RNA–Protein interactions for RNA: ENST00000540090.5

LPCAT3-210, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 1 (best)

Gene LPCAT3, Length 974 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-210ENST00000540090 NPHP3Q7Z494 1330 aa30.04■■■□□ 2.4
LPCAT3-210ENST00000540090 ATAD2Q6PL18 1390 aa30.02■■■□□ 2.4
LPCAT3-210ENST00000540090 ADGRF5Q8IZF2 1346 aa30■■■□□ 2.39
LPCAT3-210ENST00000540090 FOXD1Q16676 465 aa30■■■□□ 2.39
LPCAT3-210ENST00000540090 ATRNO75882 1429 aa29.99■■■□□ 2.39
LPCAT3-210ENST00000540090 FOXO3O43524 673 aa29.99■■■□□ 2.39
LPCAT3-210ENST00000540090 PPLO60437 1756 aa29.98■■■□□ 2.39
LPCAT3-210ENST00000540090 SRCAPQ6ZRS2 3230 aa29.98■■■□□ 2.39
LPCAT3-210ENST00000540090 MYOM2P54296 1465 aa29.98■■■□□ 2.39
LPCAT3-210ENST00000540090 COL22A1Q8NFW1 1626 aaPredicted RBP29.97■■■□□ 2.39
LPCAT3-210ENST00000540090 CDC42BPGQ6DT37 1551 aa29.96■■■□□ 2.39
LPCAT3-210ENST00000540090 WAPLQ7Z5K2 1190 aa29.96■■■□□ 2.39
LPCAT3-210ENST00000540090 PXDNQ92626 1479 aa29.95■■■□□ 2.39
LPCAT3-210ENST00000540090 RGL3Q3MIN7 710 aa29.95■■■□□ 2.39
LPCAT3-210ENST00000540090 STK26Q9P289 416 aa29.95■■■□□ 2.39
LPCAT3-210ENST00000540090 LRPPRCP42704 1394 aaKnown RBP29.94■■■□□ 2.38
LPCAT3-210ENST00000540090 XPCQ01831 940 aaPredicted RBP29.94■■■□□ 2.38
LPCAT3-210ENST00000540090 TECPR2O15040 1411 aa29.94■■■□□ 2.38
LPCAT3-210ENST00000540090 BCL9LQ86UU0 1499 aa29.93■■■□□ 2.38
LPCAT3-210ENST00000540090 ABCC11Q96J66 1382 aa29.92■■■□□ 2.38
LPCAT3-210ENST00000540090 ANKRD30BQ9BXX2 1392 aa29.91■■■□□ 2.38
LPCAT3-210ENST00000540090 CCDC144AA2RUR9 1427 aa29.91■■■□□ 2.38
LPCAT3-210ENST00000540090 NUTM2FA1L443 756 aa29.91■■■□□ 2.38
LPCAT3-210ENST00000540090 SPATA31E1Q6ZUB1 1445 aa29.9■■■□□ 2.38
LPCAT3-210ENST00000540090 TMEM132EQ6IEE7 984 aa29.9■■■□□ 2.38
LPCAT3-210ENST00000540090 GJD4Q96KN9 370 aaPredicted RBP29.89■■■□□ 2.38
LPCAT3-210ENST00000540090 CCDC125Q86Z20 511 aa29.87■■■□□ 2.37
LPCAT3-210ENST00000540090 MPHOSPH9Q99550 1183 aa29.87■■■□□ 2.37
LPCAT3-210ENST00000540090 PLEKHH1Q9ULM0 1364 aa29.87■■■□□ 2.37
LPCAT3-210ENST00000540090 EP400Q96L91 3159 aa29.84■■■□□ 2.37
LPCAT3-210ENST00000540090 SIRT1Q96EB6 747 aa29.84■■■□□ 2.37
LPCAT3-210ENST00000540090 SPATA31A3Q5VYP0 1347 aa29.84■■■□□ 2.37
LPCAT3-210ENST00000540090 UNC5CLQ8IV45 518 aa29.82■■■□□ 2.36
LPCAT3-210ENST00000540090 ZRANB1Q9UGI0 708 aa29.82■■■□□ 2.36
LPCAT3-210ENST00000540090 PIK3C2GO75747 1445 aa29.81■■■□□ 2.36
LPCAT3-210ENST00000540090 KRT28Q7Z3Y7 464 aa29.8■■■□□ 2.36
LPCAT3-210ENST00000540090 YTHDC2Q9H6S0 1430 aaKnown RBP29.79■■■□□ 2.36
LPCAT3-210ENST00000540090 C14orf93Q9H972 538 aaKnown RBP29.78■■■□□ 2.36
LPCAT3-210ENST00000540090 SLIT2O94813 1529 aa29.77■■■□□ 2.36
LPCAT3-210ENST00000540090 MARF1Q9Y4F3 1742 aaKnown RBP29.76■■■□□ 2.35
LPCAT3-210ENST00000540090 KNDC1Q76NI1 1749 aa29.74■■■□□ 2.35
LPCAT3-210ENST00000540090 IFT172Q9UG01 1749 aa29.74■■■□□ 2.35
LPCAT3-210ENST00000540090 PHF8Q9UPP1 1060 aa29.73■■■□□ 2.35
LPCAT3-210ENST00000540090 RALGAPBQ86X10 1494 aa29.73■■■□□ 2.35
LPCAT3-210ENST00000540090 FMN2Q9NZ56 1722 aa29.72■■■□□ 2.35
LPCAT3-210ENST00000540090 PSME1Q06323 249 aa29.72■■■□□ 2.35
LPCAT3-210ENST00000540090 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.69■■■□□ 2.34
LPCAT3-210ENST00000540090 CFAP70Q5T0N1 1121 aa29.69■■■□□ 2.34
LPCAT3-210ENST00000540090 KIF1AQ12756 1690 aa29.69■■■□□ 2.34
LPCAT3-210ENST00000540090 DHX57Q6P158 1386 aaKnown RBP29.68■■■□□ 2.34
LPCAT3-210ENST00000540090 GLI3P10071 1580 aa29.68■■■□□ 2.34
LPCAT3-210ENST00000540090 VPS72Q15906 364 aa29.67■■■□□ 2.34
LPCAT3-210ENST00000540090 CABLES1Q8TDN4 633 aa29.67■■■□□ 2.34
LPCAT3-210ENST00000540090 TNS3Q68CZ2 1445 aa29.66■■■□□ 2.34
LPCAT3-210ENST00000540090 HAP1P54257 671 aaPredicted RBP29.66■■■□□ 2.34
LPCAT3-210ENST00000540090 ACIN1Q9UKV3 1341 aaKnown RBP29.66■■■□□ 2.34
LPCAT3-210ENST00000540090 SBNO1A3KN83 1393 aa29.65■■■□□ 2.34
LPCAT3-210ENST00000540090 BLMP54132 1417 aaPredicted RBP29.65■■■□□ 2.34
LPCAT3-210ENST00000540090 SEPT12Q8IYM1 358 aa29.65■■■□□ 2.34
LPCAT3-210ENST00000540090 NRXN1Q9ULB1 1477 aa29.65■■■□□ 2.34
LPCAT3-210ENST00000540090 ONECUT3O60422 494 aaPredicted RBP29.64■■■□□ 2.34
LPCAT3-210ENST00000540090 PRAM1Q96QH2 718 aa29.64■■■□□ 2.34
LPCAT3-210ENST00000540090 USP32Q8NFA0 1604 aa29.63■■■□□ 2.33
LPCAT3-210ENST00000540090 SAFB2Q14151 953 aaKnown RBP eCLIP29.61■■■□□ 2.33
LPCAT3-210ENST00000540090 LMOD2Q6P5Q4 547 aa29.6■■■□□ 2.33
LPCAT3-210ENST00000540090 ARHGEF10O15013 1369 aa29.6■■■□□ 2.33
LPCAT3-210ENST00000540090 FAM83GA6ND36 823 aa29.58■■■□□ 2.33
LPCAT3-210ENST00000540090 PLEKHG5O94827 1062 aa29.58■■■□□ 2.33
LPCAT3-210ENST00000540090 DEFB132Q7Z7B7 95 aa29.58■■■□□ 2.33
LPCAT3-210ENST00000540090 PMFBP1Q8TBY8 1022 aa29.57■■■□□ 2.32
LPCAT3-210ENST00000540090 POGKQ9P215 609 aa29.57■■■□□ 2.32
LPCAT3-210ENST00000540090 SF3B2Q13435 895 aaKnown RBP29.56■■■□□ 2.32
LPCAT3-210ENST00000540090 CCDC9Q9Y3X0 531 aaKnown RBP29.56■■■□□ 2.32
LPCAT3-210ENST00000540090 RGPD8O14715 1765 aaPredicted RBP29.56■■■□□ 2.32
LPCAT3-210ENST00000540090 KRT27Q7Z3Y8 459 aa29.55■■■□□ 2.32
LPCAT3-210ENST00000540090 ANKARQ7Z5J8 1434 aa29.54■■■□□ 2.32
LPCAT3-210ENST00000540090 DLC1Q96QB1 1528 aa29.52■■■□□ 2.32
LPCAT3-210ENST00000540090 BRWD3Q6RI45 1802 aa29.5■■■□□ 2.31
LPCAT3-210ENST00000540090 NWD2Q9ULI1 1742 aa29.49■■■□□ 2.31
LPCAT3-210ENST00000540090 TRAK1Q9UPV9 953 aa29.48■■■□□ 2.31
LPCAT3-210ENST00000540090 HIRIP3Q9BW71 556 aaPredicted RBP29.47■■■□□ 2.31
LPCAT3-210ENST00000540090 BTG4Q9NY30 223 aa29.46■■■□□ 2.31
LPCAT3-210ENST00000540090 PLCH1Q4KWH8 1693 aa29.46■■■□□ 2.31
LPCAT3-210ENST00000540090 PRR36Q9H6K5 1346 aa29.45■■■□□ 2.3
LPCAT3-210ENST00000540090 ADGRB1O14514 1584 aa29.44■■■□□ 2.3
LPCAT3-210ENST00000540090 GPRASP1Q5JY77 1395 aa29.44■■■□□ 2.3
LPCAT3-210ENST00000540090 FAM98CQ17RN3 349 aaKnown RBP29.44■■■□□ 2.3
LPCAT3-210ENST00000540090 ADGRB2O60241 1585 aa29.43■■■□□ 2.3
LPCAT3-210ENST00000540090 MINK1Q8N4C8 1332 aaPredicted RBP29.43■■■□□ 2.3
LPCAT3-210ENST00000540090 ABCA3Q99758 1704 aa29.42■■■□□ 2.3
LPCAT3-210ENST00000540090 A0A0G2JS52 829 aa29.42■■■□□ 2.3
LPCAT3-210ENST00000540090 WASLO00401 505 aaPredicted RBP29.42■■■□□ 2.3
LPCAT3-210ENST00000540090 MYT1Q01538 1121 aa29.42■■■□□ 2.3
LPCAT3-210ENST00000540090 EIF3AQ14152 1382 aaKnown RBP29.41■■■□□ 2.3
LPCAT3-210ENST00000540090 BAG6P46379 1132 aa29.4■■■□□ 2.3
LPCAT3-210ENST00000540090 KDM2AQ9Y2K7 1162 aa29.39■■■□□ 2.3
LPCAT3-210ENST00000540090 RAB3GAP2Q9H2M9 1393 aa29.39■■■□□ 2.29
LPCAT3-210ENST00000540090 TRPM3Q9HCF6 1732 aaPredicted RBP29.37■■■□□ 2.29
LPCAT3-210ENST00000540090 NGDNQ8NEJ9 315 aaKnown RBP29.37■■■□□ 2.29
LPCAT3-210ENST00000540090 DCAF11Q8TEB1 546 aa29.37■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms