RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	RSBN1L	Q6PCB5	846 aa	Predicted RBP	6.32	□□□□□ -1.4
CD44-238	ENST00000534296	RNF19B	Q6ZMZ0	732 aa		6.32	□□□□□ -1.4
CD44-238	ENST00000534296	RIC3	Q7Z5B4	369 aa		6.32	□□□□□ -1.4
CD44-238	ENST00000534296	ANKLE1	Q8NAG6	615 aa		6.32	□□□□□ -1.4
CD44-238	ENST00000534296	ZBTB3	Q9H5J0	574 aa		6.32	□□□□□ -1.4
CD44-238	ENST00000534296	SPTLC1	O15269	473 aa		6.31	□□□□□ -1.4
CD44-238	ENST00000534296	NDUFV2	P19404	249 aa		6.31	□□□□□ -1.4
CD44-238	ENST00000534296	CLK2	P49760	499 aa	Known RBP	6.31	□□□□□ -1.4
CD44-238	ENST00000534296	GUCA2A	Q02747	115 aa		6.31	□□□□□ -1.4
CD44-238	ENST00000534296	MYSM1	Q5VVJ2	828 aa		6.31	□□□□□ -1.4
CD44-238	ENST00000534296	HLA-C	Q95604	372 aa		6.31	□□□□□ -1.4
CD44-238	ENST00000534296	NUTM2B	A6NNL0	878 aa	Predicted RBP	6.3	□□□□□ -1.4
CD44-238	ENST00000534296	NUTM2E	B1AL46	878 aa	Predicted RBP	6.3	□□□□□ -1.4
CD44-238	ENST00000534296	RNF223	E7ERA6	249 aa		6.3	□□□□□ -1.4
CD44-238	ENST00000534296	NUTM2D	Q5VT03	806 aa	Predicted RBP	6.3	□□□□□ -1.4
CD44-238	ENST00000534296	PRPF38B	Q5VTL8	546 aa	Known RBP	6.3	□□□□□ -1.4
CD44-238	ENST00000534296	NUTM2A	Q8IVF1	878 aa	Predicted RBP	6.3	□□□□□ -1.4
CD44-238	ENST00000534296	ZBTB24	O43167	697 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-238	ENST00000534296	BRPF1	P55201	1214 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-238	ENST00000534296	CSPP1	Q1MSJ5	1256 aa		6.29	□□□□□ -1.4
CD44-238	ENST00000534296	TUSC1	Q2TAM9	212 aa		6.29	□□□□□ -1.4
CD44-238	ENST00000534296	SH3D19	Q5HYK7	790 aa		6.29	□□□□□ -1.4
CD44-238	ENST00000534296	PRKD2	Q9BZL6	878 aa		6.29	□□□□□ -1.4
CD44-238	ENST00000534296	FAM117A	Q9C073	453 aa		6.29	□□□□□ -1.4
CD44-238	ENST00000534296		V9GY48	417 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-238	ENST00000534296	JUND	P17535	347 aa		6.28	□□□□□ -1.4
CD44-238	ENST00000534296	MMP16	P51512	607 aa		6.28	□□□□□ -1.4
CD44-238	ENST00000534296	FAM160A2	Q8N612	972 aa	Predicted RBP	6.28	□□□□□ -1.4
CD44-238	ENST00000534296	FCF1	Q9Y324	198 aa	Known RBP	6.28	□□□□□ -1.4
CD44-238	ENST00000534296	DXO	O77932	396 aa	Known RBP	6.27	□□□□□ -1.41
CD44-238	ENST00000534296	PRKCSH	P14314	528 aa	Predicted RBP	6.27	□□□□□ -1.41
CD44-238	ENST00000534296	SKIV2L	Q15477	1246 aa	Known RBP	6.27	□□□□□ -1.41
CD44-238	ENST00000534296	HELB	Q8NG08	1087 aa	Predicted RBP	6.27	□□□□□ -1.41
CD44-238	ENST00000534296	PRR7	Q8TB68	274 aa		6.27	□□□□□ -1.41
CD44-238	ENST00000534296	PCMTD1	Q96MG8	357 aa	Predicted RBP	6.27	□□□□□ -1.41
CD44-238	ENST00000534296	PRDM9	Q9NQV7	894 aa		6.27	□□□□□ -1.41
CD44-238	ENST00000534296	POLR3E	Q9NVU0	708 aa		6.27	□□□□□ -1.41
CD44-238	ENST00000534296	PCDHGC3	Q9UN70	934 aa		6.27	□□□□□ -1.41
CD44-238	ENST00000534296	PPEF1	O14829	653 aa	Predicted RBP	6.26	□□□□□ -1.41
CD44-238	ENST00000534296	SLC19A1	P41440	591 aa		6.26	□□□□□ -1.41
CD44-238	ENST00000534296	DESI1	Q6ICB0	168 aa		6.26	□□□□□ -1.41
CD44-238	ENST00000534296	TSC1	Q92574	1164 aa		6.26	□□□□□ -1.41
CD44-238	ENST00000534296	SYMPK	Q92797	1274 aa	Known RBP	6.26	□□□□□ -1.41
CD44-238	ENST00000534296	GOPC	Q9HD26	462 aa		6.26	□□□□□ -1.41
CD44-238	ENST00000534296	HRC	P23327	699 aa		6.25	□□□□□ -1.41
CD44-238	ENST00000534296	RPIA	P49247	311 aa		6.25	□□□□□ -1.41
CD44-238	ENST00000534296	CCDC24	Q8N4L8	307 aa		6.25	□□□□□ -1.41
CD44-238	ENST00000534296	IL27	Q8NEV9	243 aa		6.25	□□□□□ -1.41
CD44-238	ENST00000534296	LIMD1	Q9UGP4	676 aa		6.25	□□□□□ -1.41
CD44-238	ENST00000534296	PLEKHG3	A1L390	1219 aa		6.24	□□□□□ -1.41
CD44-238	ENST00000534296	CD2BP2	O95400	341 aa	Known RBP	6.24	□□□□□ -1.41
CD44-238	ENST00000534296	CCNYL3	P0C7X3	344 aa		6.24	□□□□□ -1.41
CD44-238	ENST00000534296	PTPRN	Q16849	979 aa		6.24	□□□□□ -1.41
CD44-238	ENST00000534296	NUDT12	Q9BQG2	462 aa		6.24	□□□□□ -1.41
CD44-238	ENST00000534296	PCDHB15	Q9Y5E8	787 aa		6.24	□□□□□ -1.41
CD44-238	ENST00000534296	LILRB3	O75022	631 aa		6.23	□□□□□ -1.41
CD44-238	ENST00000534296	CABLES1	Q8TDN4	633 aa		6.23	□□□□□ -1.41
CD44-238	ENST00000534296	IRX2	Q9BZI1	471 aa	Predicted RBP	6.23	□□□□□ -1.41
CD44-238	ENST00000534296	LAPTM4A	Q15012	233 aa		6.22	□□□□□ -1.41
CD44-238	ENST00000534296	QPCT	Q16769	361 aa		6.22	□□□□□ -1.41
CD44-238	ENST00000534296	CTH	P32929	405 aa		6.21	□□□□□ -1.42
CD44-238	ENST00000534296	ZNF697	Q5TEC3	545 aa		6.21	□□□□□ -1.42
CD44-238	ENST00000534296	SPRYD7	Q5W111	196 aa		6.21	□□□□□ -1.42
CD44-238	ENST00000534296	ZNF598	Q86UK7	904 aa	Known RBP	6.21	□□□□□ -1.42
CD44-238	ENST00000534296	CFAP99	D6REC4	459 aa		6.2	□□□□□ -1.42
CD44-238	ENST00000534296	TRIM32	Q13049	653 aa		6.19	□□□□□ -1.42
CD44-238	ENST00000534296	LYPD8	Q6UX82	237 aa		6.19	□□□□□ -1.42
CD44-238	ENST00000534296	LIAT1	Q6ZQX7	453 aa		6.19	□□□□□ -1.42
CD44-238	ENST00000534296	PNMA1	Q8ND90	353 aa		6.19	□□□□□ -1.42
CD44-238	ENST00000534296	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	6.19	□□□□□ -1.42
CD44-238	ENST00000534296	KCNH2	Q12809	1159 aa		6.18	□□□□□ -1.42
CD44-238	ENST00000534296	PLA2G2C	Q5R387	149 aa		6.18	□□□□□ -1.42
CD44-238	ENST00000534296	PPP2R2D	Q66LE6	453 aa		6.18	□□□□□ -1.42
CD44-238	ENST00000534296	PROCA1	Q8NCQ7	364 aa	Predicted RBP	6.18	□□□□□ -1.42
CD44-238	ENST00000534296	ARMC2	Q8NEN0	867 aa		6.18	□□□□□ -1.42
CD44-238	ENST00000534296	EVA1B	Q9NVM1	165 aa		6.18	□□□□□ -1.42
CD44-238	ENST00000534296	PDZRN3	Q9UPQ7	1066 aa		6.18	□□□□□ -1.42
CD44-238	ENST00000534296	WNT7B	P56706	349 aa		6.17	□□□□□ -1.42
CD44-238	ENST00000534296	TMEM259	Q4ZIN3	620 aa		6.17	□□□□□ -1.42
CD44-238	ENST00000534296	RTL5	Q5HYW3	569 aa	Predicted RBP	6.17	□□□□□ -1.42
CD44-238	ENST00000534296	UNC93B1	Q9H1C4	597 aa		6.17	□□□□□ -1.42
CD44-238	ENST00000534296	APBB1	O00213	710 aa		6.16	□□□□□ -1.42
CD44-238	ENST00000534296	GFRA3	O60609	400 aa		6.16	□□□□□ -1.42
CD44-238	ENST00000534296	AP1G2	O75843	785 aa		6.16	□□□□□ -1.42
CD44-238	ENST00000534296	FOXC1	Q12948	553 aa		6.16	□□□□□ -1.42
CD44-238	ENST00000534296	NBPF14	Q5TI25	921 aa		6.16	□□□□□ -1.42
CD44-238	ENST00000534296	NRG2	O14511	850 aa	Predicted RBP	6.15	□□□□□ -1.42
CD44-238	ENST00000534296	RFC5	P40937	340 aa		6.15	□□□□□ -1.42
CD44-238	ENST00000534296	PRR20E	P86478	221 aa		6.15	□□□□□ -1.42
CD44-238	ENST00000534296	PRR20C	P86479	221 aa		6.15	□□□□□ -1.42
CD44-238	ENST00000534296	PRR20D	P86480	221 aa		6.15	□□□□□ -1.42
CD44-238	ENST00000534296	PRR20B	P86481	221 aa		6.15	□□□□□ -1.42
CD44-238	ENST00000534296	PRR20A	P86496	221 aa		6.15	□□□□□ -1.42
CD44-238	ENST00000534296	CYP4X1	Q8N118	509 aa		6.14	□□□□□ -1.43
CD44-238	ENST00000534296	WNT7A	O00755	349 aa		6.13	□□□□□ -1.43
CD44-238	ENST00000534296	F12	P00748	615 aa	Predicted RBP	6.13	□□□□□ -1.43
CD44-238	ENST00000534296	AGER	Q15109	404 aa		6.13	□□□□□ -1.43
CD44-238	ENST00000534296	EHBP1	Q8NDI1	1231 aa		6.13	□□□□□ -1.43
CD44-238	ENST00000534296	EMID1	Q96A84	441 aa	Predicted RBP	6.13	□□□□□ -1.43
CD44-238	ENST00000534296	MAP10	Q9P2G4	905 aa		6.13	□□□□□ -1.43

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