RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, human

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HOMER3-205	ENST00000542541	SBNO2	Q9Y2G9	1366 aa		32.38	■■■□□ 2.77
HOMER3-205	ENST00000542541	RBM33	Q96EV2	1170 aa	Known RBP	32.37	■■■□□ 2.77
HOMER3-205	ENST00000542541	LRRC7	Q96NW7	1537 aa		32.37	■■■□□ 2.77
HOMER3-205	ENST00000542541	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.37	■■■□□ 2.77
HOMER3-205	ENST00000542541	TESK2	Q96S53	571 aa		32.37	■■■□□ 2.77
HOMER3-205	ENST00000542541	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.35	■■■□□ 2.77
HOMER3-205	ENST00000542541	C19orf44	Q9H6X5	657 aa		32.33	■■■□□ 2.77
HOMER3-205	ENST00000542541	ADGRL3	Q9HAR2	1447 aa		32.31	■■■□□ 2.76
HOMER3-205	ENST00000542541	QRICH2	Q9H0J4	1663 aa		32.31	■■■□□ 2.76
HOMER3-205	ENST00000542541	TMF1	P82094	1093 aa		32.31	■■■□□ 2.76
HOMER3-205	ENST00000542541	EVC2	Q86UK5	1308 aa		32.31	■■■□□ 2.76
HOMER3-205	ENST00000542541	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.27	■■■□□ 2.76
HOMER3-205	ENST00000542541	MSH6	P52701	1360 aa		32.27	■■■□□ 2.76
HOMER3-205	ENST00000542541	WASL	O00401	505 aa	Predicted RBP	32.26	■■■□□ 2.76
HOMER3-205	ENST00000542541	CDCA8	Q53HL2	280 aa		32.26	■■■□□ 2.76
HOMER3-205	ENST00000542541	CERK	Q8TCT0	537 aa		32.24	■■■□□ 2.75
HOMER3-205	ENST00000542541	CDK19	Q9BWU1	502 aa		32.24	■■■□□ 2.75
HOMER3-205	ENST00000542541	IQSEC2	Q5JU85	1478 aa		32.24	■■■□□ 2.75
HOMER3-205	ENST00000542541	ATF3	P18847	181 aa		32.23	■■■□□ 2.75
HOMER3-205	ENST00000542541	ADGRB2	O60241	1585 aa		32.23	■■■□□ 2.75
HOMER3-205	ENST00000542541	NALCN	Q8IZF0	1738 aa		32.21	■■■□□ 2.75
HOMER3-205	ENST00000542541	DCC	P43146	1447 aa		32.21	■■■□□ 2.75
HOMER3-205	ENST00000542541	SRPK2	P78362	688 aa	Known RBP	32.21	■■■□□ 2.75
HOMER3-205	ENST00000542541	CADPS2	Q86UW7	1296 aa		32.21	■■■□□ 2.75
HOMER3-205	ENST00000542541	PUS7	Q96PZ0	661 aa	Known RBP	32.2	■■■□□ 2.75
HOMER3-205	ENST00000542541	CDC42BPG	Q6DT37	1551 aa		32.18	■■■□□ 2.74
HOMER3-205	ENST00000542541	DISP3	Q9P2K9	1392 aa		32.18	■■■□□ 2.74
HOMER3-205	ENST00000542541	TULP4	Q9NRJ4	1543 aa		32.17	■■■□□ 2.74
HOMER3-205	ENST00000542541	CABP2	Q9NPB3	220 aa		32.15	■■■□□ 2.74
HOMER3-205	ENST00000542541	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.13	■■■□□ 2.73
HOMER3-205	ENST00000542541	C11orf95	C9JLR9	678 aa	Predicted RBP	32.12	■■■□□ 2.73
HOMER3-205	ENST00000542541	ATAD2	Q6PL18	1390 aa		32.11	■■■□□ 2.73
HOMER3-205	ENST00000542541	NUDT16	Q96DE0	195 aa	Known RBP	32.11	■■■□□ 2.73
HOMER3-205	ENST00000542541	ANKAR	Q7Z5J8	1434 aa		32.1	■■■□□ 2.73
HOMER3-205	ENST00000542541	NUTM2F	A1L443	756 aa		32.09	■■■□□ 2.73
HOMER3-205	ENST00000542541	POLR3GL	Q9BT43	218 aa		32.09	■■■□□ 2.73
HOMER3-205	ENST00000542541	KIF7	Q2M1P5	1343 aa		32.09	■■■□□ 2.73
HOMER3-205	ENST00000542541	CCDC61	Q9Y6R9	512 aa		32.08	■■■□□ 2.73
HOMER3-205	ENST00000542541	FMN2	Q9NZ56	1722 aa		32.06	■■■□□ 2.72
HOMER3-205	ENST00000542541	CCDC7	Q96M83	1385 aa		32.06	■■■□□ 2.72
HOMER3-205	ENST00000542541	SLAIN2	Q9P270	581 aa		32.05	■■■□□ 2.72
HOMER3-205	ENST00000542541	WASHC2A	Q641Q2	1341 aa		32.05	■■■□□ 2.72
HOMER3-205	ENST00000542541	PRR36	Q9H6K5	1346 aa		32.04	■■■□□ 2.72
HOMER3-205	ENST00000542541	TOM1	O60784	492 aa		32.04	■■■□□ 2.72
HOMER3-205	ENST00000542541	MST1R	Q04912	1400 aa		32.03	■■■□□ 2.72
HOMER3-205	ENST00000542541	ATP7B	P35670	1465 aa		32.03	■■■□□ 2.72
HOMER3-205	ENST00000542541	C1orf167	Q5SNV9	1468 aa		32.01	■■■□□ 2.72
HOMER3-205	ENST00000542541	NINL	Q9Y2I6	1382 aa		32.01	■■■□□ 2.71
HOMER3-205	ENST00000542541	ESCO1	Q5FWF5	840 aa		32	■■■□□ 2.71
HOMER3-205	ENST00000542541	TMC1	Q8TDI8	760 aa		32	■■■□□ 2.71
HOMER3-205	ENST00000542541	CABP1	Q9NZU7	370 aa		31.99	■■■□□ 2.71
HOMER3-205	ENST00000542541	PPIP5K1	Q6PFW1	1433 aa		31.97	■■■□□ 2.71
HOMER3-205	ENST00000542541	PLEKHG3	A1L390	1219 aa		31.97	■■■□□ 2.71
HOMER3-205	ENST00000542541	PHF8	Q9UPP1	1060 aa		31.96	■■■□□ 2.71
HOMER3-205	ENST00000542541	USP32	Q8NFA0	1604 aa		31.96	■■■□□ 2.71
HOMER3-205	ENST00000542541	UBAP1L	F5GYI3	381 aa		31.95	■■■□□ 2.71
HOMER3-205	ENST00000542541	ORAI2	Q96SN7	254 aa		31.95	■■■□□ 2.71
HOMER3-205	ENST00000542541	SLC12A5	Q9H2X9	1139 aa		31.95	■■■□□ 2.71
HOMER3-205	ENST00000542541	TERF2IP	Q9NYB0	399 aa		31.92	■■■□□ 2.7
HOMER3-205	ENST00000542541	NGDN	Q8NEJ9	315 aa	Known RBP	31.91	■■■□□ 2.7
HOMER3-205	ENST00000542541	PMFBP1	Q8TBY8	1022 aa		31.91	■■■□□ 2.7
HOMER3-205	ENST00000542541	ITSN1	Q15811	1721 aa		31.9	■■■□□ 2.7
HOMER3-205	ENST00000542541	BRINP3	Q76B58	766 aa		31.89	■■■□□ 2.7
HOMER3-205	ENST00000542541	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	31.89	■■■□□ 2.7
HOMER3-205	ENST00000542541	ZNF692	Q9BU19	519 aa	Predicted RBP	31.88	■■■□□ 2.69
HOMER3-205	ENST00000542541	ACE	P12821	1306 aa		31.88	■■■□□ 2.69
HOMER3-205	ENST00000542541	TOPAZ1	Q8N9V7	1692 aa		31.87	■■■□□ 2.69
HOMER3-205	ENST00000542541	RGPD8	O14715	1765 aa	Predicted RBP	31.87	■■■□□ 2.69
HOMER3-205	ENST00000542541	POLR3A	O14802	1390 aa	Predicted RBP	31.85	■■■□□ 2.69
HOMER3-205	ENST00000542541	ROBO1	Q9Y6N7	1651 aa		31.85	■■■□□ 2.69
HOMER3-205	ENST00000542541	ANKRD36B	Q8N2N9	1353 aa		31.85	■■■□□ 2.69
HOMER3-205	ENST00000542541	FOXO3	O43524	673 aa		31.83	■■■□□ 2.69
HOMER3-205	ENST00000542541	PIP4K2B	P78356	416 aa		31.83	■■■□□ 2.69
HOMER3-205	ENST00000542541	PANK3	Q9H999	370 aa		31.83	■■■□□ 2.69
HOMER3-205	ENST00000542541	KIF1A	Q12756	1690 aa		31.82	■■■□□ 2.68
HOMER3-205	ENST00000542541	PSME1	Q06323	249 aa		31.82	■■■□□ 2.68
HOMER3-205	ENST00000542541	DDX10	Q13206	875 aa	Known RBP	31.82	■■■□□ 2.68
HOMER3-205	ENST00000542541	FBXO41	Q8TF61	875 aa		31.82	■■■□□ 2.68
HOMER3-205	ENST00000542541	CPSF1	Q10570	1443 aa	Known RBP	31.82	■■■□□ 2.68
HOMER3-205	ENST00000542541	MYOM1	P52179	1685 aa		31.81	■■■□□ 2.68
HOMER3-205	ENST00000542541	NPHP3	Q7Z494	1330 aa		31.81	■■■□□ 2.68
HOMER3-205	ENST00000542541	SCAF1	Q9H7N4	1312 aa	Known RBP	31.81	■■■□□ 2.68
HOMER3-205	ENST00000542541		A0A1W2PP64	1363 aa		31.79	■■■□□ 2.68
HOMER3-205	ENST00000542541	KTN1	Q86UP2	1357 aa	Known RBP	31.79	■■■□□ 2.68
HOMER3-205	ENST00000542541	CD163L1	Q9NR16	1453 aa		31.78	■■■□□ 2.68
HOMER3-205	ENST00000542541	KRT28	Q7Z3Y7	464 aa		31.75	■■■□□ 2.67
HOMER3-205	ENST00000542541	BRD4	O60885	1362 aa	Predicted RBP	31.74	■■■□□ 2.67
HOMER3-205	ENST00000542541	USP6	P35125	1406 aa		31.73	■■■□□ 2.67
HOMER3-205	ENST00000542541	CARD14	Q9BXL6	1004 aa		31.72	■■■□□ 2.67
HOMER3-205	ENST00000542541	KNSTRN	Q9Y448	316 aa		31.71	■■■□□ 2.67
HOMER3-205	ENST00000542541	NHSL1	Q5SYE7	1610 aa		31.71	■■■□□ 2.67
HOMER3-205	ENST00000542541	DDX17	Q92841	729 aa	Known RBP	31.71	■■■□□ 2.67
HOMER3-205	ENST00000542541	EDC4	Q6P2E9	1401 aa	Known RBP	31.7	■■■□□ 2.67
HOMER3-205	ENST00000542541	XPC	Q01831	940 aa	Predicted RBP	31.69	■■■□□ 2.66
HOMER3-205	ENST00000542541	SOS2	Q07890	1332 aa	Predicted RBP	31.68	■■■□□ 2.66
HOMER3-205	ENST00000542541	AKAP12	Q02952	1782 aa		31.68	■■■□□ 2.66
HOMER3-205	ENST00000542541	PER1	O15534	1290 aa	Predicted RBP	31.67	■■■□□ 2.66
HOMER3-205	ENST00000542541	NSD3	Q9BZ95	1437 aa		31.67	■■■□□ 2.66
HOMER3-205	ENST00000542541	PAK3	O75914	559 aa	Predicted RBP	31.67	■■■□□ 2.66
HOMER3-205	ENST00000542541	TTC21B	Q7Z4L5	1316 aa		31.67	■■■□□ 2.66

Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms