RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 SHPRHQ149N8 1683 aa16.88■□□□□ 0.29
RTN3-209ENST00000538995 DLC1Q96QB1 1528 aa16.87■□□□□ 0.29
RTN3-209ENST00000538995 ADGRB1O14514 1584 aa16.87■□□□□ 0.29
RTN3-209ENST00000538995 WAPLQ7Z5K2 1190 aa16.86■□□□□ 0.29
RTN3-209ENST00000538995 DCAF11Q8TEB1 546 aa16.86■□□□□ 0.29
RTN3-209ENST00000538995 PLEKHH1Q9ULM0 1364 aa16.86■□□□□ 0.29
RTN3-209ENST00000538995 LRRC59Q96AG4 307 aaKnown RBP16.85■□□□□ 0.29
RTN3-209ENST00000538995 LRP6O75581 1613 aa16.83■□□□□ 0.28
RTN3-209ENST00000538995 ORAI2Q96SN7 254 aa16.83■□□□□ 0.28
RTN3-209ENST00000538995 RGS17Q9UGC6 210 aaPredicted RBP16.83■□□□□ 0.28
RTN3-209ENST00000538995 SOS2Q07890 1332 aaPredicted RBP16.82■□□□□ 0.28
RTN3-209ENST00000538995 KDM2AQ9Y2K7 1162 aa16.82■□□□□ 0.28
RTN3-209ENST00000538995 NPHP3Q7Z494 1330 aa16.81■□□□□ 0.28
RTN3-209ENST00000538995 PNPLA6Q8IY17 1366 aa16.8■□□□□ 0.28
RTN3-209ENST00000538995 FMN2Q9NZ56 1722 aa16.8■□□□□ 0.28
RTN3-209ENST00000538995 DDX17Q92841 729 aaKnown RBP16.8■□□□□ 0.28
RTN3-209ENST00000538995 PRAM1Q96QH2 718 aa16.8■□□□□ 0.28
RTN3-209ENST00000538995 ESCO1Q5FWF5 840 aa16.79■□□□□ 0.28
RTN3-209ENST00000538995 ADGRB2O60241 1585 aa16.79■□□□□ 0.28
RTN3-209ENST00000538995 POGKQ9P215 609 aa16.78■□□□□ 0.28
RTN3-209ENST00000538995 MEX3CQ5U5Q3 659 aaKnown RBP16.77■□□□□ 0.28
RTN3-209ENST00000538995 PXDNQ92626 1479 aa16.77■□□□□ 0.28
RTN3-209ENST00000538995 KIF1AQ12756 1690 aa16.77■□□□□ 0.28
RTN3-209ENST00000538995 ANKARQ7Z5J8 1434 aa16.76■□□□□ 0.27
RTN3-209ENST00000538995 KIAA1210Q9ULL0 1709 aa16.76■□□□□ 0.27
RTN3-209ENST00000538995 EIF3AQ14152 1382 aaKnown RBP16.76■□□□□ 0.27
RTN3-209ENST00000538995 TRAK1Q9UPV9 953 aa16.75■□□□□ 0.27
RTN3-209ENST00000538995 SAFB2Q14151 953 aaKnown RBP eCLIP16.74■□□□□ 0.27
RTN3-209ENST00000538995 ZNF772Q68DY9 489 aaPredicted RBP16.74■□□□□ 0.27
RTN3-209ENST00000538995 POTEAQ6S8J7 498 aa16.74■□□□□ 0.27
RTN3-209ENST00000538995 NUTM2FA1L443 756 aa16.73■□□□□ 0.27
RTN3-209ENST00000538995 NUTM2BA6NNL0 878 aaPredicted RBP16.73■□□□□ 0.27
RTN3-209ENST00000538995 NUTM2EB1AL46 878 aaPredicted RBP16.73■□□□□ 0.27
RTN3-209ENST00000538995 FOXO3O43524 673 aa16.73■□□□□ 0.27
RTN3-209ENST00000538995 NUTM2AQ8IVF1 878 aaPredicted RBP16.73■□□□□ 0.27
RTN3-209ENST00000538995 COL22A1Q8NFW1 1626 aaPredicted RBP16.73■□□□□ 0.27
RTN3-209ENST00000538995 ARHGEF28Q8N1W1 1705 aaKnown RBP16.7■□□□□ 0.26
RTN3-209ENST00000538995 TRIM26Q12899 539 aaPredicted RBP16.7■□□□□ 0.26
RTN3-209ENST00000538995 PHF8Q9UPP1 1060 aa16.7■□□□□ 0.26
RTN3-209ENST00000538995 TULP4Q9NRJ4 1543 aa16.7■□□□□ 0.26
RTN3-209ENST00000538995 MINK1Q8N4C8 1332 aaPredicted RBP16.69■□□□□ 0.26
RTN3-209ENST00000538995 WASLO00401 505 aaPredicted RBP16.68■□□□□ 0.26
RTN3-209ENST00000538995 L3MBTL2Q969R5 705 aa16.68■□□□□ 0.26
RTN3-209ENST00000538995 USP32Q8NFA0 1604 aa16.67■□□□□ 0.26
RTN3-209ENST00000538995 XPCQ01831 940 aaPredicted RBP16.67■□□□□ 0.26
RTN3-209ENST00000538995 HIRIP3Q9BW71 556 aaPredicted RBP16.67■□□□□ 0.26
RTN3-209ENST00000538995 AFF2P51816 1311 aa16.67■□□□□ 0.26
RTN3-209ENST00000538995 SPATA31A3Q5VYP0 1347 aa16.67■□□□□ 0.26
RTN3-209ENST00000538995 SBNO1A3KN83 1393 aa16.66■□□□□ 0.26
RTN3-209ENST00000538995 PSME1Q06323 249 aa16.66■□□□□ 0.26
RTN3-209ENST00000538995 TNS3Q68CZ2 1445 aa16.66■□□□□ 0.26
RTN3-209ENST00000538995 SIN3AQ96ST3 1273 aa16.66■□□□□ 0.26
RTN3-209ENST00000538995 KRT28Q7Z3Y7 464 aa16.65■□□□□ 0.26
RTN3-209ENST00000538995 POTEDQ86YR6 584 aa16.65■□□□□ 0.26
RTN3-209ENST00000538995 C8orf37Q96NL8 207 aa16.65■□□□□ 0.26
RTN3-209ENST00000538995 NBPF1Q3BBV0 1214 aa16.64■□□□□ 0.25
RTN3-209ENST00000538995 PRR36Q9H6K5 1346 aa16.64■□□□□ 0.25
RTN3-209ENST00000538995 ATP7BP35670 1465 aa16.63■□□□□ 0.25
RTN3-209ENST00000538995 CDK12Q9NYV4 1490 aaPredicted RBP16.63■□□□□ 0.25
RTN3-209ENST00000538995 ADAMTS2O95450 1211 aa16.63■□□□□ 0.25
RTN3-209ENST00000538995 ARHGEF10O15013 1369 aa16.63■□□□□ 0.25
RTN3-209ENST00000538995 RGPD8O14715 1765 aaPredicted RBP16.62■□□□□ 0.25
RTN3-209ENST00000538995 NEUROD1Q13562 356 aa16.62■□□□□ 0.25
RTN3-209ENST00000538995 NGLY1Q96IV0 654 aa16.62■□□□□ 0.25
RTN3-209ENST00000538995 RXRBP28702 533 aa16.61■□□□□ 0.25
RTN3-209ENST00000538995 CENPJQ9HC77 1338 aaPredicted RBP16.61■□□□□ 0.25
RTN3-209ENST00000538995 GPRASP1Q5JY77 1395 aa16.61■□□□□ 0.25
RTN3-209ENST00000538995 TRPM1Q7Z4N2 1603 aa16.6■□□□□ 0.25
RTN3-209ENST00000538995 FNBP4Q8N3X1 1017 aaPredicted RBP16.6■□□□□ 0.25
RTN3-209ENST00000538995 PMFBP1Q8TBY8 1022 aa16.6■□□□□ 0.25
RTN3-209ENST00000538995 ITSN1Q15811 1721 aa16.59■□□□□ 0.25
RTN3-209ENST00000538995 NUDT16Q96DE0 195 aaKnown RBP16.58■□□□□ 0.24
RTN3-209ENST00000538995 CDK19Q9BWU1 502 aa16.58■□□□□ 0.24
RTN3-209ENST00000538995 ROCK2O75116 1388 aaKnown RBP16.58■□□□□ 0.24
RTN3-209ENST00000538995 TRPM3Q9HCF6 1732 aaPredicted RBP16.57■□□□□ 0.24
RTN3-209ENST00000538995 RBM6P78332 1123 aaKnown RBP16.57■□□□□ 0.24
RTN3-209ENST00000538995 QTRT2Q9H974 415 aaKnown RBP16.57■□□□□ 0.24
RTN3-209ENST00000538995 USP21Q9UK80 565 aa16.57■□□□□ 0.24
RTN3-209ENST00000538995 TOPAZ1Q8N9V7 1692 aa16.56■□□□□ 0.24
RTN3-209ENST00000538995 TONSLQ96HA7 1378 aa16.56■□□□□ 0.24
RTN3-209ENST00000538995 NGDNQ8NEJ9 315 aaKnown RBP16.56■□□□□ 0.24
RTN3-209ENST00000538995 TRPC5Q9UL62 973 aaPredicted RBP16.56■□□□□ 0.24
RTN3-209ENST00000538995 MARF1Q9Y4F3 1742 aaKnown RBP16.56■□□□□ 0.24
RTN3-209ENST00000538995 ATRNO75882 1429 aa16.55■□□□□ 0.24
RTN3-209ENST00000538995 POLR3AO14802 1390 aaPredicted RBP16.55■□□□□ 0.24
RTN3-209ENST00000538995 CCDC61Q9Y6R9 512 aa16.55■□□□□ 0.24
RTN3-209ENST00000538995 QRICH2Q9H0J4 1663 aa16.54■□□□□ 0.24
RTN3-209ENST00000538995 SLIT2O94813 1529 aa16.54■□□□□ 0.24
RTN3-209ENST00000538995 BCL9LQ86UU0 1499 aa16.54■□□□□ 0.24
RTN3-209ENST00000538995 ALS2Q96Q42 1657 aa16.53■□□□□ 0.24
RTN3-209ENST00000538995 PLEKHG3A1L390 1219 aa16.53■□□□□ 0.24
RTN3-209ENST00000538995 HAP1P54257 671 aaPredicted RBP16.53■□□□□ 0.24
RTN3-209ENST00000538995 LMOD2Q6P5Q4 547 aa16.53■□□□□ 0.24
RTN3-209ENST00000538995 RGS12O14924 1447 aa16.53■□□□□ 0.24
RTN3-209ENST00000538995 ABCA3Q99758 1704 aa16.52■□□□□ 0.24
RTN3-209ENST00000538995 RALGAPBQ86X10 1494 aa16.52■□□□□ 0.23
RTN3-209ENST00000538995 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.51■□□□□ 0.23
RTN3-209ENST00000538995 SRPK2P78362 688 aaKnown RBP16.51■□□□□ 0.23
RTN3-209ENST00000538995 NBPF8Q3BBV2 869 aa16.51■□□□□ 0.23
RTN3-209ENST00000538995 SBNO2Q9Y2G9 1366 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms