RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 PRAG1Q86YV5 1406 aa17.69■□□□□ 0.42
CLSTN3-209ENST00000539982 RPGRIP1LQ68CZ1 1315 aa17.69■□□□□ 0.42
CLSTN3-209ENST00000539982 NPHP3Q7Z494 1330 aa17.69■□□□□ 0.42
CLSTN3-209ENST00000539982 HFM1A2PYH4 1435 aa17.68■□□□□ 0.42
CLSTN3-209ENST00000539982 GJD4Q96KN9 370 aaPredicted RBP17.68■□□□□ 0.42
CLSTN3-209ENST00000539982 BCL9LQ86UU0 1499 aa17.68■□□□□ 0.42
CLSTN3-209ENST00000539982 MYOM2P54296 1465 aa17.67■□□□□ 0.42
CLSTN3-209ENST00000539982 FOXO3O43524 673 aa17.66■□□□□ 0.42
CLSTN3-209ENST00000539982 EP400Q96L91 3159 aa17.65■□□□□ 0.42
CLSTN3-209ENST00000539982 PXDNQ92626 1479 aa17.63■□□□□ 0.41
CLSTN3-209ENST00000539982 XPCQ01831 940 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-209ENST00000539982 LRPPRCP42704 1394 aaKnown RBP17.63■□□□□ 0.41
CLSTN3-209ENST00000539982 PPARGC1BQ86YN6 1023 aaKnown RBP17.62■□□□□ 0.41
CLSTN3-209ENST00000539982 UNC5CLQ8IV45 518 aa17.61■□□□□ 0.41
CLSTN3-209ENST00000539982 MARF1Q9Y4F3 1742 aaKnown RBP17.61■□□□□ 0.41
CLSTN3-209ENST00000539982 CDC42BPGQ6DT37 1551 aa17.6■□□□□ 0.41
CLSTN3-209ENST00000539982 NAIPQ13075 1403 aa17.59■□□□□ 0.41
CLSTN3-209ENST00000539982 BLMP54132 1417 aaPredicted RBP17.58■□□□□ 0.41
CLSTN3-209ENST00000539982 NUTM2FA1L443 756 aa17.58■□□□□ 0.4
CLSTN3-209ENST00000539982 WAPLQ7Z5K2 1190 aa17.58■□□□□ 0.4
CLSTN3-209ENST00000539982 SLC4A1APQ9BWU0 796 aaKnown RBP17.57■□□□□ 0.4
CLSTN3-209ENST00000539982 PPLO60437 1756 aa17.57■□□□□ 0.4
CLSTN3-209ENST00000539982 RALGAPBQ86X10 1494 aa17.56■□□□□ 0.4
CLSTN3-209ENST00000539982 SPATA31A3Q5VYP0 1347 aa17.56■□□□□ 0.4
CLSTN3-209ENST00000539982 STK26Q9P289 416 aa17.56■□□□□ 0.4
CLSTN3-209ENST00000539982 SLIT2O94813 1529 aa17.56■□□□□ 0.4
CLSTN3-209ENST00000539982 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-209ENST00000539982 GLI3P10071 1580 aa17.54■□□□□ 0.4
CLSTN3-209ENST00000539982 ADGRF5Q8IZF2 1346 aa17.54■□□□□ 0.4
CLSTN3-209ENST00000539982 SF3B2Q13435 895 aaKnown RBP17.54■□□□□ 0.4
CLSTN3-209ENST00000539982 DEFB132Q7Z7B7 95 aa17.54■□□□□ 0.4
CLSTN3-209ENST00000539982 KRT28Q7Z3Y7 464 aa17.53■□□□□ 0.4
CLSTN3-209ENST00000539982 SEPT12Q8IYM1 358 aa17.53■□□□□ 0.4
CLSTN3-209ENST00000539982 TECPR2O15040 1411 aa17.53■□□□□ 0.4
CLSTN3-209ENST00000539982 ABCC11Q96J66 1382 aa17.53■□□□□ 0.4
CLSTN3-209ENST00000539982 ONECUT3O60422 494 aaPredicted RBP17.52■□□□□ 0.4
CLSTN3-209ENST00000539982 VPS72Q15906 364 aa17.51■□□□□ 0.39
CLSTN3-209ENST00000539982 CCDC144AA2RUR9 1427 aa17.5■□□□□ 0.39
CLSTN3-209ENST00000539982 RRBP1Q9P2E9 1410 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-209ENST00000539982 RGL3Q3MIN7 710 aa17.5■□□□□ 0.39
CLSTN3-209ENST00000539982 TMEM132EQ6IEE7 984 aa17.5■□□□□ 0.39
CLSTN3-209ENST00000539982 PLEKHH1Q9ULM0 1364 aa17.5■□□□□ 0.39
CLSTN3-209ENST00000539982 HAP1P54257 671 aaPredicted RBP17.49■□□□□ 0.39
CLSTN3-209ENST00000539982 PSME1Q06323 249 aa17.49■□□□□ 0.39
CLSTN3-209ENST00000539982 SIRT1Q96EB6 747 aa17.49■□□□□ 0.39
CLSTN3-209ENST00000539982 BRWD3Q6RI45 1802 aa17.49■□□□□ 0.39
CLSTN3-209ENST00000539982 ANKRD30BQ9BXX2 1392 aa17.48■□□□□ 0.39
CLSTN3-209ENST00000539982 USP32Q8NFA0 1604 aa17.47■□□□□ 0.39
CLSTN3-209ENST00000539982 KRT27Q7Z3Y8 459 aa17.47■□□□□ 0.39
CLSTN3-209ENST00000539982 CABLES1Q8TDN4 633 aa17.47■□□□□ 0.39
CLSTN3-209ENST00000539982 PHF8Q9UPP1 1060 aa17.47■□□□□ 0.39
CLSTN3-209ENST00000539982 KIF1AQ12756 1690 aa17.47■□□□□ 0.39
CLSTN3-209ENST00000539982 FMN2Q9NZ56 1722 aa17.47■□□□□ 0.39
CLSTN3-209ENST00000539982 CCDC9Q9Y3X0 531 aaKnown RBP17.46■□□□□ 0.39
CLSTN3-209ENST00000539982 TNS3Q68CZ2 1445 aa17.45■□□□□ 0.38
CLSTN3-209ENST00000539982 SPATA31E1Q6ZUB1 1445 aa17.45■□□□□ 0.38
CLSTN3-209ENST00000539982 YTHDC2Q9H6S0 1430 aaKnown RBP17.44■□□□□ 0.38
CLSTN3-209ENST00000539982 KNDC1Q76NI1 1749 aa17.44■□□□□ 0.38
CLSTN3-209ENST00000539982 SBNO1A3KN83 1393 aa17.43■□□□□ 0.38
CLSTN3-209ENST00000539982 FAM83GA6ND36 823 aa17.43■□□□□ 0.38
CLSTN3-209ENST00000539982 PLEKHG5O94827 1062 aa17.43■□□□□ 0.38
CLSTN3-209ENST00000539982 NWD2Q9ULI1 1742 aa17.42■□□□□ 0.38
CLSTN3-209ENST00000539982 PIK3C2GO75747 1445 aa17.42■□□□□ 0.38
CLSTN3-209ENST00000539982 BAG6P46379 1132 aa17.42■□□□□ 0.38
CLSTN3-209ENST00000539982 LMOD2Q6P5Q4 547 aa17.42■□□□□ 0.38
CLSTN3-209ENST00000539982 LRP5O75197 1615 aa17.42■□□□□ 0.38
CLSTN3-209ENST00000539982 C14orf93Q9H972 538 aaKnown RBP17.41■□□□□ 0.38
CLSTN3-209ENST00000539982 ARHGEF10O15013 1369 aa17.4■□□□□ 0.38
CLSTN3-209ENST00000539982 PSDA5PKW4 1024 aaPredicted RBP17.4■□□□□ 0.38
CLSTN3-209ENST00000539982 HRCP23327 699 aa17.4■□□□□ 0.38
CLSTN3-209ENST00000539982 IFT172Q9UG01 1749 aa17.4■□□□□ 0.38
CLSTN3-209ENST00000539982 RGPD8O14715 1765 aaPredicted RBP17.4■□□□□ 0.38
CLSTN3-209ENST00000539982 PLCH1Q4KWH8 1693 aa17.39■□□□□ 0.37
CLSTN3-209ENST00000539982 NRXN1Q9ULB1 1477 aa17.39■□□□□ 0.37
CLSTN3-209ENST00000539982 A0A0G2JS52 829 aa17.39■□□□□ 0.37
CLSTN3-209ENST00000539982 MYT1Q01538 1121 aa17.39■□□□□ 0.37
CLSTN3-209ENST00000539982 MPHOSPH9Q99550 1183 aa17.39■□□□□ 0.37
CLSTN3-209ENST00000539982 FAM98CQ17RN3 349 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-209ENST00000539982 DHX57Q6P158 1386 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-209ENST00000539982 PMFBP1Q8TBY8 1022 aa17.36■□□□□ 0.37
CLSTN3-209ENST00000539982 PRAM1Q96QH2 718 aa17.36■□□□□ 0.37
CLSTN3-209ENST00000539982 BTG4Q9NY30 223 aa17.36■□□□□ 0.37
CLSTN3-209ENST00000539982 EN1Q05925 392 aaPredicted RBP17.35■□□□□ 0.37
CLSTN3-209ENST00000539982 SAFB2Q14151 953 aaKnown RBP eCLIP17.35■□□□□ 0.37
CLSTN3-209ENST00000539982 CFAP70Q5T0N1 1121 aa17.35■□□□□ 0.37
CLSTN3-209ENST00000539982 ABCA3Q99758 1704 aa17.34■□□□□ 0.37
CLSTN3-209ENST00000539982 POGKQ9P215 609 aa17.33■□□□□ 0.36
CLSTN3-209ENST00000539982 ANKARQ7Z5J8 1434 aa17.32■□□□□ 0.36
CLSTN3-209ENST00000539982 SPATA31A5Q5VU36 1347 aa17.31■□□□□ 0.36
CLSTN3-209ENST00000539982 SPATA31A7Q8IWB4 1347 aa17.31■□□□□ 0.36
CLSTN3-209ENST00000539982 FAM182BQ5T319 152 aa17.31■□□□□ 0.36
CLSTN3-209ENST00000539982 NRAPQ86VF7 1730 aa17.3■□□□□ 0.36
CLSTN3-209ENST00000539982 R3HDM1Q15032 1099 aaKnown RBP17.3■□□□□ 0.36
CLSTN3-209ENST00000539982 GPRASP1Q5JY77 1395 aa17.29■□□□□ 0.36
CLSTN3-209ENST00000539982 COL14A1Q05707 1796 aaKnown RBP17.28■□□□□ 0.36
CLSTN3-209ENST00000539982 RGPD1P0DJD0 1748 aa17.28■□□□□ 0.36
CLSTN3-209ENST00000539982 DISP2A7MBM2 1401 aa17.28■□□□□ 0.36
CLSTN3-209ENST00000539982 DLC1Q96QB1 1528 aa17.27■□□□□ 0.36
CLSTN3-209ENST00000539982 ACIN1Q9UKV3 1341 aaKnown RBP17.27■□□□□ 0.36
CLSTN3-209ENST00000539982 TRPM3Q9HCF6 1732 aaPredicted RBP17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms