RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 COL22A1Q8NFW1 1626 aaPredicted RBP23.11■■□□□ 1.29
RTN3-211ENST00000542238 NPHP3Q7Z494 1330 aa23.1■■□□□ 1.29
RTN3-211ENST00000542238 CCDC144AA2RUR9 1427 aa23.1■■□□□ 1.29
RTN3-211ENST00000542238 FOXD1Q16676 465 aa23.1■■□□□ 1.29
RTN3-211ENST00000542238 TRPC5Q9UL62 973 aaPredicted RBP23.1■■□□□ 1.29
RTN3-211ENST00000542238 RGL3Q3MIN7 710 aa23.08■■□□□ 1.29
RTN3-211ENST00000542238 ADGRF5Q8IZF2 1346 aa23.08■■□□□ 1.28
RTN3-211ENST00000542238 FNBP4Q8N3X1 1017 aaPredicted RBP23.07■■□□□ 1.28
RTN3-211ENST00000542238 STK26Q9P289 416 aa23.07■■□□□ 1.28
RTN3-211ENST00000542238 LRPPRCP42704 1394 aaKnown RBP23.06■■□□□ 1.28
RTN3-211ENST00000542238 ATAD2Q6PL18 1390 aa23.06■■□□□ 1.28
RTN3-211ENST00000542238 ANKRD30BQ9BXX2 1392 aa23.06■■□□□ 1.28
RTN3-211ENST00000542238 FOXO3O43524 673 aa23.04■■□□□ 1.28
RTN3-211ENST00000542238 IFT172Q9UG01 1749 aa23.04■■□□□ 1.28
RTN3-211ENST00000542238 MARF1Q9Y4F3 1742 aaKnown RBP23.04■■□□□ 1.28
RTN3-211ENST00000542238 PXDNQ92626 1479 aa23.04■■□□□ 1.28
RTN3-211ENST00000542238 TECPR2O15040 1411 aa23.03■■□□□ 1.28
RTN3-211ENST00000542238 WAPLQ7Z5K2 1190 aa23.03■■□□□ 1.28
RTN3-211ENST00000542238 MYOM2P54296 1465 aa23.03■■□□□ 1.28
RTN3-211ENST00000542238 ATRNO75882 1429 aa23.02■■□□□ 1.28
RTN3-211ENST00000542238 SPATA31E1Q6ZUB1 1445 aa23.02■■□□□ 1.28
RTN3-211ENST00000542238 XPCQ01831 940 aaPredicted RBP23.02■■□□□ 1.28
RTN3-211ENST00000542238 MPHOSPH9Q99550 1183 aa23.02■■□□□ 1.28
RTN3-211ENST00000542238 KNDC1Q76NI1 1749 aa23.02■■□□□ 1.28
RTN3-211ENST00000542238 NUTM2FA1L443 756 aa23.01■■□□□ 1.27
RTN3-211ENST00000542238 ABCC11Q96J66 1382 aa23.01■■□□□ 1.27
RTN3-211ENST00000542238 TMEM132EQ6IEE7 984 aa23■■□□□ 1.27
RTN3-211ENST00000542238 FMN2Q9NZ56 1722 aa22.97■■□□□ 1.27
RTN3-211ENST00000542238 PIK3C2GO75747 1445 aa22.97■■□□□ 1.27
RTN3-211ENST00000542238 KIF1AQ12756 1690 aa22.97■■□□□ 1.27
RTN3-211ENST00000542238 BCL9LQ86UU0 1499 aa22.96■■□□□ 1.27
RTN3-211ENST00000542238 YTHDC2Q9H6S0 1430 aaKnown RBP22.95■■□□□ 1.26
RTN3-211ENST00000542238 PLEKHH1Q9ULM0 1364 aa22.95■■□□□ 1.26
RTN3-211ENST00000542238 ACIN1Q9UKV3 1341 aaKnown RBP22.94■■□□□ 1.26
RTN3-211ENST00000542238 GJD4Q96KN9 370 aaPredicted RBP22.93■■□□□ 1.26
RTN3-211ENST00000542238 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.92■■□□□ 1.26
RTN3-211ENST00000542238 SIRT1Q96EB6 747 aa22.92■■□□□ 1.26
RTN3-211ENST00000542238 SPATA31A3Q5VYP0 1347 aa22.91■■□□□ 1.26
RTN3-211ENST00000542238 CCDC125Q86Z20 511 aa22.91■■□□□ 1.26
RTN3-211ENST00000542238 KRT28Q7Z3Y7 464 aa22.9■■□□□ 1.26
RTN3-211ENST00000542238 RGPD8O14715 1765 aaPredicted RBP22.9■■□□□ 1.26
RTN3-211ENST00000542238 UNC5CLQ8IV45 518 aa22.89■■□□□ 1.25
RTN3-211ENST00000542238 C14orf93Q9H972 538 aaKnown RBP22.89■■□□□ 1.25
RTN3-211ENST00000542238 DHX57Q6P158 1386 aaKnown RBP22.89■■□□□ 1.25
RTN3-211ENST00000542238 HAP1P54257 671 aaPredicted RBP22.88■■□□□ 1.25
RTN3-211ENST00000542238 PSME1Q06323 249 aa22.88■■□□□ 1.25
RTN3-211ENST00000542238 ZRANB1Q9UGI0 708 aa22.88■■□□□ 1.25
RTN3-211ENST00000542238 PHF8Q9UPP1 1060 aa22.87■■□□□ 1.25
RTN3-211ENST00000542238 USP32Q8NFA0 1604 aa22.86■■□□□ 1.25
RTN3-211ENST00000542238 SLIT2O94813 1529 aa22.86■■□□□ 1.25
RTN3-211ENST00000542238 CFAP70Q5T0N1 1121 aa22.85■■□□□ 1.25
RTN3-211ENST00000542238 RALGAPBQ86X10 1494 aa22.84■■□□□ 1.25
RTN3-211ENST00000542238 NRXN1Q9ULB1 1477 aa22.84■■□□□ 1.25
RTN3-211ENST00000542238 EP400Q96L91 3159 aa22.84■■□□□ 1.25
RTN3-211ENST00000542238 TNS3Q68CZ2 1445 aa22.83■■□□□ 1.25
RTN3-211ENST00000542238 GLI3P10071 1580 aa22.82■■□□□ 1.24
RTN3-211ENST00000542238 SAFB2Q14151 953 aaKnown RBP eCLIP22.82■■□□□ 1.241e-7■■■■□ 23.5
RTN3-211ENST00000542238 PRAM1Q96QH2 718 aa22.82■■□□□ 1.24
RTN3-211ENST00000542238 LMOD2Q6P5Q4 547 aa22.81■■□□□ 1.24
RTN3-211ENST00000542238 POGKQ9P215 609 aa22.81■■□□□ 1.24
RTN3-211ENST00000542238 SBNO1A3KN83 1393 aa22.8■■□□□ 1.24
RTN3-211ENST00000542238 ARHGEF10O15013 1369 aa22.79■■□□□ 1.24
RTN3-211ENST00000542238 PLEKHG5O94827 1062 aa22.79■■□□□ 1.24
RTN3-211ENST00000542238 CABLES1Q8TDN4 633 aa22.79■■□□□ 1.24
RTN3-211ENST00000542238 BRWD3Q6RI45 1802 aa22.79■■□□□ 1.24
RTN3-211ENST00000542238 NWD2Q9ULI1 1742 aa22.79■■□□□ 1.24
RTN3-211ENST00000542238 PLCH1Q4KWH8 1693 aa22.77■■□□□ 1.24
RTN3-211ENST00000542238 DLC1Q96QB1 1528 aa22.77■■□□□ 1.24
RTN3-211ENST00000542238 VPS72Q15906 364 aa22.77■■□□□ 1.24
RTN3-211ENST00000542238 CCDC9Q9Y3X0 531 aaKnown RBP22.77■■□□□ 1.24
RTN3-211ENST00000542238 BLMP54132 1417 aaPredicted RBP22.76■■□□□ 1.23
RTN3-211ENST00000542238 ABCA3Q99758 1704 aa22.76■■□□□ 1.23
RTN3-211ENST00000542238 ANKARQ7Z5J8 1434 aa22.75■■□□□ 1.23
RTN3-211ENST00000542238 SEPT12Q8IYM1 358 aa22.75■■□□□ 1.23
RTN3-211ENST00000542238 SRCAPQ6ZRS2 3230 aa22.74■■□□□ 1.23
RTN3-211ENST00000542238 SF3B2Q13435 895 aaKnown RBP22.74■■□□□ 1.23
RTN3-211ENST00000542238 PMFBP1Q8TBY8 1022 aa22.74■■□□□ 1.23
RTN3-211ENST00000542238 ADGRB2O60241 1585 aa22.73■■□□□ 1.23
RTN3-211ENST00000542238 TRAK1Q9UPV9 953 aa22.71■■□□□ 1.23
RTN3-211ENST00000542238 EIF3AQ14152 1382 aaKnown RBP22.71■■□□□ 1.23
RTN3-211ENST00000542238 ONECUT3O60422 494 aaPredicted RBP22.7■■□□□ 1.22
RTN3-211ENST00000542238 GPRASP1Q5JY77 1395 aa22.7■■□□□ 1.22
RTN3-211ENST00000542238 RAB3GAP2Q9H2M9 1393 aa22.7■■□□□ 1.22
RTN3-211ENST00000542238 ADGRB1O14514 1584 aa22.69■■□□□ 1.22
RTN3-211ENST00000542238 FAM83GA6ND36 823 aa22.69■■□□□ 1.22
RTN3-211ENST00000542238 KRT27Q7Z3Y8 459 aa22.69■■□□□ 1.22
RTN3-211ENST00000542238 HIRIP3Q9BW71 556 aaPredicted RBP22.69■■□□□ 1.22
RTN3-211ENST00000542238 TRPM3Q9HCF6 1732 aaPredicted RBP22.68■■□□□ 1.22
RTN3-211ENST00000542238 MINK1Q8N4C8 1332 aaPredicted RBP22.67■■□□□ 1.22
RTN3-211ENST00000542238 A0A0G2JS52 829 aa22.67■■□□□ 1.22
RTN3-211ENST00000542238 MYT1Q01538 1121 aa22.67■■□□□ 1.22
RTN3-211ENST00000542238 KDM2AQ9Y2K7 1162 aa22.67■■□□□ 1.22
RTN3-211ENST00000542238 DEFB132Q7Z7B7 95 aa22.66■■□□□ 1.22
RTN3-211ENST00000542238 DCAF11Q8TEB1 546 aa22.66■■□□□ 1.22
RTN3-211ENST00000542238 TULP4Q9NRJ4 1543 aa22.65■■□□□ 1.22
RTN3-211ENST00000542238 ALS2Q96Q42 1657 aa22.65■■□□□ 1.22
RTN3-211ENST00000542238 COL14A1Q05707 1796 aaKnown RBP22.64■■□□□ 1.22
RTN3-211ENST00000542238 WASLO00401 505 aaPredicted RBP22.64■■□□□ 1.21
RTN3-211ENST00000542238 STAC3Q96MF2 364 aa22.64■■□□□ 1.21
RTN3-211ENST00000542238 BTG4Q9NY30 223 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms