RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 C22orf23Q9BZE7 217 aa6.62□□□□□ -1.35
PTPRD-213ENST00000537002 CT47B1P0C2W7 299 aaPredicted RBP6.62□□□□□ -1.35
PTPRD-213ENST00000537002 RNF214Q8ND24 703 aa6.62□□□□□ -1.35
PTPRD-213ENST00000537002 HDGFP51858 240 aaKnown RBP6.61□□□□□ -1.35
PTPRD-213ENST00000537002 ZHX1Q9UKY1 873 aaPredicted RBP6.61□□□□□ -1.35
PTPRD-213ENST00000537002 NOL7Q9UMY1 257 aaKnown RBP6.61□□□□□ -1.35
PTPRD-213ENST00000537002 IPO8O15397 1037 aaKnown RBP6.61□□□□□ -1.35
PTPRD-213ENST00000537002 NUCB2P80303 420 aa6.61□□□□□ -1.35
PTPRD-213ENST00000537002 FAM184AQ8NB25 1140 aa6.61□□□□□ -1.35
PTPRD-213ENST00000537002 NKTRP30414 1462 aaKnown RBP6.61□□□□□ -1.35
PTPRD-213ENST00000537002 DMTNQ08495 405 aa6.61□□□□□ -1.35
PTPRD-213ENST00000537002 URB2Q14146 1524 aaKnown RBP6.61□□□□□ -1.35
PTPRD-213ENST00000537002 ST18O60284 1047 aa6.61□□□□□ -1.35
PTPRD-213ENST00000537002 KLHL40Q2TBA0 621 aa6.61□□□□□ -1.35
PTPRD-213ENST00000537002 KDM5CP41229 1560 aa6.61□□□□□ -1.35
PTPRD-213ENST00000537002 PDIA4P13667 645 aaKnown RBP6.61□□□□□ -1.35
PTPRD-213ENST00000537002 OS9Q13438 667 aaPredicted RBP6.61□□□□□ -1.35
PTPRD-213ENST00000537002 DIAPH3Q9NSV4 1193 aa6.61□□□□□ -1.35
PTPRD-213ENST00000537002 NPC1L1Q9UHC9 1359 aa6.6□□□□□ -1.35
PTPRD-213ENST00000537002 KIF3AQ9Y496 699 aa6.6□□□□□ -1.35
PTPRD-213ENST00000537002 MLECQ14165 292 aa6.6□□□□□ -1.35
PTPRD-213ENST00000537002 EPRSP07814 1512 aaKnown RBP6.6□□□□□ -1.35
PTPRD-213ENST00000537002 ST20-MTHFSA0A0A6YYL1 179 aa6.6□□□□□ -1.35
PTPRD-213ENST00000537002 MBD3O95983 291 aa6.6□□□□□ -1.35
PTPRD-213ENST00000537002 FEZ1Q99689 392 aa6.6□□□□□ -1.35
PTPRD-213ENST00000537002 U2AF1L5P0DN76 240 aaPredicted RBP6.6□□□□□ -1.35
PTPRD-213ENST00000537002 U2AF1Q01081 240 aaKnown RBP eCLIP6.6□□□□□ -1.35
PTPRD-213ENST00000537002 CAVIN1Q6NZI2 390 aaKnown RBP6.6□□□□□ -1.35
PTPRD-213ENST00000537002 ATAD2Q6PL18 1390 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 NUP160Q12769 1436 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 PRDM4Q9UKN5 801 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 WDR62O43379 1518 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 ABCA10Q8WWZ4 1543 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 SMC5Q8IY18 1101 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 MPNDQ8N594 471 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 PANK3Q9H999 370 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 PTPRKQ15262 1439 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 CLEC17AQ6ZS10 378 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 GOLGA6L1Q8N7Z2 621 aa6.59□□□□□ -1.35
PTPRD-213ENST00000537002 PANK1Q8TE04 598 aa6.59□□□□□ -1.36
PTPRD-213ENST00000537002 ZKSCAN5Q9Y2L8 839 aa6.59□□□□□ -1.36
PTPRD-213ENST00000537002 SAMD9Q5K651 1589 aa6.58□□□□□ -1.36
PTPRD-213ENST00000537002 GABPB1Q06547 395 aaPredicted RBP6.58□□□□□ -1.36
PTPRD-213ENST00000537002 ANKRD45Q5TZF3 282 aa6.58□□□□□ -1.36
PTPRD-213ENST00000537002 TBC1D2Q9BYX2 928 aa6.58□□□□□ -1.36
PTPRD-213ENST00000537002 APPP05067 770 aa6.58□□□□□ -1.36
PTPRD-213ENST00000537002 PLXNC1O60486 1568 aa6.58□□□□□ -1.36
PTPRD-213ENST00000537002 KANK1Q14678 1352 aa6.58□□□□□ -1.36
PTPRD-213ENST00000537002 ZNF445P59923 1031 aa6.58□□□□□ -1.36
PTPRD-213ENST00000537002 CBX1P83916 185 aa6.58□□□□□ -1.36
PTPRD-213ENST00000537002 NBPF8Q3BBV2 869 aa6.58□□□□□ -1.36
PTPRD-213ENST00000537002 PIK3C2GO75747 1445 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 SLC20A2Q08357 652 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 KIAA0586Q9BVV6 1533 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 UNC13AQ9UPW8 1703 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 EIF2AK4Q9P2K8 1649 aaKnown RBP6.57□□□□□ -1.36
PTPRD-213ENST00000537002 IPO4Q8TEX9 1081 aaKnown RBP6.57□□□□□ -1.36
PTPRD-213ENST00000537002 IFT57Q9NWB7 429 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 PLEKHG5O94827 1062 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 POGZQ7Z3K3 1410 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 ABCC2Q92887 1545 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 APAF1O14727 1248 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 HSP90B1P14625 803 aaKnown RBP6.57□□□□□ -1.36
PTPRD-213ENST00000537002 DNMT1P26358 1616 aaKnown RBP6.57□□□□□ -1.36
PTPRD-213ENST00000537002 REREQ9P2R6 1566 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 RSPH4AQ5TD94 716 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 DAPK1P53355 1430 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 LAMC1P11047 1609 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 NBPF1Q3BBV0 1214 aa6.57□□□□□ -1.36
PTPRD-213ENST00000537002 CWC22Q9HCG8 908 aaKnown RBP6.57□□□□□ -1.36
PTPRD-213ENST00000537002 GNL2Q13823 731 aaKnown RBP6.56□□□□□ -1.36
PTPRD-213ENST00000537002 ZKSCAN2Q63HK3 967 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 C14orf37Q86TY3 774 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 CCAR2Q8N163 923 aaKnown RBP6.56□□□□□ -1.36
PTPRD-213ENST00000537002 TRIM6-TRIM34B2RNG4 842 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 SETQ01105 290 aaPredicted RBP6.56□□□□□ -1.36
PTPRD-213ENST00000537002 TEX35Q5T0J7 233 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 GPRASP1Q5JY77 1395 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 UHRF1BP1LA0JNW5 1464 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 DNAJC2Q99543 621 aaKnown RBP6.56□□□□□ -1.36
PTPRD-213ENST00000537002 KDM5DQ9BY66 1539 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 NCOA3Q9Y6Q9 1424 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 PRPF40AO75400 957 aaKnown RBP6.56□□□□□ -1.36
PTPRD-213ENST00000537002 XPCQ01831 940 aaPredicted RBP6.56□□□□□ -1.36
PTPRD-213ENST00000537002 ADGRL2O95490 1459 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 E9PCH4 1651 aa6.56□□□□□ -1.36
PTPRD-213ENST00000537002 HTATSF1O43719 755 aaKnown RBP6.55□□□□□ -1.36
PTPRD-213ENST00000537002 SYCP1Q15431 976 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.55□□□□□ -1.36
PTPRD-213ENST00000537002 BBXQ8WY36 941 aaPredicted RBP6.55□□□□□ -1.36
PTPRD-213ENST00000537002 PDZRN3Q9UPQ7 1066 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 GRIN2AQ12879 1464 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 TPM4P67936 248 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 RAB3GAP1Q15042 981 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 DUSP27Q5VZP5 1158 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 SLFN5Q08AF3 891 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 CHMP3Q9Y3E7 222 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 UVSSAQ2YD98 709 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 CTR9Q6PD62 1173 aa6.55□□□□□ -1.36
PTPRD-213ENST00000537002 AEBP1Q8IUX7 1158 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms