RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 NEUROD1Q13562 356 aa9.64□□□□□ -0.87
CLTCL1-206ENST00000540896 HS3ST6Q96QI5 342 aa9.64□□□□□ -0.87
CLTCL1-206ENST00000540896 RNF17Q9BXT8 1623 aaKnown RBP9.64□□□□□ -0.87
CLTCL1-206ENST00000540896 FBXO22Q8NEZ5 403 aa9.63□□□□□ -0.87
CLTCL1-206ENST00000540896 FER1L4A9Z1Z3 1794 aa9.63□□□□□ -0.87
CLTCL1-206ENST00000540896 RIMS1Q86UR5 1692 aaKnown RBP9.62□□□□□ -0.87
CLTCL1-206ENST00000540896 SIN3AQ96ST3 1273 aa9.62□□□□□ -0.87
CLTCL1-206ENST00000540896 CNTLNQ9NXG0 1405 aa9.62□□□□□ -0.87
CLTCL1-206ENST00000540896 CLTCQ00610 1675 aaKnown RBP9.61□□□□□ -0.87
CLTCL1-206ENST00000540896 PZPP20742 1482 aa9.61□□□□□ -0.87
CLTCL1-206ENST00000540896 DEPDC5O75140 1603 aa9.61□□□□□ -0.87
CLTCL1-206ENST00000540896 MROH1Q8NDA8 1641 aa9.61□□□□□ -0.87
CLTCL1-206ENST00000540896 CEBPAP49715 358 aaPredicted RBP9.61□□□□□ -0.87
CLTCL1-206ENST00000540896 SPNS2Q8IVW8 549 aa9.61□□□□□ -0.87
CLTCL1-206ENST00000540896 PTPRMP28827 1452 aa9.6□□□□□ -0.87
CLTCL1-206ENST00000540896 ERBB3P21860 1342 aa9.6□□□□□ -0.87
CLTCL1-206ENST00000540896 MFRPQ9BY79 579 aa9.6□□□□□ -0.87
CLTCL1-206ENST00000540896 ABCC3O15438 1527 aa9.6□□□□□ -0.87
CLTCL1-206ENST00000540896 PRDM15P57071 1507 aaPredicted RBP9.6□□□□□ -0.87
CLTCL1-206ENST00000540896 KDM5DQ9BY66 1539 aa9.6□□□□□ -0.87
CLTCL1-206ENST00000540896 ZMYM3Q14202 1370 aa9.6□□□□□ -0.87
CLTCL1-206ENST00000540896 UNC13BO14795 1591 aa9.59□□□□□ -0.87
CLTCL1-206ENST00000540896 RGL2O15211 777 aa9.59□□□□□ -0.87
CLTCL1-206ENST00000540896 TMEM92Q6UXU6 159 aa9.59□□□□□ -0.87
CLTCL1-206ENST00000540896 FAM135AQ9P2D6 1515 aa9.59□□□□□ -0.87
CLTCL1-206ENST00000540896 CEP152O94986 1710 aa9.58□□□□□ -0.88
CLTCL1-206ENST00000540896 VWDEQ8N2E2 1590 aa9.58□□□□□ -0.88
CLTCL1-206ENST00000540896 MROH2AA6NES4 1674 aa9.58□□□□□ -0.88
CLTCL1-206ENST00000540896 ZC3H13Q5T200 1668 aaKnown RBP9.58□□□□□ -0.88
CLTCL1-206ENST00000540896 C3P01024 1663 aa9.57□□□□□ -0.88
CLTCL1-206ENST00000540896 CAMSAP1Q5T5Y3 1602 aa9.56□□□□□ -0.88
CLTCL1-206ENST00000540896 TONSLQ96HA7 1378 aa9.56□□□□□ -0.88
CLTCL1-206ENST00000540896 ANKRD30BQ9BXX2 1392 aa9.56□□□□□ -0.88
CLTCL1-206ENST00000540896 MMRN1Q13201 1228 aa9.56□□□□□ -0.88
CLTCL1-206ENST00000540896 FBXO31Q5XUX0 539 aaPredicted RBP9.56□□□□□ -0.88
CLTCL1-206ENST00000540896 IQGAP3Q86VI3 1631 aa9.56□□□□□ -0.88
CLTCL1-206ENST00000540896 LMTK2Q8IWU2 1503 aa9.56□□□□□ -0.88
CLTCL1-206ENST00000540896 TIMELESSQ9UNS1 1208 aa9.55□□□□□ -0.88
CLTCL1-206ENST00000540896 POTEB3A0JP26 581 aa9.54□□□□□ -0.88
CLTCL1-206ENST00000540896 POTEBQ6S5H4 581 aa9.54□□□□□ -0.88
CLTCL1-206ENST00000540896 ARHGAP31Q2M1Z3 1444 aa9.54□□□□□ -0.88
CLTCL1-206ENST00000540896 TET3O43151 1660 aa9.54□□□□□ -0.88
CLTCL1-206ENST00000540896 EFCAB6Q5THR3 1501 aa9.53□□□□□ -0.88
CLTCL1-206ENST00000540896 CFAP65Q6ZU64 1925 aaKnown RBP9.53□□□□□ -0.88
CLTCL1-206ENST00000540896 GPR153Q6NV75 609 aa9.53□□□□□ -0.88
CLTCL1-206ENST00000540896 NPATQ14207 1427 aa9.53□□□□□ -0.88
CLTCL1-206ENST00000540896 CCDC144AA2RUR9 1427 aa9.52□□□□□ -0.89
CLTCL1-206ENST00000540896 KRTAP3-3Q9BYR6 98 aa9.52□□□□□ -0.89
CLTCL1-206ENST00000540896 KRTAP3-2Q9BYR7 98 aa9.52□□□□□ -0.89
CLTCL1-206ENST00000540896 E9PCH4 1651 aa9.51□□□□□ -0.89
CLTCL1-206ENST00000540896 ERVK-7P63135 1459 aa9.51□□□□□ -0.89
CLTCL1-206ENST00000540896 RPRD2Q5VT52 1461 aaKnown RBP9.51□□□□□ -0.89
CLTCL1-206ENST00000540896 TNRQ92752 1358 aa9.5□□□□□ -0.89
CLTCL1-206ENST00000540896 RGL3Q3MIN7 710 aa9.5□□□□□ -0.89
CLTCL1-206ENST00000540896 VARS2Q5ST30 1063 aaKnown RBP9.5□□□□□ -0.89
CLTCL1-206ENST00000540896 TMC2Q8TDI7 906 aa9.5□□□□□ -0.89
CLTCL1-206ENST00000540896 L3MBTL2Q969R5 705 aa9.5□□□□□ -0.89
CLTCL1-206ENST00000540896 PREX1Q8TCU6 1659 aa9.5□□□□□ -0.89
CLTCL1-206ENST00000540896 SETD1BQ9UPS6 1966 aaKnown RBP9.5□□□□□ -0.89
CLTCL1-206ENST00000540896 SPATA31D1Q6ZQQ2 1576 aa9.5□□□□□ -0.89
CLTCL1-206ENST00000540896 CHGAP10645 457 aaKnown RBP9.49□□□□□ -0.89
CLTCL1-206ENST00000540896 NOS1P29475 1434 aa9.48□□□□□ -0.89
CLTCL1-206ENST00000540896 KIF3CO14782 793 aa9.48□□□□□ -0.89
CLTCL1-206ENST00000540896 PPP1R15AO75807 674 aaPredicted RBP9.48□□□□□ -0.89
CLTCL1-206ENST00000540896 ZNF687Q8N1G0 1237 aa9.48□□□□□ -0.89
CLTCL1-206ENST00000540896 PTPRTO14522 1441 aa9.48□□□□□ -0.89
CLTCL1-206ENST00000540896 UHRF1BP1Q6BDS2 1440 aa9.48□□□□□ -0.89
CLTCL1-206ENST00000540896 PLA2R1Q13018 1463 aa9.47□□□□□ -0.89
CLTCL1-206ENST00000540896 C2orf72A6NCS6 295 aa9.47□□□□□ -0.89
CLTCL1-206ENST00000540896 IDI1Q13907 227 aa9.47□□□□□ -0.89
CLTCL1-206ENST00000540896 ZNF326Q5BKZ1 582 aaKnown RBP9.47□□□□□ -0.89
CLTCL1-206ENST00000540896 ARSIQ5FYB1 569 aa9.47□□□□□ -0.89
CLTCL1-206ENST00000540896 HS6ST3Q8IZP7 471 aa9.47□□□□□ -0.89
CLTCL1-206ENST00000540896 SLC52A1Q9NWF4 448 aa9.47□□□□□ -0.89
CLTCL1-206ENST00000540896 KDM2AQ9Y2K7 1162 aa9.47□□□□□ -0.89
CLTCL1-206ENST00000540896 SYNMO15061 1565 aa9.46□□□□□ -0.89
CLTCL1-206ENST00000540896 MYO3AQ8NEV4 1616 aa9.46□□□□□ -0.89
CLTCL1-206ENST00000540896 DCAF11Q8TEB1 546 aa9.46□□□□□ -0.9
CLTCL1-206ENST00000540896 RYDENQ9NUL5 291 aaKnown RBP9.46□□□□□ -0.9
CLTCL1-206ENST00000540896 NLRP1Q9C000 1473 aa9.46□□□□□ -0.9
CLTCL1-206ENST00000540896 SPHKAPQ2M3C7 1700 aa9.45□□□□□ -0.9
CLTCL1-206ENST00000540896 SLC34A2O95436 690 aa9.45□□□□□ -0.9
CLTCL1-206ENST00000540896 HSPA2P54652 639 aa9.45□□□□□ -0.9
CLTCL1-206ENST00000540896 A2ML1A8K2U0 1454 aa9.45□□□□□ -0.9
CLTCL1-206ENST00000540896 LMTK3Q96Q04 1460 aa9.45□□□□□ -0.9
CLTCL1-206ENST00000540896 CEP170BQ9Y4F5 1589 aaPredicted RBP9.45□□□□□ -0.9
CLTCL1-206ENST00000540896 THEMISQ8N1K5 641 aaPredicted RBP9.44□□□□□ -0.9
CLTCL1-206ENST00000540896 TRPM2O94759 1503 aa9.44□□□□□ -0.9
CLTCL1-206ENST00000540896 UGGT1Q9NYU2 1555 aa9.44□□□□□ -0.9
CLTCL1-206ENST00000540896 PIK3C2BO00750 1634 aa9.43□□□□□ -0.9
CLTCL1-206ENST00000540896 ZNF316A6NFI3 1004 aaPredicted RBP9.43□□□□□ -0.9
CLTCL1-206ENST00000540896 ZNF142P52746 1687 aaPredicted RBP9.42□□□□□ -0.9
CLTCL1-206ENST00000540896 UBR1Q8IWV7 1749 aa9.42□□□□□ -0.9
CLTCL1-206ENST00000540896 CLTCL1P53675 1640 aa9.42□□□□□ -0.9
CLTCL1-206ENST00000540896 PTGER2P43116 358 aa9.41□□□□□ -0.9
CLTCL1-206ENST00000540896 AMER1Q5JTC6 1135 aaPredicted RBP9.41□□□□□ -0.9
CLTCL1-206ENST00000540896 NBPF8Q3BBV2 869 aa9.4□□□□□ -0.9
CLTCL1-206ENST00000540896 STAC3Q96MF2 364 aa9.4□□□□□ -0.9
CLTCL1-206ENST00000540896 TMEM131LA2VDJ0 1609 aa9.4□□□□□ -0.9
CLTCL1-206ENST00000540896 ADGRB3O60242 1522 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms