RNA–Protein interactions for RNA: ENST00000535810.1

CHD4-204, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 607 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-204ENST00000535810 MST1RQ04912 1400 aa13.03□□□□□ -0.32
CHD4-204ENST00000535810 MYOM2P54296 1465 aa13.03□□□□□ -0.32
CHD4-204ENST00000535810 NRXN1Q9ULB1 1477 aa13.03□□□□□ -0.32
CHD4-204ENST00000535810 PHLPP1O60346 1717 aa13.02□□□□□ -0.32
CHD4-204ENST00000535810 ZNF772Q68DY9 489 aaPredicted RBP13.02□□□□□ -0.33
CHD4-204ENST00000535810 RNF39Q9H2S5 420 aa13.02□□□□□ -0.33
CHD4-204ENST00000535810 COL16A1Q07092 1604 aaPredicted RBP13.02□□□□□ -0.33
CHD4-204ENST00000535810 AHDC1Q5TGY3 1603 aaPredicted RBP13.02□□□□□ -0.33
CHD4-204ENST00000535810 JCADQ9P266 1359 aa13.01□□□□□ -0.33
CHD4-204ENST00000535810 TECPR2O15040 1411 aa13.01□□□□□ -0.33
CHD4-204ENST00000535810 BRINP3Q76B58 766 aa13□□□□□ -0.33
CHD4-204ENST00000535810 LRPPRCP42704 1394 aaKnown RBP12.99□□□□□ -0.33
CHD4-204ENST00000535810 ABCC11Q96J66 1382 aa12.98□□□□□ -0.33
CHD4-204ENST00000535810 TMEM132EQ6IEE7 984 aa12.98□□□□□ -0.33
CHD4-204ENST00000535810 KNDC1Q76NI1 1749 aa12.98□□□□□ -0.33
CHD4-204ENST00000535810 YTHDC2Q9H6S0 1430 aaKnown RBP12.97□□□□□ -0.33
CHD4-204ENST00000535810 C14orf93Q9H972 538 aaKnown RBP12.97□□□□□ -0.33
CHD4-204ENST00000535810 STK26Q9P289 416 aa12.97□□□□□ -0.33
CHD4-204ENST00000535810 LAMC1P11047 1609 aa12.97□□□□□ -0.33
CHD4-204ENST00000535810 CDC42BPGQ6DT37 1551 aa12.97□□□□□ -0.33
CHD4-204ENST00000535810 C1orf167Q5SNV9 1468 aa12.97□□□□□ -0.33
CHD4-204ENST00000535810 NHSL1Q5SYE7 1610 aa12.96□□□□□ -0.33
CHD4-204ENST00000535810 SPATA31A6Q5VVP1 1343 aa12.96□□□□□ -0.33
CHD4-204ENST00000535810 RXRBP28702 533 aa12.96□□□□□ -0.33
CHD4-204ENST00000535810 CFAP70Q5T0N1 1121 aa12.95□□□□□ -0.34
CHD4-204ENST00000535810 PLEKHH1Q9ULM0 1364 aa12.94□□□□□ -0.34
CHD4-204ENST00000535810 WAPLQ7Z5K2 1190 aa12.94□□□□□ -0.34
CHD4-204ENST00000535810 ADGRB1O14514 1584 aa12.94□□□□□ -0.34
CHD4-204ENST00000535810 DHX57Q6P158 1386 aaKnown RBP12.94□□□□□ -0.34
CHD4-204ENST00000535810 SHPRHQ149N8 1683 aa12.93□□□□□ -0.34
CHD4-204ENST00000535810 MEX3CQ5U5Q3 659 aaKnown RBP12.93□□□□□ -0.34
CHD4-204ENST00000535810 SPINK5Q9NQ38 1064 aaPredicted RBP12.93□□□□□ -0.34
CHD4-204ENST00000535810 LRP6O75581 1613 aa12.92□□□□□ -0.34
CHD4-204ENST00000535810 DCAF11Q8TEB1 546 aa12.92□□□□□ -0.34
CHD4-204ENST00000535810 ZNF219Q9P2Y4 722 aaPredicted RBP12.92□□□□□ -0.34
CHD4-204ENST00000535810 CDK12Q9NYV4 1490 aaPredicted RBP12.91□□□□□ -0.34
CHD4-204ENST00000535810 DDX17Q92841 729 aaKnown RBP12.91□□□□□ -0.34
CHD4-204ENST00000535810 ORAI2Q96SN7 254 aa12.91□□□□□ -0.34
CHD4-204ENST00000535810 DLC1Q96QB1 1528 aa12.9□□□□□ -0.34
CHD4-204ENST00000535810 SIRT1Q96EB6 747 aa12.9□□□□□ -0.34
CHD4-204ENST00000535810 STAC3Q96MF2 364 aa12.9□□□□□ -0.34
CHD4-204ENST00000535810 KDM2AQ9Y2K7 1162 aa12.9□□□□□ -0.34
CHD4-204ENST00000535810 PRAM1Q96QH2 718 aa12.88□□□□□ -0.35
CHD4-204ENST00000535810 FMN2Q9NZ56 1722 aa12.88□□□□□ -0.35
CHD4-204ENST00000535810 SOS2Q07890 1332 aaPredicted RBP12.88□□□□□ -0.35
CHD4-204ENST00000535810 PNPLA6Q8IY17 1366 aa12.87□□□□□ -0.35
CHD4-204ENST00000535810 LRRC59Q96AG4 307 aaKnown RBP12.87□□□□□ -0.35
CHD4-204ENST00000535810 C1QBPQ07021 282 aaKnown RBP12.86□□□□□ -0.35
CHD4-204ENST00000535810 ESCO1Q5FWF5 840 aa12.86□□□□□ -0.35
CHD4-204ENST00000535810 ADGRB2O60241 1585 aa12.86□□□□□ -0.35
CHD4-204ENST00000535810 NUTM2FA1L443 756 aa12.85□□□□□ -0.35
CHD4-204ENST00000535810 CAPN15O75808 1086 aa12.85□□□□□ -0.35
CHD4-204ENST00000535810 SAFB2Q14151 953 aaKnown RBP eCLIP12.85□□□□□ -0.35
CHD4-204ENST00000535810 NPHP3Q7Z494 1330 aa12.85□□□□□ -0.35
CHD4-204ENST00000535810 PXDNQ92626 1479 aa12.85□□□□□ -0.35
CHD4-204ENST00000535810 POGKQ9P215 609 aa12.84□□□□□ -0.35
CHD4-204ENST00000535810 TRAK1Q9UPV9 953 aa12.84□□□□□ -0.35
CHD4-204ENST00000535810 NUTM2BA6NNL0 878 aaPredicted RBP12.83□□□□□ -0.36
CHD4-204ENST00000535810 NUTM2EB1AL46 878 aaPredicted RBP12.83□□□□□ -0.36
CHD4-204ENST00000535810 FKBP8Q14318 412 aa12.83□□□□□ -0.36
CHD4-204ENST00000535810 NUTM2AQ8IVF1 878 aaPredicted RBP12.83□□□□□ -0.36
CHD4-204ENST00000535810 ZRANB1Q9UGI0 708 aa12.83□□□□□ -0.36
CHD4-204ENST00000535810 KIF1AQ12756 1690 aa12.83□□□□□ -0.36
CHD4-204ENST00000535810 FOXO3O43524 673 aa12.82□□□□□ -0.36
CHD4-204ENST00000535810 AFF2P51816 1311 aa12.82□□□□□ -0.36
CHD4-204ENST00000535810 ARHGEF28Q8N1W1 1705 aaKnown RBP12.82□□□□□ -0.36
CHD4-204ENST00000535810 KIAA1210Q9ULL0 1709 aa12.82□□□□□ -0.36
CHD4-204ENST00000535810 RBM6P78332 1123 aaKnown RBP12.81□□□□□ -0.36
CHD4-204ENST00000535810 XPCQ01831 940 aaPredicted RBP12.81□□□□□ -0.36
CHD4-204ENST00000535810 USP32Q8NFA0 1604 aa12.8□□□□□ -0.36
CHD4-204ENST00000535810 COL22A1Q8NFW1 1626 aaPredicted RBP12.8□□□□□ -0.36
CHD4-204ENST00000535810 ANKARQ7Z5J8 1434 aa12.8□□□□□ -0.36
CHD4-204ENST00000535810 SIN3AQ96ST3 1273 aa12.8□□□□□ -0.36
CHD4-204ENST00000535810 HIRIP3Q9BW71 556 aaPredicted RBP12.8□□□□□ -0.36
CHD4-204ENST00000535810 RGPD8O14715 1765 aaPredicted RBP12.79□□□□□ -0.36
CHD4-204ENST00000535810 L3MBTL2Q969R5 705 aa12.79□□□□□ -0.36
CHD4-204ENST00000535810 QTRT2Q9H974 415 aaKnown RBP12.79□□□□□ -0.36
CHD4-204ENST00000535810 MINK1Q8N4C8 1332 aaPredicted RBP12.79□□□□□ -0.36
CHD4-204ENST00000535810 TRIM26Q12899 539 aaPredicted RBP12.78□□□□□ -0.36
CHD4-204ENST00000535810 PHF8Q9UPP1 1060 aa12.78□□□□□ -0.36
CHD4-204ENST00000535810 EIF3AQ14152 1382 aaKnown RBP12.78□□□□□ -0.36
CHD4-204ENST00000535810 RGS12O14924 1447 aa12.78□□□□□ -0.36
CHD4-204ENST00000535810 TULP4Q9NRJ4 1543 aa12.78□□□□□ -0.36
CHD4-204ENST00000535810 NBPF1Q3BBV0 1214 aa12.77□□□□□ -0.37
CHD4-204ENST00000535810 C8orf37Q96NL8 207 aa12.77□□□□□ -0.37
CHD4-204ENST00000535810 PRR36Q9H6K5 1346 aa12.77□□□□□ -0.37
CHD4-204ENST00000535810 ATAD2Q6PL18 1390 aa12.77□□□□□ -0.37
CHD4-204ENST00000535810 WASLO00401 505 aaPredicted RBP12.76□□□□□ -0.37
CHD4-204ENST00000535810 ADAMTS2O95450 1211 aa12.76□□□□□ -0.37
CHD4-204ENST00000535810 NGLY1Q96IV0 654 aa12.76□□□□□ -0.37
CHD4-204ENST00000535810 SPATA31A3Q5VYP0 1347 aa12.76□□□□□ -0.37
CHD4-204ENST00000535810 NEUROD1Q13562 356 aa12.75□□□□□ -0.37
CHD4-204ENST00000535810 TNS3Q68CZ2 1445 aa12.75□□□□□ -0.37
CHD4-204ENST00000535810 KRT28Q7Z3Y7 464 aa12.75□□□□□ -0.37
CHD4-204ENST00000535810 ATP7BP35670 1465 aa12.74□□□□□ -0.37
CHD4-204ENST00000535810 CCDC125Q86Z20 511 aa12.74□□□□□ -0.37
CHD4-204ENST00000535810 SBNO1A3KN83 1393 aa12.73□□□□□ -0.37
CHD4-204ENST00000535810 PMFBP1Q8TBY8 1022 aa12.73□□□□□ -0.37
CHD4-204ENST00000535810 TRPM1Q7Z4N2 1603 aa12.73□□□□□ -0.37
CHD4-204ENST00000535810 PSME1Q06323 249 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms