RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 USB1Q9BQ65 265 aaKnown RBP9.18□□□□□ -0.94
VPS13A-213ENST00000539950 AK7Q96M32 723 aa9.17□□□□□ -0.94
VPS13A-213ENST00000539950 PARP9Q8IXQ6 854 aa9.16□□□□□ -0.94
VPS13A-213ENST00000539950 SPIRE2Q8WWL2 714 aa9.16□□□□□ -0.94
VPS13A-213ENST00000539950 SYMPKQ92797 1274 aaKnown RBP9.16□□□□□ -0.94
VPS13A-213ENST00000539950 MMP16P51512 607 aa9.15□□□□□ -0.94
VPS13A-213ENST00000539950 PCDHGC3Q9UN70 934 aa9.15□□□□□ -0.94
VPS13A-213ENST00000539950 TNFRSF10AO00220 468 aa9.14□□□□□ -0.95
VPS13A-213ENST00000539950 GDF9O60383 454 aa9.14□□□□□ -0.95
VPS13A-213ENST00000539950 SLC24A1O60721 1099 aa9.14□□□□□ -0.95
VPS13A-213ENST00000539950 PRR20EP86478 221 aa9.14□□□□□ -0.95
VPS13A-213ENST00000539950 PRR20CP86479 221 aa9.14□□□□□ -0.95
VPS13A-213ENST00000539950 PRR20DP86480 221 aa9.14□□□□□ -0.95
VPS13A-213ENST00000539950 PRR20BP86481 221 aa9.14□□□□□ -0.95
VPS13A-213ENST00000539950 PRR20AP86496 221 aa9.14□□□□□ -0.95
VPS13A-213ENST00000539950 SLC24A3Q9HC58 644 aa9.14□□□□□ -0.95
VPS13A-213ENST00000539950 DXOO77932 396 aaKnown RBP9.13□□□□□ -0.95
VPS13A-213ENST00000539950 FDX1P10109 184 aa9.13□□□□□ -0.95
VPS13A-213ENST00000539950 MS4A1P11836 297 aa9.13□□□□□ -0.95
VPS13A-213ENST00000539950 NDUFV2P19404 249 aa9.13□□□□□ -0.95
VPS13A-213ENST00000539950 RPIAP49247 311 aa9.13□□□□□ -0.95
VPS13A-213ENST00000539950 TRAF7Q6Q0C0 670 aa9.13□□□□□ -0.95
VPS13A-213ENST00000539950 BEGAINQ9BUH8 593 aa9.13□□□□□ -0.95
VPS13A-213ENST00000539950 MOXD2PA6NHM9 499 aa9.12□□□□□ -0.95
VPS13A-213ENST00000539950 PKD2L1Q9P0L9 805 aa9.12□□□□□ -0.95
VPS13A-213ENST00000539950 PDE4DQ08499 809 aa9.1□□□□□ -0.95
VPS13A-213ENST00000539950 FOXC1Q12948 553 aa9.1□□□□□ -0.95
VPS13A-213ENST00000539950 C6orf229H3BNL8 230 aa9.09□□□□□ -0.95
VPS13A-213ENST00000539950 CD2BP2O95400 341 aaKnown RBP9.09□□□□□ -0.95
VPS13A-213ENST00000539950 RETREG3Q86VR2 466 aa9.09□□□□□ -0.95
VPS13A-213ENST00000539950 ZBTB24O43167 697 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-213ENST00000539950 CCDC24Q8N4L8 307 aa9.08□□□□□ -0.96
VPS13A-213ENST00000539950 BCANQ96GW7 911 aa9.08□□□□□ -0.96
VPS13A-213ENST00000539950 TBC1D2Q9BYX2 928 aa9.08□□□□□ -0.96
VPS13A-213ENST00000539950 JUNDP17535 347 aa9.07□□□□□ -0.96
VPS13A-213ENST00000539950 TRIM32Q13049 653 aa9.06□□□□□ -0.96
VPS13A-213ENST00000539950 PKDCCQ504Y2 493 aa9.05□□□□□ -0.96
VPS13A-213ENST00000539950 FAM187AA6NFU0 413 aa9.04□□□□□ -0.96
VPS13A-213ENST00000539950 RSBN1LQ6PCB5 846 aaPredicted RBP9.04□□□□□ -0.96
VPS13A-213ENST00000539950 PCDHB15Q9Y5E8 787 aa9.04□□□□□ -0.96
VPS13A-213ENST00000539950 DGAT1O75907 488 aa9.03□□□□□ -0.96
VPS13A-213ENST00000539950 MYT1Q01538 1121 aa9.03□□□□□ -0.96
VPS13A-213ENST00000539950 NUDT12Q9BQG2 462 aa9.03□□□□□ -0.96
VPS13A-213ENST00000539950 MTMR2Q13614 643 aa9.02□□□□□ -0.97
VPS13A-213ENST00000539950 DIXDC1Q155Q3 683 aa9.02□□□□□ -0.97
VPS13A-213ENST00000539950 PTCRAQ6ISU1 281 aaPredicted RBP9.02□□□□□ -0.97
VPS13A-213ENST00000539950 PRR7Q8TB68 274 aa9.02□□□□□ -0.97
VPS13A-213ENST00000539950 TOR4AQ9NXH8 423 aa9.02□□□□□ -0.97
VPS13A-213ENST00000539950 SPTLC1O15269 473 aa9.01□□□□□ -0.97
VPS13A-213ENST00000539950 GJA5P36382 358 aa9.01□□□□□ -0.97
VPS13A-213ENST00000539950 WNT7AO00755 349 aa9□□□□□ -0.97
VPS13A-213ENST00000539950 SKOR1P84550 965 aa9□□□□□ -0.97
VPS13A-213ENST00000539950 RIC3Q7Z5B4 369 aa9□□□□□ -0.97
VPS13A-213ENST00000539950 SPDYE5A6NIY4 337 aa8.99□□□□□ -0.97
VPS13A-213ENST00000539950 CCNYL3P0C7X3 344 aa8.99□□□□□ -0.97
VPS13A-213ENST00000539950 MYSM1Q5VVJ2 828 aa8.99□□□□□ -0.97
VPS13A-213ENST00000539950 CYP4X1Q8N118 509 aa8.99□□□□□ -0.97
VPS13A-213ENST00000539950 HRCP23327 699 aa8.98□□□□□ -0.97
VPS13A-213ENST00000539950 PTPRNQ16849 979 aa8.98□□□□□ -0.97
VPS13A-213ENST00000539950 CSPP1Q1MSJ5 1256 aa8.98□□□□□ -0.97
VPS13A-213ENST00000539950 CABLES1Q8TDN4 633 aa8.98□□□□□ -0.97
VPS13A-213ENST00000539950 MRGPRX2Q96LB1 330 aa8.98□□□□□ -0.97
VPS13A-213ENST00000539950 LIMD1Q9UGP4 676 aa8.98□□□□□ -0.97
VPS13A-213ENST00000539950 CFAP99D6REC4 459 aa8.97□□□□□ -0.97
VPS13A-213ENST00000539950 ST8SIA5O15466 376 aa8.96□□□□□ -0.98
VPS13A-213ENST00000539950 RC3H1Q5TC82 1133 aaKnown RBP8.96□□□□□ -0.98
VPS13A-213ENST00000539950 DESI1Q6ICB0 168 aa8.96□□□□□ -0.98
VPS13A-213ENST00000539950 ZBTB3Q9H5J0 574 aa8.96□□□□□ -0.98
VPS13A-213ENST00000539950 TTC24A2A3L6 582 aaPredicted RBP8.95□□□□□ -0.98
VPS13A-213ENST00000539950 WNT7BP56706 349 aa8.95□□□□□ -0.98
VPS13A-213ENST00000539950 SNIP1Q8TAD8 396 aaKnown RBP8.95□□□□□ -0.98
VPS13A-213ENST00000539950 AAASQ9NRG9 546 aa8.95□□□□□ -0.98
VPS13A-213ENST00000539950 EVA1BQ9NVM1 165 aa8.95□□□□□ -0.98
VPS13A-213ENST00000539950 SMPD1P17405 629 aa8.94□□□□□ -0.98
VPS13A-213ENST00000539950 QPCTQ16769 361 aa8.94□□□□□ -0.98
VPS13A-213ENST00000539950 PRPF38BQ5VTL8 546 aaKnown RBP8.94□□□□□ -0.98
VPS13A-213ENST00000539950 ZNF787Q6DD87 383 aa8.94□□□□□ -0.98
VPS13A-213ENST00000539950 GPBP1L1Q9HC44 474 aaPredicted RBP8.94□□□□□ -0.98
VPS13A-213ENST00000539950 J3QL48 77 aa8.93□□□□□ -0.98
VPS13A-213ENST00000539950 AVPP01185 164 aa8.93□□□□□ -0.98
VPS13A-213ENST00000539950 KCNH2Q12809 1159 aa8.93□□□□□ -0.98
VPS13A-213ENST00000539950 LYPD8Q6UX82 237 aa8.93□□□□□ -0.98
VPS13A-213ENST00000539950 UNC93B1Q9H1C4 597 aa8.93□□□□□ -0.98
VPS13A-213ENST00000539950 POTECB2RU33 542 aa8.92□□□□□ -0.98
VPS13A-213ENST00000539950 LILRB3O75022 631 aa8.91□□□□□ -0.98
VPS13A-213ENST00000539950 SH3BP2P78314 561 aa8.91□□□□□ -0.98
VPS13A-213ENST00000539950 TUSC1Q2TAM9 212 aa8.91□□□□□ -0.98
VPS13A-213ENST00000539950 LINC01559Q495D7 138 aa8.91□□□□□ -0.98
VPS13A-213ENST00000539950 CRIPAKQ8N1N5 446 aa8.91□□□□□ -0.98
VPS13A-213ENST00000539950 BAP1Q92560 729 aa8.91□□□□□ -0.98
VPS13A-213ENST00000539950 KDM4CQ9H3R0 1056 aa8.91□□□□□ -0.98
VPS13A-213ENST00000539950 POLR3EQ9NVU0 708 aa8.91□□□□□ -0.98
VPS13A-213ENST00000539950 NUTM2BA6NNL0 878 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-213ENST00000539950 NUTM2EB1AL46 878 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-213ENST00000539950 PER1O15534 1290 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-213ENST00000539950 CLK2P49760 499 aaKnown RBP8.9□□□□□ -0.98
VPS13A-213ENST00000539950 NUTM2DQ5VT03 806 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-213ENST00000539950 NUTM2AQ8IVF1 878 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-213ENST00000539950 DACH1Q9UI36 760 aa8.9□□□□□ -0.98
VPS13A-213ENST00000539950 RTL5Q5HYW3 569 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 228.8 ms