	729 aa	Known RBP	11.22	□□□□□ -0.61
LDHA-223	ENST00000545215	DISP2	A7MBM2	1401 aa		11.22	□□□□□ -0.61
LDHA-223	ENST00000545215	ONECUT3	O60422	494 aa	Predicted RBP	11.21	□□□□□ -0.61
LDHA-223	ENST00000545215	PRR29	P0C7W0	189 aa		11.21	□□□□□ -0.61
LDHA-223	ENST00000545215	EZH2	Q15910	746 aa	Known RBP	11.21	□□□□□ -0.61
LDHA-223	ENST00000545215	SGIP1	Q9BQI5	828 aa		11.21	□□□□□ -0.61
LDHA-223	ENST00000545215	RASEF	Q8IZ41	740 aa		11.19	□□□□□ -0.62
LDHA-223	ENST00000545215	CAMKK2	Q96RR4	588 aa		11.19	□□□□□ -0.62
LDHA-223	ENST00000545215	CLEC11A	Q9Y240	323 aa		11.19	□□□□□ -0.62
LDHA-223	ENST00000545215	PPP1R15A	O75807	674 aa	Predicted RBP	11.18	□□□□□ -0.62
LDHA-223	ENST00000545215	UNC5CL	Q8IV45	518 aa		11.18	□□□□□ -0.62
LDHA-223	ENST00000545215	PLEKHH2	Q8IVE3	1493 aa		11.18	□□□□□ -0.62
LDHA-223	ENST00000545215	FAM83G	A6ND36	823 aa		11.17	□□□□□ -0.62
LDHA-223	ENST00000545215	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.17	□□□□□ -0.62
LDHA-223	ENST00000545215	REM2	Q8IYK8	340 aa	Predicted RBP	11.16	□□□□□ -0.62
LDHA-223	ENST00000545215	DCC	P43146	1447 aa		11.16	□□□□□ -0.62
LDHA-223	ENST00000545215	MST1R	Q04912	1400 aa		11.16	□□□□□ -0.62
LDHA-223	ENST00000545215	RGPD1	P0DJD0	1748 aa		11.15	□□□□□ -0.62
LDHA-223	ENST00000545215	DNAJC5G	Q8N7S2	189 aa		11.14	□□□□□ -0.63
LDHA-223	ENST00000545215	PIK3C2B	O00750	1634 aa		11.14	□□□□□ -0.63
LDHA-223	ENST00000545215	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.13	□□□□□ -0.63
LDHA-223	ENST00000545215	NBPF8	Q3BBV2	869 aa		11.13	□□□□□ -0.63
LDHA-223	ENST00000545215	NBPF14	Q5TI25	921 aa		11.13	□□□□□ -0.63
LDHA-223	ENST00000545215	ZFP91	Q96JP5	570 aa	Predicted RBP	11.13	□□□□□ -0.63
LDHA-223	ENST00000545215	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.13	□□□□□ -0.63
LDHA-223	ENST00000545215	SOS2	Q07890	1332 aa	Predicted RBP	11.13	□□□□□ -0.63
LDHA-223	ENST00000545215	CFAP65	Q6ZU64	1925 aa	Known RBP	11.13	□□□□□ -0.63
LDHA-223	ENST00000545215	TBX22	Q9Y458	520 aa		11.12	□□□□□ -0.63
LDHA-223	ENST00000545215	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.12	□□□□□ -0.63
LDHA-223	ENST00000545215	EFCAB6	Q5THR3	1501 aa		11.12	□□□□□ -0.63
LDHA-223	ENST00000545215	PARD3	Q8TEW0	1356 aa		11.12	□□□□□ -0.63
LDHA-223	ENST00000545215	SYT17	Q9BSW7	474 aa		11.11	□□□□□ -0.63
LDHA-223	ENST00000545215	STK24	Q9Y6E0	443 aa		11.11	□□□□□ -0.63
LDHA-223	ENST00000545215	MYOM2	P54296	1465 aa		11.11	□□□□□ -0.63
LDHA-223	ENST00000545215	SHANK3	Q9BYB0	1731 aa		11.11	□□□□□ -0.63
LDHA-223	ENST00000545215	MARF1	Q9Y4F3	1742 aa	Known RBP	11.11	□□□□□ -0.63
LDHA-223	ENST00000545215	FMN1	Q68DA7	1419 aa		11.11	□□□□□ -0.63
LDHA-223	ENST00000545215	RYDEN	Q9NUL5	291 aa	Known RBP	11.1	□□□□□ -0.63
LDHA-223	ENST00000545215	SLIT2	O94813	1529 aa		11.1	□□□□□ -0.63
LDHA-223	ENST00000545215	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.09	□□□□□ -0.63
LDHA-223	ENST00000545215	TNS1	Q9HBL0	1735 aa	Known RBP	11.09	□□□□□ -0.63
LDHA-223	ENST00000545215	PYGB	P11216	843 aa		11.09	□□□□□ -0.63
LDHA-223	ENST00000545215	VPS72	Q15906	364 aa		11.09	□□□□□ -0.63
LDHA-223	ENST00000545215	LAMC1	P11047	1609 aa		11.08	□□□□□ -0.64
LDHA-223	ENST00000545215	MBD5	Q9P267	1494 aa		11.08	□□□□□ -0.64
LDHA-223	ENST00000545215	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.08	□□□□□ -0.64
LDHA-223	ENST00000545215	PLEKHG1	Q9ULL1	1385 aa		11.07	□□□□□ -0.64
LDHA-223	ENST00000545215	NRK	Q7Z2Y5	1582 aa		11.07	□□□□□ -0.64
LDHA-223	ENST00000545215	LRRIQ1	Q96JM4	1722 aa		11.07	□□□□□ -0.64
LDHA-223	ENST00000545215	APLP1	P51693	650 aa		11.07	□□□□□ -0.64
LDHA-223	ENST00000545215	IDI1	Q13907	227 aa		11.07	□□□□□ -0.64
LDHA-223	ENST00000545215	WWC3	Q9ULE0	1092 aa		11.06	□□□□□ -0.64
LDHA-223	ENST00000545215	ARHGAP31	Q2M1Z3	1444 aa		11.05	□□□□□ -0.64
LDHA-223	ENST00000545215	PTGER2	P43116	358 aa		11.05	□□□□□ -0.64
LDHA-223	ENST00000545215	FAM182B	Q5T319	152 aa		11.05	□□□□□ -0.64
LDHA-223	ENST00000545215	RREB1	Q92766	1687 aa		11.05	□□□□□ -0.64
LDHA-223	ENST00000545215	NUP188	Q5SRE5	1749 aa		11.04	□□□□□ -0.64
LDHA-223	ENST00000545215	PIK3R4	Q99570	1358 aa		11.04	□□□□□ -0.64
LDHA-223	ENST00000545215	PITPNM1	O00562	1244 aa		11.04	□□□□□ -0.64
LDHA-223	ENST00000545215	APBA3	O96018	575 aa		11.04	□□□□□ -0.64
LDHA-223	ENST00000545215	MYOM1	P52179	1685 aa		11.03	□□□□□ -0.64
LDHA-223	ENST00000545215	ADGRB2	O60241	1585 aa		11.03	□□□□□ -0.64
LDHA-223	ENST00000545215	ADGRB3	O60242	1522 aa		11.03	□□□□□ -0.64
LDHA-223	ENST00000545215	ZNF644	Q9H582	1327 aa	Predicted RBP	11.03	□□□□□ -0.64
LDHA-223	ENST00000545215	AATK	Q6ZMQ8	1374 aa		11.02	□□□□□ -0.65
LDHA-223	ENST00000545215	GPR162	Q16538	588 aa		11.02	□□□□□ -0.65

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