RNA–Protein interactions for RNA: ENST00000538470.2

DDB1-212, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 858 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-212ENST00000538470 ABCC11Q96J66 1382 aa12.85□□□□□ -0.35
DDB1-212ENST00000538470 MARF1Q9Y4F3 1742 aaKnown RBP12.85□□□□□ -0.35
DDB1-212ENST00000538470 SOS2Q07890 1332 aaPredicted RBP12.84□□□□□ -0.35
DDB1-212ENST00000538470 RAB3GAP2Q9H2M9 1393 aa12.83□□□□□ -0.36
DDB1-212ENST00000538470 YTHDC2Q9H6S0 1430 aaKnown RBP12.83□□□□□ -0.36
DDB1-212ENST00000538470 NUTM2BA6NNL0 878 aaPredicted RBP12.82□□□□□ -0.36
DDB1-212ENST00000538470 NUTM2EB1AL46 878 aaPredicted RBP12.82□□□□□ -0.36
DDB1-212ENST00000538470 RGL3Q3MIN7 710 aa12.82□□□□□ -0.36
DDB1-212ENST00000538470 NUTM2AQ8IVF1 878 aaPredicted RBP12.82□□□□□ -0.36
DDB1-212ENST00000538470 PXDNQ92626 1479 aa12.82□□□□□ -0.36
DDB1-212ENST00000538470 AFF2P51816 1311 aa12.82□□□□□ -0.36
DDB1-212ENST00000538470 DDX17Q92841 729 aaKnown RBP12.81□□□□□ -0.36
DDB1-212ENST00000538470 DLC1Q96QB1 1528 aa12.81□□□□□ -0.36
DDB1-212ENST00000538470 NPHP3Q7Z494 1330 aa12.81□□□□□ -0.36
DDB1-212ENST00000538470 ADGRB2O60241 1585 aa12.81□□□□□ -0.36
DDB1-212ENST00000538470 ORAI2Q96SN7 254 aa12.8□□□□□ -0.36
DDB1-212ENST00000538470 RXRBP28702 533 aa12.79□□□□□ -0.36
DDB1-212ENST00000538470 SIRT1Q96EB6 747 aa12.79□□□□□ -0.36
DDB1-212ENST00000538470 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.79□□□□□ -0.36
DDB1-212ENST00000538470 RGPD8O14715 1765 aaPredicted RBP12.79□□□□□ -0.36
DDB1-212ENST00000538470 C14orf93Q9H972 538 aaKnown RBP12.78□□□□□ -0.36
DDB1-212ENST00000538470 DHX57Q6P158 1386 aaKnown RBP12.78□□□□□ -0.36
DDB1-212ENST00000538470 PLEKHH1Q9ULM0 1364 aa12.78□□□□□ -0.36
DDB1-212ENST00000538470 ADGRB1O14514 1584 aa12.77□□□□□ -0.36
DDB1-212ENST00000538470 ESCO1Q5FWF5 840 aa12.77□□□□□ -0.37
DDB1-212ENST00000538470 C8orf37Q96NL8 207 aa12.77□□□□□ -0.37
DDB1-212ENST00000538470 STK26Q9P289 416 aa12.77□□□□□ -0.37
DDB1-212ENST00000538470 RGS12O14924 1447 aa12.77□□□□□ -0.37
DDB1-212ENST00000538470 TMEM132EQ6IEE7 984 aa12.76□□□□□ -0.37
DDB1-212ENST00000538470 WAPLQ7Z5K2 1190 aa12.76□□□□□ -0.37
DDB1-212ENST00000538470 USP32Q8NFA0 1604 aa12.75□□□□□ -0.37
DDB1-212ENST00000538470 ABCA3Q99758 1704 aa12.75□□□□□ -0.37
DDB1-212ENST00000538470 ANKARQ7Z5J8 1434 aa12.74□□□□□ -0.37
DDB1-212ENST00000538470 HRCP23327 699 aa12.74□□□□□ -0.37
DDB1-212ENST00000538470 RBM6P78332 1123 aaKnown RBP12.74□□□□□ -0.37
DDB1-212ENST00000538470 ADAMTS2O95450 1211 aa12.73□□□□□ -0.37
DDB1-212ENST00000538470 NGLY1Q96IV0 654 aa12.73□□□□□ -0.37
DDB1-212ENST00000538470 ARHGEF28Q8N1W1 1705 aaKnown RBP12.73□□□□□ -0.37
DDB1-212ENST00000538470 ATRNO75882 1429 aa12.72□□□□□ -0.37
DDB1-212ENST00000538470 EIF3AQ14152 1382 aaKnown RBP12.72□□□□□ -0.37
DDB1-212ENST00000538470 ITSN1Q15811 1721 aa12.72□□□□□ -0.37
DDB1-212ENST00000538470 KIAA1210Q9ULL0 1709 aa12.72□□□□□ -0.37
DDB1-212ENST00000538470 FOXO3O43524 673 aa12.72□□□□□ -0.37
DDB1-212ENST00000538470 CFAP70Q5T0N1 1121 aa12.72□□□□□ -0.37
DDB1-212ENST00000538470 STAC3Q96MF2 364 aa12.72□□□□□ -0.37
DDB1-212ENST00000538470 TNS3Q68CZ2 1445 aa12.71□□□□□ -0.37
DDB1-212ENST00000538470 NWD2Q9ULI1 1742 aa12.71□□□□□ -0.37
DDB1-212ENST00000538470 FNBP4Q8N3X1 1017 aaPredicted RBP12.71□□□□□ -0.37
DDB1-212ENST00000538470 UPF1Q92900 1129 aaKnown RBP eCLIP12.71□□□□□ -0.37
DDB1-212ENST00000538470 QTRT2Q9H974 415 aaKnown RBP12.71□□□□□ -0.37
DDB1-212ENST00000538470 TRPC5Q9UL62 973 aaPredicted RBP12.71□□□□□ -0.37
DDB1-212ENST00000538470 TULP4Q9NRJ4 1543 aa12.71□□□□□ -0.38
DDB1-212ENST00000538470 PLCH1Q4KWH8 1693 aa12.7□□□□□ -0.38
DDB1-212ENST00000538470 SPATA31A3Q5VYP0 1347 aa12.7□□□□□ -0.38
DDB1-212ENST00000538470 USP21Q9UK80 565 aa12.7□□□□□ -0.38
DDB1-212ENST00000538470 TRPM3Q9HCF6 1732 aaPredicted RBP12.7□□□□□ -0.38
DDB1-212ENST00000538470 SBNO1A3KN83 1393 aa12.69□□□□□ -0.38
DDB1-212ENST00000538470 NUTM2FA1L443 756 aa12.69□□□□□ -0.38
DDB1-212ENST00000538470 PRAM1Q96QH2 718 aa12.69□□□□□ -0.38
DDB1-212ENST00000538470 ATAD2Q6PL18 1390 aa12.69□□□□□ -0.38
DDB1-212ENST00000538470 ALS2Q96Q42 1657 aa12.68□□□□□ -0.38
DDB1-212ENST00000538470 BCL9LQ86UU0 1499 aa12.68□□□□□ -0.38
DDB1-212ENST00000538470 XPCQ01831 940 aaPredicted RBP12.68□□□□□ -0.38
DDB1-212ENST00000538470 PHF8Q9UPP1 1060 aa12.68□□□□□ -0.38
DDB1-212ENST00000538470 ARHGEF10O15013 1369 aa12.68□□□□□ -0.38
DDB1-212ENST00000538470 SLIT2O94813 1529 aa12.67□□□□□ -0.38
DDB1-212ENST00000538470 POGKQ9P215 609 aa12.67□□□□□ -0.38
DDB1-212ENST00000538470 PSME1Q06323 249 aa12.66□□□□□ -0.38
DDB1-212ENST00000538470 KRT28Q7Z3Y7 464 aa12.66□□□□□ -0.38
DDB1-212ENST00000538470 CRYBG1Q9Y4K1 1723 aa12.65□□□□□ -0.38
DDB1-212ENST00000538470 GLI3P10071 1580 aa12.65□□□□□ -0.38
DDB1-212ENST00000538470 TOPAZ1Q8N9V7 1692 aa12.65□□□□□ -0.38
DDB1-212ENST00000538470 DCAF11Q8TEB1 546 aa12.65□□□□□ -0.38
DDB1-212ENST00000538470 SAFB2Q14151 953 aaKnown RBP eCLIP12.64□□□□□ -0.39
DDB1-212ENST00000538470 NRAPQ86VF7 1730 aa12.64□□□□□ -0.39
DDB1-212ENST00000538470 TRAK1Q9UPV9 953 aa12.63□□□□□ -0.39
DDB1-212ENST00000538470 ATP7BP35670 1465 aa12.63□□□□□ -0.39
DDB1-212ENST00000538470 COL14A1Q05707 1796 aaKnown RBP12.62□□□□□ -0.39
DDB1-212ENST00000538470 RALGAPBQ86X10 1494 aa12.62□□□□□ -0.39
DDB1-212ENST00000538470 GPRASP1Q5JY77 1395 aa12.62□□□□□ -0.39
DDB1-212ENST00000538470 BRWD3Q6RI45 1802 aa12.62□□□□□ -0.39
DDB1-212ENST00000538470 UNC5CLQ8IV45 518 aa12.61□□□□□ -0.39
DDB1-212ENST00000538470 GJD4Q96KN9 370 aaPredicted RBP12.61□□□□□ -0.39
DDB1-212ENST00000538470 KDM2AQ9Y2K7 1162 aa12.61□□□□□ -0.39
DDB1-212ENST00000538470 MINK1Q8N4C8 1332 aaPredicted RBP12.61□□□□□ -0.39
DDB1-212ENST00000538470 PHRF1Q9P1Y6 1649 aaKnown RBP12.6□□□□□ -0.39
DDB1-212ENST00000538470 WASLO00401 505 aaPredicted RBP12.6□□□□□ -0.39
DDB1-212ENST00000538470 HAP1P54257 671 aaPredicted RBP12.6□□□□□ -0.39
DDB1-212ENST00000538470 EP400Q96L91 3159 aa12.6□□□□□ -0.39
DDB1-212ENST00000538470 PRR36Q9H6K5 1346 aa12.6□□□□□ -0.39
DDB1-212ENST00000538470 HIRIP3Q9BW71 556 aaPredicted RBP12.59□□□□□ -0.39
DDB1-212ENST00000538470 PMFBP1Q8TBY8 1022 aa12.58□□□□□ -0.4
DDB1-212ENST00000538470 QRICH2Q9H0J4 1663 aa12.57□□□□□ -0.4
DDB1-212ENST00000538470 VPS72Q15906 364 aa12.57□□□□□ -0.4
DDB1-212ENST00000538470 LMOD2Q6P5Q4 547 aa12.56□□□□□ -0.4
DDB1-212ENST00000538470 CCDC125Q86Z20 511 aa12.56□□□□□ -0.4
DDB1-212ENST00000538470 CABLES1Q8TDN4 633 aa12.55□□□□□ -0.4
DDB1-212ENST00000538470 POLR3AO14802 1390 aaPredicted RBP12.55□□□□□ -0.4
DDB1-212ENST00000538470 TRPM1Q7Z4N2 1603 aa12.55□□□□□ -0.4
DDB1-212ENST00000538470 NGDNQ8NEJ9 315 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms