RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 POTEAQ6S8J7 498 aa30.8■■■□□ 2.52
CHFR-217ENST00000540537 WAPLQ7Z5K2 1190 aa30.79■■■□□ 2.52
CHFR-217ENST00000540537 DDX17Q92841 729 aaKnown RBP30.79■■■□□ 2.52
CHFR-217ENST00000540537 ORAI2Q96SN7 254 aa30.78■■■□□ 2.52
CHFR-217ENST00000540537 CFAP70Q5T0N1 1121 aa30.77■■■□□ 2.52
CHFR-217ENST00000540537 MEX3CQ5U5Q3 659 aaKnown RBP30.77■■■□□ 2.52
CHFR-217ENST00000540537 SIRT1Q96EB6 747 aa30.77■■■□□ 2.52
CHFR-217ENST00000540537 DHX57Q6P158 1386 aaKnown RBP30.76■■■□□ 2.51
CHFR-217ENST00000540537 PLEKHH1Q9ULM0 1364 aa30.76■■■□□ 2.51
CHFR-217ENST00000540537 PNPLA6Q8IY17 1366 aa30.74■■■□□ 2.51
CHFR-217ENST00000540537 SOS2Q07890 1332 aaPredicted RBP30.73■■■□□ 2.51
CHFR-217ENST00000540537 NUTM2BA6NNL0 878 aaPredicted RBP30.7■■■□□ 2.51
CHFR-217ENST00000540537 NUTM2EB1AL46 878 aaPredicted RBP30.7■■■□□ 2.51
CHFR-217ENST00000540537 NUTM2AQ8IVF1 878 aaPredicted RBP30.7■■■□□ 2.51
CHFR-217ENST00000540537 STAC3Q96MF2 364 aa30.7■■■□□ 2.51
CHFR-217ENST00000540537 FMN2Q9NZ56 1722 aa30.68■■■□□ 2.5
CHFR-217ENST00000540537 ESCO1Q5FWF5 840 aa30.68■■■□□ 2.5
CHFR-217ENST00000540537 DLC1Q96QB1 1528 aa30.68■■■□□ 2.5
CHFR-217ENST00000540537 ADGRB1O14514 1584 aa30.67■■■□□ 2.5
CHFR-217ENST00000540537 ZNF772Q68DY9 489 aaPredicted RBP30.67■■■□□ 2.5
CHFR-217ENST00000540537 DCAF11Q8TEB1 546 aa30.67■■■□□ 2.5
CHFR-217ENST00000540537 NPHP3Q7Z494 1330 aa30.66■■■□□ 2.5
CHFR-217ENST00000540537 KDM2AQ9Y2K7 1162 aa30.65■■■□□ 2.5
CHFR-217ENST00000540537 NUTM2FA1L443 756 aa30.62■■■□□ 2.49
CHFR-217ENST00000540537 PRAM1Q96QH2 718 aa30.61■■■□□ 2.49
CHFR-217ENST00000540537 PXDNQ92626 1479 aa30.61■■■□□ 2.49
CHFR-217ENST00000540537 KIF1AQ12756 1690 aa30.58■■■□□ 2.49
CHFR-217ENST00000540537 FOXO3O43524 673 aa30.58■■■□□ 2.49
CHFR-217ENST00000540537 COL22A1Q8NFW1 1626 aaPredicted RBP30.58■■■□□ 2.49
CHFR-217ENST00000540537 POGKQ9P215 609 aa30.57■■■□□ 2.48
CHFR-217ENST00000540537 AFF2P51816 1311 aa30.56■■■□□ 2.48
CHFR-217ENST00000540537 SAFB2Q14151 953 aaKnown RBP eCLIP30.55■■■□□ 2.48
CHFR-217ENST00000540537 ADGRB2O60241 1585 aa30.54■■■□□ 2.48
CHFR-217ENST00000540537 C8orf37Q96NL8 207 aa30.53■■■□□ 2.48
CHFR-217ENST00000540537 TRAK1Q9UPV9 953 aa30.53■■■□□ 2.48
CHFR-217ENST00000540537 RGPD8O14715 1765 aaPredicted RBP30.52■■■□□ 2.48
CHFR-217ENST00000540537 XPCQ01831 940 aaPredicted RBP30.51■■■□□ 2.47
CHFR-217ENST00000540537 ADAMTS2O95450 1211 aa30.49■■■□□ 2.47
CHFR-217ENST00000540537 ANKARQ7Z5J8 1434 aa30.48■■■□□ 2.47
CHFR-217ENST00000540537 RXRBP28702 533 aa30.48■■■□□ 2.47
CHFR-217ENST00000540537 PHF8Q9UPP1 1060 aa30.47■■■□□ 2.47
CHFR-217ENST00000540537 KIAA1210Q9ULL0 1709 aa30.45■■■□□ 2.47
CHFR-217ENST00000540537 NGLY1Q96IV0 654 aa30.45■■■□□ 2.47
CHFR-217ENST00000540537 ARHGEF28Q8N1W1 1705 aaKnown RBP30.44■■■□□ 2.46
CHFR-217ENST00000540537 CDK12Q9NYV4 1490 aaPredicted RBP30.44■■■□□ 2.46
CHFR-217ENST00000540537 USP32Q8NFA0 1604 aa30.44■■■□□ 2.46
CHFR-217ENST00000540537 SPATA31A3Q5VYP0 1347 aa30.44■■■□□ 2.46
CHFR-217ENST00000540537 EIF3AQ14152 1382 aaKnown RBP30.43■■■□□ 2.46
CHFR-217ENST00000540537 KRT28Q7Z3Y7 464 aa30.43■■■□□ 2.46
CHFR-217ENST00000540537 MINK1Q8N4C8 1332 aaPredicted RBP30.42■■■□□ 2.46
CHFR-217ENST00000540537 HIRIP3Q9BW71 556 aaPredicted RBP30.41■■■□□ 2.46
CHFR-217ENST00000540537 QTRT2Q9H974 415 aaKnown RBP30.4■■■□□ 2.46
CHFR-217ENST00000540537 MARF1Q9Y4F3 1742 aaKnown RBP30.39■■■□□ 2.46
CHFR-217ENST00000540537 TULP4Q9NRJ4 1543 aa30.39■■■□□ 2.46
CHFR-217ENST00000540537 PSME1Q06323 249 aa30.39■■■□□ 2.46
CHFR-217ENST00000540537 FNBP4Q8N3X1 1017 aaPredicted RBP30.38■■■□□ 2.45
CHFR-217ENST00000540537 TNS3Q68CZ2 1445 aa30.38■■■□□ 2.45
CHFR-217ENST00000540537 WASLO00401 505 aaPredicted RBP30.37■■■□□ 2.45
CHFR-217ENST00000540537 RBM6P78332 1123 aaKnown RBP30.37■■■□□ 2.45
CHFR-217ENST00000540537 SBNO1A3KN83 1393 aa30.37■■■□□ 2.45
CHFR-217ENST00000540537 USP21Q9UK80 565 aa30.35■■■□□ 2.45
CHFR-217ENST00000540537 PRR36Q9H6K5 1346 aa30.34■■■□□ 2.45
CHFR-217ENST00000540537 PMFBP1Q8TBY8 1022 aa30.33■■■□□ 2.45
CHFR-217ENST00000540537 TRPC5Q9UL62 973 aaPredicted RBP30.32■■■□□ 2.44
CHFR-217ENST00000540537 ARHGEF10O15013 1369 aa30.3■■■□□ 2.44
CHFR-217ENST00000540537 RGS12O14924 1447 aa30.3■■■□□ 2.44
CHFR-217ENST00000540537 ATRNO75882 1429 aa30.3■■■□□ 2.44
CHFR-217ENST00000540537 NBPF1Q3BBV0 1214 aa30.29■■■□□ 2.44
CHFR-217ENST00000540537 L3MBTL2Q969R5 705 aa30.28■■■□□ 2.44
CHFR-217ENST00000540537 ITSN1Q15811 1721 aa30.27■■■□□ 2.44
CHFR-217ENST00000540537 TRPM3Q9HCF6 1732 aaPredicted RBP30.27■■■□□ 2.44
CHFR-217ENST00000540537 GPRASP1Q5JY77 1395 aa30.27■■■□□ 2.44
CHFR-217ENST00000540537 ATP7BP35670 1465 aa30.26■■■□□ 2.44
CHFR-217ENST00000540537 BCL9LQ86UU0 1499 aa30.26■■■□□ 2.44
CHFR-217ENST00000540537 SIN3AQ96ST3 1273 aa30.25■■■□□ 2.43
CHFR-217ENST00000540537 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.24■■■□□ 2.43
CHFR-217ENST00000540537 ABCA3Q99758 1704 aa30.23■■■□□ 2.43
CHFR-217ENST00000540537 LMOD2Q6P5Q4 547 aa30.23■■■□□ 2.43
CHFR-217ENST00000540537 SLIT2O94813 1529 aa30.22■■■□□ 2.43
CHFR-217ENST00000540537 HAP1P54257 671 aaPredicted RBP30.22■■■□□ 2.43
CHFR-217ENST00000540537 UPF1Q92900 1129 aaKnown RBP eCLIP30.22■■■□□ 2.43
CHFR-217ENST00000540537 NUDT16Q96DE0 195 aaKnown RBP30.22■■■□□ 2.43
CHFR-217ENST00000540537 ALS2Q96Q42 1657 aa30.21■■■□□ 2.43
CHFR-217ENST00000540537 CDK19Q9BWU1 502 aa30.21■■■□□ 2.43
CHFR-217ENST00000540537 NGDNQ8NEJ9 315 aaKnown RBP30.2■■■□□ 2.43
CHFR-217ENST00000540537 CABLES1Q8TDN4 633 aa30.2■■■□□ 2.43
CHFR-217ENST00000540537 NEUROD1Q13562 356 aa30.18■■■□□ 2.42
CHFR-217ENST00000540537 CENPJQ9HC77 1338 aaPredicted RBP30.18■■■□□ 2.42
CHFR-217ENST00000540537 TOPAZ1Q8N9V7 1692 aa30.17■■■□□ 2.42
CHFR-217ENST00000540537 UNC5CLQ8IV45 518 aa30.17■■■□□ 2.42
CHFR-217ENST00000540537 TRPM1Q7Z4N2 1603 aa30.16■■■□□ 2.42
CHFR-217ENST00000540537 PLEKHG5O94827 1062 aa30.14■■■□□ 2.42
CHFR-217ENST00000540537 NWD2Q9ULI1 1742 aa30.13■■■□□ 2.41
CHFR-217ENST00000540537 GJD4Q96KN9 370 aaPredicted RBP30.13■■■□□ 2.41
CHFR-217ENST00000540537 CCDC61Q9Y6R9 512 aa30.13■■■□□ 2.41
CHFR-217ENST00000540537 PLCH1Q4KWH8 1693 aa30.13■■■□□ 2.41
CHFR-217ENST00000540537 QRICH2Q9H0J4 1663 aa30.12■■■□□ 2.41
CHFR-217ENST00000540537 POLR3AO14802 1390 aaPredicted RBP30.12■■■□□ 2.41
CHFR-217ENST00000540537 PLEKHG3A1L390 1219 aa30.09■■■□□ 2.41
CHFR-217ENST00000540537 PAK3O75914 559 aaPredicted RBP30.09■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms